BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06740.1
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477989 jgi|Araly1|477989|fgenesh2_kg.3__690__AT3G06740.1 1077 0.0
> Ahg477989 jgi|Araly1|477989|fgenesh2_kg.3__690__AT3G06740.1
Length=863
Score = 1077 bits (583), Expect = 0.0
Identities = 808/906 (89%), Gaps = 57/906 (6%)
Strand=Plus/Plus
Query 3 GGTATCTGTT-GG--G-TCGTTTCTTTGAAATCaaaaaaaaaaaatctctgtttctctga 58
|||||||||| || | ||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1 GGTATCTGTTGGGTCGTTCGTTTCTTTGAAAT---TAAAAAAATATCTCTGTTTCTCTGA 57
Query 59 cactctctctctctgtttctACTTTCAAGATTCAAATTTTTG-TTCCCCTGATCCACTCG 117
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 58 CACTCTCTCTCTCTGTTTCTACTTTCAAGATTCAAATTTTTGTTTCCCCTGATCCACTCG 117
Query 118 TCTTTGAATTCTCATCAAGTCTTATATGTTTCTTGCCTACTCTGATCTCTATCGGAAACC 177
|||||||| | |||| | || ||||||||||| |||||||||||||| ||||||
Sbjct 118 TCTTTGAA-T-TCAT--A-TC-----TGTTTCTTGCC-ACTCTGATCTCTATTTGAAACC 166
Query 178 CTAGATCCATATCTTCTTGACTTGACACTAGTTCACGAATCACGATCTGCGGTTC-CTGA 236
||||||||||||||||| |||||||||||| | |||||||||||||||| | ||
Sbjct 167 CTAGATCCATATCTTCTCCACTTGACACTAG-T------TCACGATCTGCGGTTCTCCGA 219
Query 237 AGCTGGTAATGCTAGATCCCACCGAG--AA-AGTAATCGATTCAGAATCAATGGAAAGCA 293
||||||||||||||||||| |||||| || ||| ||||||||||| | ||||||||||
Sbjct 220 AGCTGGTAATGCTAGATCCTACCGAGAAAACAGTTATCGATTCAGAGGCCATGGAAAGCA 279
Query 294 AACTCACATCAGTAGATGCGATCGAAGAACACAGCAGC---AGTAGCAGTAATGAAGCTA 350
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 280 AACTCACATCAGTAGATGCGATCGAAGAACACAGCAGCAGTAGTAGCAGTAATGAAGGTA 339
Query 351 TCAGCAACGAGAAGAAGAGTTGTGCCATTTGTGGTACCAGCAAAACCCCTCTTTGGCGAG 410
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 340 TCAGCAACGAGAAGAAGAGTTGTGCCATTTGTGGTACTAGCAAAACCCCTCTTTGGCGAG 399
Query 411 GCGGTCCTGCCGGTCCCAAGTCGCTTTGTAACGCATGCGGgatcagaaacagaaagaaaa 470
||||||| ||||||||||||||||| |||||||||||||||||| ||||||| ||||| |
Sbjct 400 GCGGTCCCGCCGGTCCCAAGTCGCTATGTAACGCATGCGGGATCCGAAACAGGAAGAAGA 459
Query 471 gaagaacactgatctcaaatagatcagaagataagaagaagaagagtcataacagaaaCC 530
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 460 GAAGAACACTGATCTCAAATAGATCAGAAGATAAGAAGAAGAAGAATCATAACAGAAATC 519
Query 531 CGAAGTTTGGTGACTCGTTGAAGCAGCGATTAATGGAATTGGGGAGAGAAGTGATGATGC 590
| ||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 520 CAAAGTTCGGTGACTCGTTGAAGCAGAGACTAATGGAATTGGGGAGAGAAGTGATGATGC 579
Query 591 AGCGATCAACGGCTGAGAATCAACGGCGGAATAAGCTTGGCGAAGAAGAGCAAGCCGCCG 650
||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct 580 AGCGATCAACGGCTGAGAATCAACGACGGAAGAAGCTCGGCGAAGAAGAGCAAGCCGCTG 639
Query 651 TGTTACTCATGGCTCTCTCTTATGCTTCTTCCGTTTATGCTTAACGAATTTTCTGGATCT 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TGTTACTCATGGCTCTCTCTTATGCTTCTTCCGTTTATGCTTAACGAATTTTCTGGATCT 699
Query 711 TAAGTTTTAAGGTGAAA--TAATAATTAATTTTGTAGGATGTGTAACGAATTAATGTGTA 768
| | || ||| | | | | ||| |||||||||||||||||||||||||||||||||
Sbjct 700 TTACCTTAAAGTTTTCAGGTGA-AATAAATTTTGTAGGATGTGTAACGAATTAATGTGTA 758
Query 769 ATTTTTGTATGCGtttttttGGTGTTGTTTGAATTAACTAAATTTTGAAATTTTTGTATC 828
|||||||| | || | | ||| |||||||||||||||||||||||||||||
Sbjct 759 ATTTTTGT--G--TT-----G-T-TTG----AATTAACTAAATTTTGAAATTTTTGTATC 803
Query 829 TTGTTTATGTGATCTCTGGTGAAGAATGAATGAATGAATGAAAGGTCAAAATGATTTTCT 888
| ||||||||||||| ||||||||||||||||||||| | |||||| ||||||||||
Sbjct 804 TGGTTTATGTGATCT--GGTGAAGAATGAATGAATGAA--A--GGTCAAGATGATTTTCT 857
Query 889 TCCGAC 894
||||||
Sbjct 858 TCCGAC 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33205060707
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5