BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G06778.1 Length=932 Score E Sequences producing significant alignments: (Bits) Value Ahg477995 jgi|Araly1|477995|fgenesh2_kg.3__696__AT3G06778.1 1282 0.0 Ahg497462 jgi|Araly1|497462|fgenesh2_kg.504__1__AT3G06778.1 1264 0.0 > Ahg477995 jgi|Araly1|477995|fgenesh2_kg.3__696__AT3G06778.1 Length=889 Score = 1282 bits (694), Expect = 0.0 Identities = 832/895 (93%), Gaps = 24/895 (3%) Strand=Plus/Plus Query 18 TCTCTCTCTTTCTGTTCTACTCACTCCTTCC--ATA--TTTTGTTTTGCCTTCACCTCCA 73 ||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| Sbjct 2 TCTCTCTCTTTCTGTTCTACTCACTCCTTCCATATATTTTTTTTTTTGCCTTCACCTCCA 61 Query 74 TTGTCCTGGAAACTTTTGTTGCGATGGGTAAGATCCGACCCGGACCGGATCCAAAAGCGG 133 || | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 TTTTTCTGGAAACTTTGGTTGCGATGGGTAAGATCCGACCCGGACCGGATCCAAAAGCGG 121 Query 134 CATTGGTCTCAGATATTTTAGCGCTATCGAGATCACCAATCTCTTGCATTCACATCAATC 193 |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 122 CATTGGTCTCAGATATTTTATCCCTATCGAGATCACCAATCTCTTGCATTCACATCAATT 181 Query 194 GCATCTCATCCGGTTCATGTTTCATCGACTGGTATCTCATTCTCGGTATTCAGGAAGATG 253 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 182 GCATCTCATCCGGTTCATGTTTCATCGACTGGTATCTCATTCTCGGTATCCAGGAAGATG 241 Query 254 CAGAGGTGAAGGTCATACGTAAACGATATCACAAATTAGCTTTGAAGGTTCATCCCGATA 313 ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |||| Sbjct 242 CAGAGGTCAAGGTCATACGTAAAAGATATCACAAATTAGCTTTGAAAGTTCATCCGGATA 301 Query 314 AAAACAATCACCCAAAAGCAGATATTGCTTTTAAGCTCATCCACGAGGCTTATTTATGTC 373 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 AAAACAATCACCCAAAGGCAGATATTGCTTTTAAGCTCATCCACGAGGCTTATTTATGTC 361 Query 374 TTTCCGACGAAACAAAGAGAAGAAGCTTCAACATAGACCGACGAAATAACATTTGTCTAA 433 |||| |||||||||| ||||| ||||||||||| ||| |||||||| ||||||||||||| Sbjct 362 TTTCAGACGAAACAAGGAGAATAAGCTTCAACACAGATCGACGAAAGAACATTTGTCTAA 421 Query 434 AATGCAGCCGAGTCTCACACAAATCCAAAGAAAACCGTAATGATTCTAAACCGAACCGGT 493 ||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||| Sbjct 422 AATGCAGCCGAGTCTCACACAAAACCAAAGAGAACCGTAACGATTCTAAACCAAACCGGT 481 Query 494 TCTGTCAAACCCTCAAGGACATTAGGGACAAGTTCAGAGAAGAGAACATGGTGATAGAGA 553 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 482 TCTGCCAAACCCTCAAGGACATTAGGGACAAGTTCAGAGAAGAGAACAAGGTGATAGAGA 541 Query 554 GATGTCTAAAAACCAATAGTGCATTCTTCATGGGGAACCGAACCAATGAAACCCCGCCGG 613 | ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | Sbjct 542 GGTGTCTAAAAACCAATAGTGCAATCTTCATGGGGAACCGAACCAAGGAAACCCCG--G- 598 Query 614 TTTATGGTATACCAAAGCAAAACCGGATTAAT-AAGGAGTCGCCTGTTTTTAATCCATCG 672 |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 599 TTTATGGTATACCAAACCAAAACCG-ATTAAAGAAGGAGTCGCCTGTTTTTAATCCATCG 657 Query 673 GATTATAGGTTATGGGGTTATCCACATGTGAGAAATCGGGTGTTCGACTACAACTTGTCG 732 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 GATTACAGGTTATGGGGTTATCCACATGTGAGAAATCGGGTGTTCGACTACAACTTGTCG 717 Query 733 TCCGATTGGAATATGTTCACGAGAAGCAGATCCACTTGTGTTCACTCATCGTGATGAttt 792 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TCGGATTGGAATATGTTCACGAGAAGCAGATCCACTTGTGTTCACTCATCGTGATGATTT 777 Query 793 agctttcggtttttaa-t-t--acctttttaatttactttttC-ATCCTAGTTTAAATAA 847 | |||||||||||||| | | || |||||| |||| |||||| || |||||||||||| Sbjct 778 ATCTTTCGGTTTTTAAATATTTAC-TTTTTA-TTTATTTTTTCCATT-TAGTTTAAATAA 834 Query 848 GTGAGAAAACATCAATTGAATTTTGT-------AGCTTCATTGTATTCTATCATT 895 ||||||||| ||| ||||| |||| | |||||||||||||||||||||| Sbjct 835 GTGAGAAAATATCTATTGATTTTTTTTTTTTTTAGCTTCATTGTATTCTATCATT 889 > Ahg497462 jgi|Araly1|497462|fgenesh2_kg.504__1__AT3G06778.1 Length=892 Score = 1264 bits (684), Expect = 0.0 Identities = 832/899 (93%), Gaps = 28/899 (3%) Strand=Plus/Plus Query 18 TCTCTCTCTTTCTGTTCTACTCACTCCTTCC--ATA---TTTTGTTTTGCCTTCACCTCC 72 ||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||| Sbjct 1 TCTCTCTCTTTCTGTTCTACTCACTCCTTCCATATATTTTTTTTTTTTGCCTTCACCTCC 60 Query 73 ATTGTCCTGGAAACTTTTGTTGCGATGGGTAAGATCCGACCCGGACCGGATCCAAAAGCG 132 ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATTTTTCTGGAAACTTTGGTTGCGATGGGTAAGATCCGACCCGGACCGGATCCAAAAGCG 120 Query 133 GCATTGGTCTCAGATATTTTAGCGCTATCGAGATCACCAATCTCTTGCATTCACATCAAT 192 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 121 GCATTGGTCTCAGATATTTTATCCCTATCGAGATCACCAATCTCTTGCATTCACATCAAT 180 Query 193 CGCATCTCATCCGGTTCAT---GTTTCATCGACTGGTATCTCATTCTCGGTATTCAGGAA 249 |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct 181 TGCATCTCATCCGGTTCATCATGTTTCATCGACTGGTATCTCATTCTCGGTATCCAGGAA 240 Query 250 GATGCAGAGGTGAAGGTCATACGTAAACGATATCACAAATTAGCTTTGAAGGTTCATCCC 309 ||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 241 GATGCAGAGGTCAAGGTCATACGTAAAAGATATCACAAATTAGCTTTGAAAGTTCATCCG 300 Query 310 GATAAAAACAATCACCCAAAAGCAGATATTGCTTTTAAGCTCATCCACGAGGCTTATTTA 369 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 301 GATAAAAACAATCACCCAAAGGCAGATATTGCTTTTAAGCTCATCCACGAGGCTTATTTA 360 Query 370 TGTCTTTCCGACGAAACAAAGAGAAGAAGCTTCAACATAGACCGACGAAATAACATTTGT 429 |||||||| |||||||||| ||||| ||||||||||| ||| |||||||| ||||||||| Sbjct 361 TGTCTTTCAGACGAAACAAGGAGAATAAGCTTCAACACAGATCGACGAAAGAACATTTGT 420 Query 430 CTAAAATGCAGCCGAGTCTCACACAAATCCAAAGAAAACCGTAATGATTCTAAACCGAAC 489 ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||| Sbjct 421 CTAAAATGCAGCCGAGTCTCACACAAAACCAAAGAGAACCGTAACGATTCTAAACCAAAC 480 Query 490 CGGTTCTGTCAAACCCTCAAGGACATTAGGGACAAGTTCAGAGAAGAGAACATGGTGATA 549 |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 481 CGGTTCTGCCAAACCCTCAAGGACATTAGGGACAAGTTCAGAGAAGAGAACAAGGTGATA 540 Query 550 GAGAGATGTCTAAAAACCAATAGTGCATTCTTCATGGGGAACCGAACCAATGAAACCCCG 609 ||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 541 GAGAGGTGTCTAAAAACCAATAGTGCAATCTTCATGGGGAACCGAACCAAGGAAACCCCG 600 Query 610 CCGGTTTATGGTATACCAAAGCAAAACCGGATTAAT-AAGGAGTCGCCTGTTTTTAATCC 668 | |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| Sbjct 601 --G-TTTATGGTATACCAAACCAAAACCG-ATTAAAGAAGGAGTCGCCTGTTTTTAATCC 656 Query 669 ATCGGATTATAGGTTATGGGGTTATCCACATGTGAGAAATCGGGTGTTCGACTACAACTT 728 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 ATCGGATTACAGGTTATGGGGTTATCCACATGTGAGAAATCGGGTGTTCGACTACAACTT 716 Query 729 GTCGTCCGATTGGAATATGTTCACGAGAAGCAGATCCACTTGTGTTCACTCATCGTGATG 788 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 GTCGTCGGATTGGAATATGTTCACGAGAAGCAGATCCACTTGTGTTCACTCATCGTGATG 776 Query 789 Atttagctttcggtttttaa-t-t--acctttttaatttactttttC-ATCCTAGTTTAA 843 ||||| |||||||||||||| | | || |||||| |||| |||||| || |||||||| Sbjct 777 ATTTATCTTTCGGTTTTTAAATATTTAC-TTTTTA-TTTATTTTTTCCATT-TAGTTTAA 833 Query 844 ATAAGTGAGAAAACATCAATTGAATTTTGT-------AGCTTCATTGTATTCTATCATT 895 ||||||||||||| ||| ||||| |||| | |||||||||||||||||||||| Sbjct 834 ATAAGTGAGAAAATATCTATTGATTTTTTTTTTTTTTAGCTTCATTGTATTCTATCATT 892 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34577485719 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5