BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06760.2
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477991 jgi|Araly1|477991|fgenesh2_kg.3__692__AT3G06760.1 841 0.0
> Ahg477991 jgi|Araly1|477991|fgenesh2_kg.3__692__AT3G06760.1
Length=966
Score = 841 bits (455), Expect = 0.0
Identities = 529/564 (94%), Gaps = 7/564 (1%)
Strand=Plus/Plus
Query 560 GGAGAAGGTTGCGAAGAGGAGGATATAGCTCTACCTATCTCGCCTTGAAAAAGGAACTCC 619
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 406 GGAGAAGGTTGCGAAGAGGAGGATATAGCTCTACCTATCTTGCCTTGAAAAAGGAACTCC 465
Query 620 GGGAAGCAAACCTACAGTCTCTTCTTGGTGGATCTTCAAGTTTCACTTCTTCAACCAATA 679
| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 466 GAGAAGCAAACTTACAGTCTCTTCTTGGTGGATCGTCAAGTTTCACTTCTTCAACCAATA 525
Query 680 TCGATTCTGATCCGTTGCTGTCATCCTTTATGTTTAATTCTCCTTCAGTGAACCAGTCTG 739
|||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 526 TCGATTCTGATCCGCTGCTGTCATCCTTTATGTTTAATTCTTCTTCAGTGAATGAGTCTG 585
Query 740 CAAACAAATCTGCTACACCTGTGACTGTAGGAAACGCGGCTACAAAAGTCTCGATTAAGG 799
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 586 CAAAAAAATCTGCTACACCTGTGACGGTAGGAAACGCGGCTACGAAAGTCTCGATTAAGG 645
Query 800 AATCTCTCAAAAGAGACATTCAAGAAGCTCCACTTTCAGGTGAAGATCAGGAGAAGGCGA 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 646 AATCTCTCAAAAGAGACATTCAAGAAGCTCCACTTTCAGGTGAAGATCAAGAGAAGGCGA 705
Query 860 AAAAGAGTGAGTTTGTGCGAGGCTTGTTGTTGTCAACCATGCTTGAAGACGATTTCTAA- 918
||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||
Sbjct 706 AAAAGAGTGAGTTTGTGGGAGGTTTGTTGTTGTCAACCATGCTTGGAGACGATTTCTAAA 765
Query 919 TTTCTCGTTATAAATCCATTGCCTTGTTGTGGTTGGTGCATGAGACTTGAGGA-TCTCAG 977
|||| ||||| || ||| ||||||||||||||||| |||||||||| | |||| || ||
Sbjct 766 TTTCACGTTA-AA-TCCCTTGCCTTGTTGTGGTTGATGCATGAGACGTAAGGAATCGGAG 823
Query 978 GTTGGAATTGTTAGGAGTGGTTTCAATGTATGATGCAAAATA--TTGTAAGTTATAAGAG 1035
||||||||||||||||||||| ||||||||| |||||||| | |||||||||||||| |
Sbjct 824 GTTGGAATTGTTAGGAGTGGTCTCAATGTATAATGCAAAA-ACCTTGTAAGTTATAAGGG 882
Query 1036 GATGCAGAGTTGCATCCATATATAATTGTCATTTGTACCTTGGAACCTTTATGTGCATAA 1095
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 883 GATGCAGAGTTGCATCCATATATTATTGTCATTTGTACCTTGGAACCTTTATGTGCATAA 942
Query 1096 CCGGAAACAGAGTACTTTCCTTTC 1119
||||||||||||| |||||||||
Sbjct 943 GCGGAAACAGAGTATTTTCCTTTC 966
Score = 520 bits (281), Expect = 1e-146
Identities = 307/319 (96%), Gaps = 3/319 (1%)
Strand=Plus/Plus
Query 128 tctctctctctACCGTCCTTCTAGGGTTTCTTTGATCACATTCAAATTTGTCGCCTTTAA 187
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TCTCTCTCTCTACCGTCCTTCTAGGGTTTCTTTGATCACATTCAAATTTGTCTCCTTTAA 60
Query 188 TCTCAATCCTGTAAGAATCAGAGGATATGGATTCCAA-T--TGGATCAATTGTCCCTCTG 244
|||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 61 TCTCAATCCTGTAACAATCAGAGGATATGGATTCCAATTCATGGATCAATTGTCCCTCTG 120
Query 245 TTTTCTCCTCATCCTCTTCTTCTTCCAGACGCTGTCAATCCCGATCAGACTTGTATTTAG 304
||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 121 TTTTCTCTTCATCCTCTTCTTCTTCGAGACGGTGTCAATCCCGATCAGATTTGTATTTAG 180
Query 305 GAGGAGGGTACGAGGATCTTGAAGGAGAAGACGATTTGAAGGCAGAGTTTATATGCCCTT 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 GAGGAGGGTACGAGGATCTTGAAGGAGAAGACGATTTGAAGGCAGAGTTTATATGCCCCT 240
Query 365 TTTGCGCTGAAGATTTTGACATTGTTGGGCTTTGTTGTCACATTGATGAAGAACATCCTG 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTGCGCTGAAGATTTTGACATTGTTGGGCTTTGTTGTCACATTGATGAAGAACATCCTG 300
Query 425 TTGAAGCCAAGAATGGGGT 443
| ||||||||||| |||||
Sbjct 301 TCGAAGCCAAGAACGGGGT 319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41706471198
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5