BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G06740.1 Length=896 Score E Sequences producing significant alignments: (Bits) Value Ahg477989 jgi|Araly1|477989|fgenesh2_kg.3__690__AT3G06740.1 1077 0.0 > Ahg477989 jgi|Araly1|477989|fgenesh2_kg.3__690__AT3G06740.1 Length=863 Score = 1077 bits (583), Expect = 0.0 Identities = 808/906 (89%), Gaps = 57/906 (6%) Strand=Plus/Plus Query 3 GGTATCTGTT-GG--G-TCGTTTCTTTGAAATCaaaaaaaaaaaatctctgtttctctga 58 |||||||||| || | ||||||||||||||| ||||||| |||||||||||||||| Sbjct 1 GGTATCTGTTGGGTCGTTCGTTTCTTTGAAAT---TAAAAAAATATCTCTGTTTCTCTGA 57 Query 59 cactctctctctctgtttctACTTTCAAGATTCAAATTTTTG-TTCCCCTGATCCACTCG 117 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 58 CACTCTCTCTCTCTGTTTCTACTTTCAAGATTCAAATTTTTGTTTCCCCTGATCCACTCG 117 Query 118 TCTTTGAATTCTCATCAAGTCTTATATGTTTCTTGCCTACTCTGATCTCTATCGGAAACC 177 |||||||| | |||| | || ||||||||||| |||||||||||||| |||||| Sbjct 118 TCTTTGAA-T-TCAT--A-TC-----TGTTTCTTGCC-ACTCTGATCTCTATTTGAAACC 166 Query 178 CTAGATCCATATCTTCTTGACTTGACACTAGTTCACGAATCACGATCTGCGGTTC-CTGA 236 ||||||||||||||||| |||||||||||| | |||||||||||||||| | || Sbjct 167 CTAGATCCATATCTTCTCCACTTGACACTAG-T------TCACGATCTGCGGTTCTCCGA 219 Query 237 AGCTGGTAATGCTAGATCCCACCGAG--AA-AGTAATCGATTCAGAATCAATGGAAAGCA 293 ||||||||||||||||||| |||||| || ||| ||||||||||| | |||||||||| Sbjct 220 AGCTGGTAATGCTAGATCCTACCGAGAAAACAGTTATCGATTCAGAGGCCATGGAAAGCA 279 Query 294 AACTCACATCAGTAGATGCGATCGAAGAACACAGCAGC---AGTAGCAGTAATGAAGCTA 350 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 280 AACTCACATCAGTAGATGCGATCGAAGAACACAGCAGCAGTAGTAGCAGTAATGAAGGTA 339 Query 351 TCAGCAACGAGAAGAAGAGTTGTGCCATTTGTGGTACCAGCAAAACCCCTCTTTGGCGAG 410 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 340 TCAGCAACGAGAAGAAGAGTTGTGCCATTTGTGGTACTAGCAAAACCCCTCTTTGGCGAG 399 Query 411 GCGGTCCTGCCGGTCCCAAGTCGCTTTGTAACGCATGCGGgatcagaaacagaaagaaaa 470 ||||||| ||||||||||||||||| |||||||||||||||||| ||||||| ||||| | Sbjct 400 GCGGTCCCGCCGGTCCCAAGTCGCTATGTAACGCATGCGGGATCCGAAACAGGAAGAAGA 459 Query 471 gaagaacactgatctcaaatagatcagaagataagaagaagaagagtcataacagaaaCC 530 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 460 GAAGAACACTGATCTCAAATAGATCAGAAGATAAGAAGAAGAAGAATCATAACAGAAATC 519 Query 531 CGAAGTTTGGTGACTCGTTGAAGCAGCGATTAATGGAATTGGGGAGAGAAGTGATGATGC 590 | ||||| |||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 520 CAAAGTTCGGTGACTCGTTGAAGCAGAGACTAATGGAATTGGGGAGAGAAGTGATGATGC 579 Query 591 AGCGATCAACGGCTGAGAATCAACGGCGGAATAAGCTTGGCGAAGAAGAGCAAGCCGCCG 650 ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| | Sbjct 580 AGCGATCAACGGCTGAGAATCAACGACGGAAGAAGCTCGGCGAAGAAGAGCAAGCCGCTG 639 Query 651 TGTTACTCATGGCTCTCTCTTATGCTTCTTCCGTTTATGCTTAACGAATTTTCTGGATCT 710 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 640 TGTTACTCATGGCTCTCTCTTATGCTTCTTCCGTTTATGCTTAACGAATTTTCTGGATCT 699 Query 711 TAAGTTTTAAGGTGAAA--TAATAATTAATTTTGTAGGATGTGTAACGAATTAATGTGTA 768 | | || ||| | | | | ||| ||||||||||||||||||||||||||||||||| Sbjct 700 TTACCTTAAAGTTTTCAGGTGA-AATAAATTTTGTAGGATGTGTAACGAATTAATGTGTA 758 Query 769 ATTTTTGTATGCGtttttttGGTGTTGTTTGAATTAACTAAATTTTGAAATTTTTGTATC 828 |||||||| | || | | ||| ||||||||||||||||||||||||||||| Sbjct 759 ATTTTTGT--G--TT-----G-T-TTG----AATTAACTAAATTTTGAAATTTTTGTATC 803 Query 829 TTGTTTATGTGATCTCTGGTGAAGAATGAATGAATGAATGAAAGGTCAAAATGATTTTCT 888 | ||||||||||||| ||||||||||||||||||||| | |||||| |||||||||| Sbjct 804 TGGTTTATGTGATCT--GGTGAAGAATGAATGAATGAA--A--GGTCAAGATGATTTTCT 857 Query 889 TCCGAC 894 |||||| Sbjct 858 TCCGAC 863 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33205060707 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5