BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06730.1
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477988 jgi|Araly1|477988|fgenesh2_kg.3__689__AT3G06730.1 1009 0.0
> Ahg477988 jgi|Araly1|477988|fgenesh2_kg.3__689__AT3G06730.1
Length=691
Score = 1009 bits (546), Expect = 0.0
Identities = 594/618 (96%), Gaps = 0/618 (0%)
Strand=Plus/Plus
Query 1 TCTAAAACCCCTCAAAAGCTAAAACTGAAATCATTTTGAAGCAGAAATCGATTTCCAAAA 60
|||||||||| | |||||| |||||||||||||||| | || || ||||||||||| |||
Sbjct 1 TCTAAAACCCGTAAAAAGCGAAAACTGAAATCATTTAGCAGTAGTAATCGATTTCCGAAA 60
Query 61 TGGCTCTTGTTCAATCCAGAACTTTTCCACACCTCAACACTCCGTTATCGCCGATTCTAT 120
||||||||||||||||||||||| ||||||| |||||| ||||||| |||||||||||||
Sbjct 61 TGGCTCTTGTTCAATCCAGAACTCTTCCACATCTCAACGCTCCGTTGTCGCCGATTCTAT 120
Query 121 CCTCCCTCCATGCTCCGTCTTCTCTCTTTATCCGGAGGGAAATCCGACCGGTAGCCGCGC 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 121 CCTCCCTCCATGCTCCGTCTTCTCTCTTTCTCCGGAGGGAAATCCGACCGGTAGCCTCGC 180
Query 181 CGTTCTCCTCCTCCACCGCCGGAAACTTGCCCTTCTCGCCGTTGACGCGTCCGCGAAAGC 240
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 181 CGTTCTCCTCCTCCACTGCCGGAAAGTTGCCCTTCTCGCCGTTGACGCGTCCGCGGAAGC 240
Query 241 TTCTCTGTCCTCCGCCTCGCGGCAAGTTTGTCAGAGAAGATTATCTTGTGAAGAAATTGT 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCTCTGTCCTCCGCCTCGCGGAAAGTTTGTCAGAGAAGATTATCTTGTGAAGAAATTGT 300
Query 301 CAGCTCAAGAACTTCAGGAACTGGTGAAAGGAGATAGGAAGGTGCCGTTGATTGTTGATT 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAGCTCAAGAACTTCAAGAACTGGTGAAAGGAGATAGGAAGGTGCCGTTGATTGTTGATT 360
Query 361 TTTATGCGACATGGTGTGGACCTTGTATCTTGATGGCCCAGGAACTAGAAATGCTTGCAG 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTATGCGACATGGTGCGGACCTTGTATCTTGATGGCCCAGGAACTAGAAATGCTTGCAG 420
Query 421 TAGAGTATGAGAGCAATGCAATAATCGTGAAAGTTGATACAGATGATGAGTACGAGTTTG 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 TAGAGTATGAGAGCAATGCAATAATCGTGAAAGTCGATACAGATGATGAGTACGAGTTTG 480
Query 481 CACGCGACATGCAGGTTCGAGGGTTACCTACATTATTCTTCATCAGTCCTGACCCAAGCA 540
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 481 CACGCGACATGCAGGTTCGAGGCTTACCTACATTATTCTTCATCAGTCCTGATCCAAGCA 540
Query 541 AAGATGCAATCAGGACAGAAGGGCTAATTCCGTTACAGATGATGCACGATATCATTGACA 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 AAGATGCAATCAGGACAGAAGGGCTAATTCCATTACAGATGATGCACGATATCATTGACA 600
Query 601 ACGAGATGTGAAGTTTTT 618
||||||||||||||||||
Sbjct 601 ACGAGATGTGAAGTTTTT 618
Score = 111 bits (60), Expect = 7e-24
Identities = 70/75 (93%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 649 TTTGATTAGAATCGCCGTAATTTAGGATTGGTACCGTGTTGTTTGCATTTGAGATGTGGT 708
||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 617 TTTGAATAGAATCGCCGTAATTTAGGATTGGTACCGAGTTGTTTGCATTTGATATGTGGT 676
Query 709 AAGAATGTCTTCTAG 723
||||| ||| |||||
Sbjct 677 AAGAACGTCATCTAG 691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33662535711
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5