BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06750.1
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477990 jgi|Araly1|477990|fgenesh2_kg.3__691__AT3G06750.1 839 0.0
Ahg494989 jgi|Araly1|494989|fgenesh2_kg.8__805__AT5G49280.1 102 3e-21
> Ahg477990 jgi|Araly1|477990|fgenesh2_kg.3__691__AT3G06750.1
Length=641
Score = 839 bits (454), Expect = 0.0
Identities = 541/580 (93%), Gaps = 17/580 (3%)
Strand=Plus/Plus
Query 13 tctctctctct-tttcttctttcatcttctctcttcCTTATCACTTGACTTTAGTCCAAA 71
||||||||||| ||| | |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 TCTCTCTCTCTCTTT-TGCTTTCATCTTCTCTCTTCCTTATCACTTGATTTTAGTCCAAA 59
Query 72 TCTCTAGCTCATTTGTCAGACAAC-AAATTTCTGACAATGGAAGCAATCAGATTCTCTAA 130
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||
Sbjct 60 TCTCTAGCTCATTTGTCAGACAACAAAATTTCCGACAATGGAAGCAATCAGATTCTCGAA 119
Query 131 TTTGTCAGGTCTTCTTATTCTCTTAATGTCACTGCCTCTTTTAGTGACTTCAAAGGACGA 190
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
Sbjct 120 TTTGTCAGGTCTTCTTATACTGTTAATGTCACTGCCTCTTTTAGTGACTTCAAAGGACCA 179
Query 191 AACTGTTTCTTGCACAATGTGTTCCTCTTGCGACAATCCATGTAATCCTGTCCCATCTTC 250
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 AACTATTTCTTGCACAATGTGTTCCTCTTGCGACAATCCTTGTAATCCTGTCCCATCTTC 239
Query 251 TTActctcctcctcctcctccGCCATCAAGCTCCGGTGGCGGTGGATCTTATTATTACTC 310
||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 TTA--CT-CTCCTCCTCCTCCGCCTTCAAGCTCCGGTGGCGGTGGATCTTATTATTACTC 296
Query 311 TCCTCCTCCTCCTTCAAGCTCCGGTGGTGTTAAATACCCGCCTCCGTACGGCGGCGACGG 370
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 297 TCCTCCTCCTCCTTCAAGCTCCGGTGGTGCTAAATACCCGCCTCCGTACGGTGGCGACGG 356
Query 371 CTACGGTGG-C-----TA-T-T-ATCCGCCTCCTTACTACGGCAATTACGGGACACCACC 421
|||||||| | || | | |||||||||||||||||||||||||||||||||||||
Sbjct 357 ATACGGTGGACAAGGCTACTATTATCCGCCTCCTTACTACGGCAATTACGGGACACCACC 416
Query 422 ACCACCGAATCCGATCGTTCCTTATTTTCCGTTTTACTATCATACTCCTCCTCAGGGATA 481
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 417 ACCGCCGAATCCGATCGTTCCTTATTTTCCGTTTTACTATCACACTCCTCCTCAGGGAAA 476
Query 482 TTCAGGCTCGGCTCGTTTACA-GAATTCTCTCCTCTTTGCTCTGTTCGCCGTCTTGCTCT 540
||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 477 TTCTGGTTCGGCTCGCTTACATGA-TTCTCTCCTCTTTGCTCTGTTCGCCGTCTTGCTCT 535
Query 541 GTTTTGTGTGACGGCGATTCATCTGTATTTGGCCGGGAAA 580
||||||||| |||| ||||||||||||||| |||||||||
Sbjct 536 GTTTTGTGTAACGGAGATTCATCTGTATTTAGCCGGGAAA 575
> Ahg494989 jgi|Araly1|494989|fgenesh2_kg.8__805__AT5G49280.1
Length=853
Score = 102 bits (55), Expect = 3e-21
Identities = 168/220 (76%), Gaps = 17/220 (8%)
Strand=Plus/Plus
Query 257 tcctcctcctcctccGCCAT-CAAGCTCCGGTGGCGGTGGATCTTATTATTACTCTCCTC 315
|||||| |||||| | || | ||||||||||||||||| | ||||| ||||| | ||||
Sbjct 310 TCCTCCCCCTCCTTCTCC-TCCAAGCTCCGGTGGCGGTAGCTCTTACTATTA--C-CCTC 365
Query 316 CTCCTCCTTCAAGCTCCGGT---GGTGTTAAATACCCGCCTCCGTACGGCGGCGACGGCT 372
||||| | || || |||||| || | |||||||| || || ||||| |||| || |
Sbjct 366 CTCCTTC-TC-AG-TCCGGTGGAGGCGGCAAATACCCTCCACCTTACGGTGGCGGTGG-T 421
Query 373 -ACGGTGGCTATTATCCGCCTCCTTACTAC-GGCAATTA-CGGGACACCACCACCACCGA 429
| ||| || ||||| || || || | | || || || | | || || || ||||
Sbjct 422 CAAGGTTATTACTATCCTCCGCCGTA-TTCAGGAAACTATC-CTATGCCGCCTCCGCCGA 479
Query 430 ATCCGATCGTTCCTTATTTTCCGTTTTACTATCATACTCC 469
|||||||||| |||||||||||||||||||||||||||||
Sbjct 480 ATCCGATCGTCCCTTATTTTCCGTTTTACTATCATACTCC 519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25466108556
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5