BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06720.1
Length=2330
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477986 jgi|Araly1|477986|fgenesh2_kg.3__687__AT3G06720.1 3302 0.0
Ahg474778 jgi|Araly1|474778|fgenesh2_kg.1__4732__AT1G55035.1 974 0.0
> Ahg477986 jgi|Araly1|477986|fgenesh2_kg.3__687__AT3G06720.1
Length=2193
Score = 3302 bits (1788), Expect = 0.0
Identities = 2048/2168 (94%), Gaps = 40/2168 (2%)
Strand=Plus/Plus
Query 1 GCTTTCATTCTTTGGATGCGCTGTTGTCAACTTGTCCCTCGCTGCCTCTGCTTCTTAACT 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTTTCATTCTTTGGTTGCGCTGTTGTCAACTTGTCCCTCGCTGCCTCTGCTTCTTAA-- 58
Query 61 CTTTCTTTATCACTTTTCCACTCCCAAATCAATTTTTA-GG-ttttttttATAATTAT-A 117
| |||||||||||||| |||||||||||||||||||| || |||||||| | || | |
Sbjct 59 C--TCTTTATCACTTTTTCACTCCCAAATCAATTTTTAGGGTTTTTTTTTTTTTTTTTAA 116
Query 118 A-TTTATTTGCTCTCGGCAGGATCTATATAATACACAGACCAGTCTTTGCGTGTGCT-TG 175
| ||||||||||||| ||||||||||||| ||||||| |||| || ||||||||| | ||
Sbjct 117 ATTTTATTTGCTCTCCGCAGGATCTATAT-ATACACAAACCACTCGTTGCGTGTG-TCTG 174
Query 176 TGTGCATTCATTGATCGGGTTTATATCT-TTTCATCGGATTTTCTTTGTCGAGCAAGAGC 234
|| |||||||||||||||||| || ||| ||| ||||||||||| ||||||||| |||||
Sbjct 175 TGAGCATTCATTGATCGGGTTAATTTCTCTTTTATCGGATTTTCCTTGTCGAGCCAGAGC 234
Query 235 CATGTCACTGAGACCCAACGCTAAGACGGAGGTTCGCCGGAACCGATACAAAGTTGCAGT 294
|||||| |||||||||||||| | ||||||||||||||||||| | ||||||||||| ||
Sbjct 235 CATGTCGCTGAGACCCAACGCCAGGACGGAGGTTCGCCGGAACAGGTACAAAGTTGCTGT 294
Query 295 GGATGCGGAGGAAGGACGACGGAGGAGAGAAGACAACATGGTTGAGATCCGTAAAAGCAA 354
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 295 GGATGCGGAGGAAGGACGACGGAGGAGAGAGGACAACATGGTTGAGATCCGTAAAAGTAA 354
Query 355 GCGTGAGGAGAGTTTGATGAAGAAGAGACGTGAAGGTATGCAAGCTCTTCAGGGTTTCCC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 355 GCGTGAGGAGAGTTTGATGAAGAAGAGACGTGAAGGTATGCAAGCTCTTCAGGATTTCCC 414
Query 415 TTCAGCTTCCGCCGCCTCCGTCGATAAGAAGTTGGATAGTCTGAAGGATATGGTCGCTGG 474
|||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct 415 TTCAGCTTCCGCCGCCTCCGTCGATAAGAAGTTGGAGAGTTTGCAGGATATGGTCGCTGG 474
Query 475 GGTTTGGTCCGATGACCCTGCCTTGCAGCTTGAGTCCACTACTCAGTTCAGGAAGCTTCT 534
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GGTTTTGTCCGATGATCCTGCCTTGCAGCTTGAGTCCACTACTCAGTTCAGGAAGCTTCT 534
Query 535 CTCTATTGAGAGAAGTCCTCCAATCGAGGAAGTGATAAG-TGCTGGTGTTGTTCCTAGGT 593
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct 535 CTCTATTGAGAGAAGTCCTCCAATCGAGGAAGTGAT-AGCTGCTGGTGTTGTTCCTCGGT 593
Query 594 TTGTTGAGTTTCTTAAGAAAGAAGATTACCCCGCCATTCAGTTTGAGGCAGCTTGGGCTC 653
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 594 TTGTTGAGTTTCTTAAGAAAGAAGATTACCCCGCGATTCAGTTTGAGGCAGCTTGGGCTC 653
Query 654 TAACAAACATTGCATCTGGAACATCGGATCACACTAAGGTTGTAATCGATCACAATGCTG 713
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 654 TGACAAACATTGCATCTGGAACATCCGATCACACTAAGGTTGTAATCGATCACAATGCTG 713
Query 714 TTCCAATCTTTGTTCAGCTTCTTGCTTCCCCTAGCGATGATGTTCGTGAACAGGCTGTAT 773
||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 714 TTCCAGTCTTTGTACAGCTTCTTGCTTCCCCTAGCGATGATGTCCGTGAGCAGGCTGTAT 773
Query 774 GGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGATCTTGTTCTTGGATGTG 833
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGTGATCTTGTTCTTGGATGTA 833
Query 834 GGGCACTGCTTCCGCTGCTCAATCAGCTTAATGAGCATGCTAAATTGTCCATGCTTCGAA 893
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 834 GGGCACTGCTTCCGCTGCTCAATCAGCTTAATGAGCATGCCAAATTGTCCATGCTTCGAA 893
Query 894 ATGCCACTTGGACCTTGTCAAACTTCTGTCGTGGCAAGCCTCAGCCTCACTTTGACCAGG 953
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ATGCCACATGGACCTTGTCAAACTTCTGTCGTGGCAAGCCTCAGCCTCACTTTGACCAGG 953
Query 954 TCAAACCTGCTCTTCCCGCCCTTGAACGACTAATTCATTCAGATGATGAAGAAGTCTTGA 1013
| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 954 TGAAACCTGCTCTTCCGGCCCTTGAACGACTAATTCATTCAAATGATGAAGAAGTCTTGA 1013
Query 1014 CAGATGCCTGTTGGGCTCTTTCTTACCTCTCTGATGGGACCAATGACAAAATCCAGACTG 1073
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1014 CAGATGCCTGTTGGGCTCTCTCATACCTCTCTGATGGGACCAATGACAAAATCCAGACTG 1073
Query 1074 TCATCCAGGCCGGTGTTGTCCCAAAACTTGTTGAACTTCTCCTCCATCATTCTCCATCTG 1133
||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1074 TCATCGAGGCCGGTGTTGTCCCAAGACTTGTTGAACTTCTCCTCCATCCTTCTCCATCTG 1133
Query 1134 TGCTAATTCCTGCTCTTCGCACTGTTGGAAATATAGTTACTGGAGATGATATACAAACAC 1193
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1134 TGCTAATTCCTGCACTTCGCACTGTTGGAAATATAGTTACTGGAGATGATTTACAAACAC 1193
Query 1194 AGTGCGTGATCAATAGTGGTGCTCTACCTTGTCTTGCCAACCTGCTCACTCAAAACCATA 1253
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1194 AGTGGGTGATCAATAGTGGTGCTCTACCTTGTCTTGCCAACTTGCTCACTCAAAACTATA 1253
Query 1254 AGAAAAGCATAAAGAAGGAAGCTTGCTGGACGATTTCAAACATCACAGCAGGCAACAAAG 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AGAAAAGCATAAAGAAGGAAGCTTGCTGGACGATTTCAAACATCACAGCAGGCAACAAAG 1313
Query 1314 ATCAGATCCAGACGGTAGTTGAGGCTAATTTGATTTCCCCGTTGGTGAGTCTGCTTCAAA 1373
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1314 ATCAGATCCAGACGGTAGTTGAGGCTAATTTGATTGCCCCGCTGGTGAGTCTGCTTCAAA 1373
Query 1374 ATGCTGAATTTGACATTAAGAAGGAAGCTGCATGGGCAATTTCAAATGCAACTTCAGGTG 1433
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1374 ATGCTGAATTTGACATTAAGAAAGAAGCTGCATGGGCAATTTCAAATGCAACTTCAGGTG 1433
Query 1434 GTTCTCATGATCAAATAAAATACCTGGTGGAGCAAGGGTGCATAAAACCATTATGCGATC 1493
|||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 1434 GTTCTCATGATCAAATCAAACACCTGGTGGAGCAAGGATGCATAAAACCATTATGCGACC 1493
Query 1494 TCCTGGTTTGCCCAGATCCAAGAATCATAACTGTCTGCCTTGAAGGATTGGAAAACATTT 1553
|||| || ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1494 TCCTAGTATGCCCAGATCCAAGAATCATAACGGTGTGCCTTGAAGGATTGGAAAACATTT 1553
Query 1554 TGAAGGTGGGAGAGGCAGAGAAGAACTTGGGTCACACAGGAGACATGAACTATTACGCTC 1613
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1554 TGAAGGTGGGAGAGGCAGAGAAGAACTTGGGTAACACAGGAGACATGAACTATTACGCAC 1613
Query 1614 AGCTGATTGATGATGCAGAAGGGCTAGAAAAGATCGAGAACCTTCAGAGCCATGACAACA 1673
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1614 AGCTGATTGATGATGCAGAAGGGCTAGAAAAGATTGAGAACCTTCAGAGCCATGACAACA 1673
Query 1674 ATGAGATCTATGAGAAGGCTGTTAAAATTCTGGAGACATACTGGCTTGAAGAGGAAGATG 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 ATGAGATCTATGAGAAGGCTGTTAAAATTCTGGAGACATACTGGCTTGAAGAGGAAGATG 1733
Query 1734 ATGAGACACAGCAACCTCCAGGTGTTGATGGTTCTCAGGCTGGGTTCCAGTTTGGAGGGA 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 ATGAGACACAGCAACCTCCAGGTGTTGATGGTTCTCAGGCTGGGTTCCAGTTTGGAGGGA 1793
Query 1794 ATCAAGCTCCAGTACCATCCGGAGGATTCAACTTCAGCTGAAGGTAAATAAAAGAATGGA 1853
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1794 ATCAAGCTCCAGTCCCATCCGGAGGATTCAACTTCAGCTGAAGGTAAAAAAAAGAATGGA 1853
Query 1854 ATTGGAAGCTTGCAACTTGAGAATGGTGAAAGGTCAGAGTCAGTCAGAGTCTAGTTTCAC 1913
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 ATTGGAAGCTTGCAACTTGAGAATGGTGAAAGGTCAGAGTCAGTCAGAGTCTAGTTTCAT 1913
Query 1914 TGCCATGGTTATA-CTCCAGGTCTGGTCTGGTCTGGTCT----CAGAGGTTTGTACCGGG 1968
||||| ||||||| | || |||||||||||||||||||| ||||||| |||||||||
Sbjct 1914 TGCCAGGGTTATAGC-CCTGGTCTGGTCTGGTCTGGTCTGGTTCAGAGGTCTGTACCGGG 1972
Query 1969 TGGTCGGTTTAAAAGTACAGCGTCTGAGAAAGTGTTTGGTT-CATTGTCCAGGGCTAttt 2027
|||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||
Sbjct 1973 TGGTCGGTTTAAAAGTACAGAGTCTGAGAAAGTGGTTGGTTTCATTGTCCAGGGCTATTT 2032
Query 2028 ttttGAAATGACTGGTACACCGGTCGTGAGTCGACCTTTGTGTTGTTTTTAAATTTTGGA 2087
|||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| |
Sbjct 2033 TTTTGAAATGACTGGTACACCGGTCGTGGGTCGACTTTTGTGTTGTTTTAAAATTTT--A 2090
Query 2088 GGGTTATAAAAACTTACAGTGGAGTCTTTTGTTTTTGTGTTGACAACAGTTTGTATGTCG 2147
| || |||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2091 ------------C--AC--TGGAGTCTTT-GTTTTTGTGTTCACAACAGTTTGTATGTCG 2133
Query 2148 GTTAAAAA 2155
||||||||
Sbjct 2134 GTTAAAAA 2141
> Ahg474778 jgi|Araly1|474778|fgenesh2_kg.1__4732__AT1G55035.1
Length=1159
Score = 974 bits (527), Expect = 0.0
Identities = 990/1204 (82%), Gaps = 69/1204 (6%)
Strand=Plus/Plus
Query 236 ATGTCACTGAGA-CCCAACGCTAAGA-CGGAGGTTCGCCGGAA-CCGATACAAAGTTGCA 292
||||| |||| | || ||| | ||| ||||||| |||||||| | | ||||| |||||
Sbjct 1 ATGTCGCTGA-ATCCTAACAC-CAGAGCGGAGGTCCGCCGGAATCAG-TACAAGGTTGCG 57
Query 293 GTGGATGCGGAGGAAGGACGACGGAGGAGAGAAGAC-AACATGGTTGAGATCCGTAAAAG 351
|||||||| ||||| ||||||||||||||||||| | |||||||||||| | |||||||
Sbjct 58 GTGGATGCAGAGGAGGGACGACGGAGGAGAGAAG-CAAACATGGTTGAGGTTCGTAAAAT 116
Query 352 CAAGCGTGAGGAGAGTTTGATGAAGAAGAGACGTGAAGGTATGCAAGCTCTTCAGGGTTT 411
|||||| ||||||||| ||||||||||||| |||||| | | |||| | | ||
Sbjct 117 CAAGCGAGAGGAGAGTCTGATGAAGAAGAGGCGTGAA-G--T------TCTTAATGAATT 167
Query 412 CCCTTCAGCTTCCGCCGCCTCCGTCGATAAGAAGTTGGATAGTCTGAAGGATATGGTCGC 471
| || | | | | ||||||| ||||||||| ||| || ||||||||||||
Sbjct 168 --C-TC-G-----G--G-TTTGGTCGATACGAAGTTGGAGAGTTTGTCGGATATGGTCGC 215
Query 472 TGGGGTTTGGTCCGATGACCCTGCCTTGCAGCTTGAGTCCACTACTCAGTTCAGGAAGCT 531
|||||||| ||| ||||| |||||||||||| |||| |||||||| ||||| ||||
Sbjct 216 TGGGGTTTTGTCGGATGATATTGCCTTGCAGCTCAAGTCAACTACTCAAATCAGGGAGCT 275
Query 532 TCTCTCTATTGAGAGAAG-TCCTCCAATCGAGGAAGTGATAAG-TGCTGGTGTTGTTCCT 589
||| |||| | ||| || |||||||||||| |||||||| || | ||||||||||||||
Sbjct 276 TCTATCTAGGGCGAG-AGATCCTCCAATCGACGAAGTGAT-AGATTCTGGTGTTGTTCCT 333
Query 590 AGGTTTGTTGAGTTTCTTAAGAAAGAAGATTACCCCGCCATTCAGTTTGAGGCAGCTTGG 649
|||| |||||||||||||||||||||||| |||| ||||||| |||||||||||||
Sbjct 334 CGGTTCGTTGAGTTTCTTAAGAAAGAAGATAACCCTAATATTCAGTATGAGGCAGCTTGG 393
Query 650 GCTCTAACAAACATTGCATCTGGAACATCGGATCACACTAAGGTTGTAATCGATCACAAT 709
||||||||||||||||||||||||||||| ||||| || ||||||||| | |||||||||
Sbjct 394 GCTCTAACAAACATTGCATCTGGAACATCAGATCATACAAAGGTTGTAGTAGATCACAAT 453
Query 710 GCTGTTCCAATCTTTGTTCAGCTTCTTGCTTC--CCCTA-GCGATGATGTTCGTGAAC-A 765
||||||||||| ||||| |||||||||||||| ||| | |||||||||| ||||||| |
Sbjct 454 GCTGTTCCAATTTTTGTCCAGCTTCTTGCTTCTTCCCCAAGCGATGATGTCCGTGAACTA 513
Query 766 GGCTGTATGGGCTTTGGGTAACGT-TGCTGGTGATTCACCACGGTGCCGTGATCT-TGTT 823
| |||||||||| || |||||||| | ||| ||||||| | | ||||||||| | |||
Sbjct 514 G-CTGTATGGGCGTTAGGTAACGTGT-CTGCTGATTCATCGCAATGCCGTGAT-TATGTC 570
Query 824 CTTGGATGTGGGGCACT-GCTTCCGCTGCTCAATCAGCTTAATGAGCATGCTAAATTGTC 882
|| ||||||| ||||| | ||||||| ||||||||||||||||||||| | |||||||
Sbjct 571 CTCAGATGTGGAGCACTTG-TTCCGCTTCTCAATCAGCTTAATGAGCATACCGAATTGTC 629
Query 883 CATGCTTCGA-AATGCCACTTGGACCTTGTCAAACTTCTGTCGTGGCAAGCCTCAGCCTC 941
|||||| || || | ||| ||||| |||||| |||| ||| ||| | | | || |
Sbjct 630 TATGCTTAGAGAA-GTCACATGGACTTTGTCACACTTGTGTGGTG--ATGGCA-AGGCGA 685
Query 942 ACTTTGACCAGGTCAAACCTGCTCTTCCCGCCCTTGAACGACTAATTCATTC-AGATGAT 1000
| | || | || | ||| | | |||||||||||| |||||||||| | ||||
Sbjct 686 A-TC---CC-G--CAG-C--GCT-T-CAAGCCCTTGAACGAGTAATTCATTCTAC-TGAT 732
Query 1001 GAAGAAGTCTTGACAGATGCCTGTTGGGCTCTTTCTTACCTCTCTGATGGGACCAATGAC 1060
||| ||||||||||| |||| ||||||||||| | |||||||| |||||| ||||||
Sbjct 733 GAACAAGTCTTGACAAATGCTTGTTGGGCTCTCAAATCCCTCTCTGGTGGGACTAATGAC 792
Query 1061 AAAATCCAGACTGTCATCCAGGCCGGTGTTGTCCCAAAACTTGTTGAACTTCTCCTCCAT 1120
|||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||
Sbjct 793 AAAATCCAGAATGTCATCGAGGCCGGTGTTGTACCAAGACTTGTTGAACTTCTCCTCCAT 852
Query 1121 CATTCTCCATCTGTGCTAATTCCTGCTCTTCGCACTGTTGGAAATATAGTTACTGGAGAT 1180
| |||| ||||||| |||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 853 CCTTCTATATCTGTGGTAATTCCTGCGCTTCGCACAGTTGGAAATATAGTTACTGGAGAT 912
Query 1181 GATATACAAACACAGTGCGTGATCA-ATAGTGGTGCTCTACCTTGTCTTGCCAACCTGCT 1239
||| ||||||| ||||| ||||| | ||||||||||| |||||||| ||| |||||| ||
Sbjct 913 GATCTACAAACGCAGTGTGTGAT-AGATAGTGGTGCTTTACCTTGTTTTGTCAACCTTCT 971
Query 1240 CACTCAAAACCATAAGAAAAGCATAAAGAAGGAAGCTTGCTGGACGATTTCAAACATCAC 1299
||||||||| ||||||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct 972 AACTCAAAACTATAAGAAAAATATTAAGAAGGAAGCTTGTTGGACGATTTCGAACATCAC 1031
Query 1300 AGCAGGCAACAAA-GATCAGATCCAGACGGTAGTTGAGGCTAATTTGATTTCCCCGTTGG 1358
|||||| |||| | || |||||||||| |||| | ||| ||||||||||| |||| || |
Sbjct 1032 AGCAGG-AACACATGAACAGATCCAGATGGTAATAGAGTCTAATTTGATTGCCCCCTTAG 1090
Query 1359 TGAGTCTGCT-TCAAAATGCTGAATTTGACATTAAGAAGGAAGCTGCATGGGCAATTTCA 1417
| | |||| | |||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1091 TTAATCTG-TGTCAATATGCTGAATTTGACATTAAGAAAGAAGCTGCATGGGCAATTTCC 1149
Query 1418 AATG 1421
||||
Sbjct 1150 AATG 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87759924480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5