BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06770.2
Length=1855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477994 jgi|Araly1|477994|fgenesh2_kg.3__695__AT3G06770.2 2531 0.0
Ahg494984 jgi|Araly1|494984|fgenesh2_kg.8__800__AT5G49215.2 91.6 2e-17
> Ahg477994 jgi|Araly1|477994|fgenesh2_kg.3__695__AT3G06770.2
Length=1694
Score = 2531 bits (1370), Expect = 0.0
Identities = 1600/1708 (94%), Gaps = 27/1708 (2%)
Strand=Plus/Plus
Query 161 TCTTTAATTATCCGACAGCTTCGTTACAAATAAAGATGTCAGTGGTAACAATCTTGATAC 220
||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1 TCTTTTATTATCCGACAGCATCGTTACAAATAAAGATGTCAGTGGTAATAATCTTGATAC 60
Query 221 TGGCATTAACCAGTGTTATTCCCATTTACGCAAACGTTCACGGCGCCGGGAAAATATGCG 280
|||||||||||||| | ||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct 61 TGGCATTAACCAGTCTGATTCCGATTTACGCAAAAGTTCTCGGCGCCGGGAAAATATGCG 120
Query 281 ACGAACTTGGCCGGCGATCATTGAGTACAAGACCACACAGTGTCTCCATTACAGATTTTG 340
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACGAACTTGGCCGGATATCATTGAGTACAAGACCACACAGTGTCTCCATTACAGATTTTG 180
Query 341 GAGCTGTTGGAGATGGCAAAACGCTCAACACTCTTGCGTTTCAAAACGCCGTTTTCTATC 400
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGCTGTGGGAGATGGCAAAACGCTCAACACTCTTGCGTTTCAAAACGCCGTTTTCTATC 240
Query 401 TTATGTCTTTCGCCGACAAAGGTGGGGCCCAGCTCTATGTTCCGCCGGGACATTGGCTCA 460
||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||||||
Sbjct 241 TTATGTCTTTCGCCGACAAAGGTGGAGCCCAGCTTTATGTCCCGCCGGGAAATTGGCTCA 300
Query 461 CCGGGAGTTTTAGCCTCACCAGCCACCTCACTCTCTTTCTCGAAAACGGCGCCGTTATAG 520
|||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 301 CCGGTAGTTTCAGCCTCACCAGCCATCTCACTCTTTTTCTCGAAAACGGCGCCGTTATAG 360
Query 521 TCGCTTCTCAGGATCCATCGCATTGGGAAGTGGTTGATCCTTTACCTTCATACGGAAGGG 580
|||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 361 TCGCCTCTCAGGATCCATCGCATTGGGAAGTTGTTGATCCCTTACCTTCGTACGGAAGGG 420
Query 581 GAATTGATTTGCCTGGGAAGCGATACAAGAGTTTGATCAACGGTAACAAGCTACATGATG 640
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 GAACTGATTTGCCTGGGAAGCGATACAAGAGTTTGATCAACGGTAACATGCTACATGATG 480
Query 641 TTGTTGTAACAGGTGATAATGGAACTATAGATGGTCAAGGCTTGGTTTGGTGGGATCGGT 700
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 TTGTTGTAACAGGTGATAATGGAACCATAGATGGTCAAGGCTTGGTTTGGTGGGATCGGT 540
Query 701 TTACTTCTCATTCCTTAAAGTATAACCGTCCTCACCTCATCGAGTTTCTTTCTTCTGAAA 760
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 TTACTTCTCATTCCTTAAAGTATAACCGTCCTCACCTCATCGAGTTTCTTTCTTCTAAAA 600
Query 761 ATGTAATTGTCTCCAATCTTACGTTCTTGAATGCTCCTGCTTATTCAATCTATTCAATCT 820
||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||
Sbjct 601 ATGTAATTGTCTCCAATCTTACGTTCTTGAATGCTCCAGCTTATACAATCCATTCAATCT 660
Query 821 ACTCTAGCCATGTATATATTCATAAGATATTGGCCCATTCTTCTCCTAAATCTCCTTATA 880
|||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||
Sbjct 661 ACTCTAGCCATGTATATATTCATAAGATATTGGCTCATTCTCCTCCCGAATCTCCTTATA 720
Query 881 CAATCGGTATTGTACCAGATTCTTCTGATTACGTCTGCATCCAAAACTCTACCATTAACG 940
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 CAATCGGTATAGTACCAGATTCTTCTAATTACGTCTGCATCCAAAACTCTACCATTAACG 780
Query 941 TGGGGTATGACGCGATTTCCCTCAAAAGCGGTTGGGATGAATATGGAATTGCCTATTCTC 1000
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGGGGTATGACGCCATCTCCCTCAAAAGCGGTTGGGATGAATATGGAATTGCCTATTCTC 840
Query 1001 GTCCCACTGAAAATGTTCATATAAGAAATGTGTACCTTCGAGGAGCTTCTGGTTCCTCTA 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 841 GTCCCACTGAAAATGTTCATATAAGAAATGTGTACCTTCGAGGAGCTTCTGGTTCGTCTA 900
Query 1061 TCTCCTTTGGCAGTGAAATGTCTGGTGGAATATCTGATGTCGTGGTTGATAACGCTCATA 1120
| |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 901 TTTCCTTTGGCAGTGAAATGTCTGGTGGAATATCTGATGTCGTGGTCGATAATACCCATA 960
Query 1121 TACACTACTCGTTAACCGGCATTGCCTTTAGAACCACAAAAGGCAGAGGTGGTTATATCA 1180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 961 TACACAACTCGTTAACCGGCATTGCCTTTAGAACCACAAAAGGCAGAGGTGGTTACATCA 1020
Query 1181 AAGAGATCGATATTTCAAACATCGATATGT-TGAGAATAGGTACTGCCATTGTTGCTAAT 1239
|||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 1021 AAGAGATCGATATTGCAAACATCGATATGTCT-AGAATAGGTACTGCCATTGTGGCTAAT 1079
Query 1240 GGTAGCTTTGGATCTCACCCTGATGATAAATATGATGTGAATGCTCTCCCACTTGTGAGT 1299
|||||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||
Sbjct 1080 GGTAGCTTTGGATCTCACCCGGATGATAAATATGACGCAAATGCTCTCCCTCTTGTGAGT 1139
Query 1300 CACATCAGATTAAGCAACATTTCTGGAGAGAACATTGGCATTGCGGGGAAATTGTTTGGG 1359
||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct 1140 CACATAAGATTAAGCAACATTTCTGGAGAAAACATCGGCATTGCGGGGAAACTGTTTGGG 1199
Query 1360 ATCAAAGAATCTCCATTTAGCTCAGTGACTTTGTCGAATGTTTCTTTGTCGATGAGCTCA 1419
||||||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||
Sbjct 1200 ATCAAAGAATCTCCATTTAGCTCAGTGGCTTTGTGGAATATCTCTTTGTCGATGAGCTCA 1259
Query 1420 GGTTCTTCTGTTTCTTGGCAATGCTCCTACGTTTACGGGTCCTCGGAGTCAGTCATTCCT 1479
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1260 GGTTCTTCGGTTTCTTGGCAATGCTCCTACGTTTACGGGTCCTCAGAGTCAGTCATACCT 1319
Query 1480 GAACCGTGTCCCGAGCTGAAGAGAGATGCTGATGCTTACGGTAGAGCTGCAGTCTAGTGA 1539
||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||
Sbjct 1320 GAACCTTGTCCCGAGCTGAAAAGAGATGATGATGCTTACGGTAGAGCTGCAGTCTAATGA 1379
Query 1540 AACAGACTGCaaaagaaaaaagaaaaaaaaaGCAAGAAACATTTCTTGGGATTCTTTGAT 1599
||||||||||||| ||||||| |||||| | |||||||||||||||| ||
Sbjct 1380 TACAGACTGCAAAA-AAAAAAG----------CAAGAA-CTTTTCTTGGGATTCTTTCAT 1427
Query 1600 AGGATTCAATTCATCAATCATTTCATATTTTGTGGAGTTAGAGAAGGTCAGATTCTTTCC 1659
| |||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||
Sbjct 1428 AAGATTCAATTCATCAATCATT-CATATTTTGCGGAGTTAGAAAAGGTCAGATTCTTTCC 1486
Query 1660 TCAAGTAAACCACATTGTCTTTAGATCATACATGTTCCTTTCGGTTATTCTGGTTTCCTA 1719
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1487 TCAAGTAAACCACATTGTCTTTAGATCATACATGTTCCTTTTGGTTATTCTGGTTTATTA 1546
Query 1720 TTTTTATGTT-----GTTTGCATATTCTGAGATAAGAAATCTGTACAGGTTCATTTCTTC 1774
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1547 TTTTTATTTTATCTTGTTTGCATATTGTGAGATAAGAAATCTGTACAGGTTCATTTCTTC 1606
Query 1775 ATTCATGTGTAAACAAAGAAATTTTGTTTCAGCAGTTTTCCACAAGCC---ATTAAT-AA 1830
||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| ||
Sbjct 1607 ATTCATGTGTAAACAAAGAAATTTTGTTTGAGCAGTTTTCCACATGCCGTGATTAATTAA 1666
Query 1831 --TAAAAAGG-AGAGATAGTTTCATTTT 1855
|||||||| |||||||||||||||||
Sbjct 1667 AATAAAAAGGGAGAGATAGTTTCATTTT 1694
> Ahg494984 jgi|Araly1|494984|fgenesh2_kg.8__800__AT5G49215.2
Length=1675
Score = 91.6 bits (49), Expect = 2e-17
Identities = 68/77 (88%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 1726 TGTTGTTTGCATATTCTGAGA-TAAGAAATC-TGTACAGGTTCATTTCTTCATTCATGTG 1783
|||| |||||| || ||||| ||| | ||| ||||||||||||||||||||||||||||
Sbjct 1599 TGTTATTTGCAGCTTGTGAGATTAATATATCTTGTACAGGTTCATTTCTTCATTCATGTG 1658
Query 1784 TAAACAAAGAAATTTTG 1800
||| |||||||||||||
Sbjct 1659 TAACCAAAGAAATTTTG 1675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69667058105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5