BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06778.1
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477995 jgi|Araly1|477995|fgenesh2_kg.3__696__AT3G06778.1 1282 0.0
Ahg497462 jgi|Araly1|497462|fgenesh2_kg.504__1__AT3G06778.1 1264 0.0
> Ahg477995 jgi|Araly1|477995|fgenesh2_kg.3__696__AT3G06778.1
Length=889
Score = 1282 bits (694), Expect = 0.0
Identities = 832/895 (93%), Gaps = 24/895 (3%)
Strand=Plus/Plus
Query 18 TCTCTCTCTTTCTGTTCTACTCACTCCTTCC--ATA--TTTTGTTTTGCCTTCACCTCCA 73
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct 2 TCTCTCTCTTTCTGTTCTACTCACTCCTTCCATATATTTTTTTTTTTGCCTTCACCTCCA 61
Query 74 TTGTCCTGGAAACTTTTGTTGCGATGGGTAAGATCCGACCCGGACCGGATCCAAAAGCGG 133
|| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TTTTTCTGGAAACTTTGGTTGCGATGGGTAAGATCCGACCCGGACCGGATCCAAAAGCGG 121
Query 134 CATTGGTCTCAGATATTTTAGCGCTATCGAGATCACCAATCTCTTGCATTCACATCAATC 193
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 122 CATTGGTCTCAGATATTTTATCCCTATCGAGATCACCAATCTCTTGCATTCACATCAATT 181
Query 194 GCATCTCATCCGGTTCATGTTTCATCGACTGGTATCTCATTCTCGGTATTCAGGAAGATG 253
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 182 GCATCTCATCCGGTTCATGTTTCATCGACTGGTATCTCATTCTCGGTATCCAGGAAGATG 241
Query 254 CAGAGGTGAAGGTCATACGTAAACGATATCACAAATTAGCTTTGAAGGTTCATCCCGATA 313
||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| ||||
Sbjct 242 CAGAGGTCAAGGTCATACGTAAAAGATATCACAAATTAGCTTTGAAAGTTCATCCGGATA 301
Query 314 AAAACAATCACCCAAAAGCAGATATTGCTTTTAAGCTCATCCACGAGGCTTATTTATGTC 373
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AAAACAATCACCCAAAGGCAGATATTGCTTTTAAGCTCATCCACGAGGCTTATTTATGTC 361
Query 374 TTTCCGACGAAACAAAGAGAAGAAGCTTCAACATAGACCGACGAAATAACATTTGTCTAA 433
|||| |||||||||| ||||| ||||||||||| ||| |||||||| |||||||||||||
Sbjct 362 TTTCAGACGAAACAAGGAGAATAAGCTTCAACACAGATCGACGAAAGAACATTTGTCTAA 421
Query 434 AATGCAGCCGAGTCTCACACAAATCCAAAGAAAACCGTAATGATTCTAAACCGAACCGGT 493
||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||
Sbjct 422 AATGCAGCCGAGTCTCACACAAAACCAAAGAGAACCGTAACGATTCTAAACCAAACCGGT 481
Query 494 TCTGTCAAACCCTCAAGGACATTAGGGACAAGTTCAGAGAAGAGAACATGGTGATAGAGA 553
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 482 TCTGCCAAACCCTCAAGGACATTAGGGACAAGTTCAGAGAAGAGAACAAGGTGATAGAGA 541
Query 554 GATGTCTAAAAACCAATAGTGCATTCTTCATGGGGAACCGAACCAATGAAACCCCGCCGG 613
| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
Sbjct 542 GGTGTCTAAAAACCAATAGTGCAATCTTCATGGGGAACCGAACCAAGGAAACCCCG--G- 598
Query 614 TTTATGGTATACCAAAGCAAAACCGGATTAAT-AAGGAGTCGCCTGTTTTTAATCCATCG 672
|||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 599 TTTATGGTATACCAAACCAAAACCG-ATTAAAGAAGGAGTCGCCTGTTTTTAATCCATCG 657
Query 673 GATTATAGGTTATGGGGTTATCCACATGTGAGAAATCGGGTGTTCGACTACAACTTGTCG 732
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GATTACAGGTTATGGGGTTATCCACATGTGAGAAATCGGGTGTTCGACTACAACTTGTCG 717
Query 733 TCCGATTGGAATATGTTCACGAGAAGCAGATCCACTTGTGTTCACTCATCGTGATGAttt 792
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCGGATTGGAATATGTTCACGAGAAGCAGATCCACTTGTGTTCACTCATCGTGATGATTT 777
Query 793 agctttcggtttttaa-t-t--acctttttaatttactttttC-ATCCTAGTTTAAATAA 847
| |||||||||||||| | | || |||||| |||| |||||| || ||||||||||||
Sbjct 778 ATCTTTCGGTTTTTAAATATTTAC-TTTTTA-TTTATTTTTTCCATT-TAGTTTAAATAA 834
Query 848 GTGAGAAAACATCAATTGAATTTTGT-------AGCTTCATTGTATTCTATCATT 895
||||||||| ||| ||||| |||| | ||||||||||||||||||||||
Sbjct 835 GTGAGAAAATATCTATTGATTTTTTTTTTTTTTAGCTTCATTGTATTCTATCATT 889
> Ahg497462 jgi|Araly1|497462|fgenesh2_kg.504__1__AT3G06778.1
Length=892
Score = 1264 bits (684), Expect = 0.0
Identities = 832/899 (93%), Gaps = 28/899 (3%)
Strand=Plus/Plus
Query 18 TCTCTCTCTTTCTGTTCTACTCACTCCTTCC--ATA---TTTTGTTTTGCCTTCACCTCC 72
||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct 1 TCTCTCTCTTTCTGTTCTACTCACTCCTTCCATATATTTTTTTTTTTTGCCTTCACCTCC 60
Query 73 ATTGTCCTGGAAACTTTTGTTGCGATGGGTAAGATCCGACCCGGACCGGATCCAAAAGCG 132
||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTTTTCTGGAAACTTTGGTTGCGATGGGTAAGATCCGACCCGGACCGGATCCAAAAGCG 120
Query 133 GCATTGGTCTCAGATATTTTAGCGCTATCGAGATCACCAATCTCTTGCATTCACATCAAT 192
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 121 GCATTGGTCTCAGATATTTTATCCCTATCGAGATCACCAATCTCTTGCATTCACATCAAT 180
Query 193 CGCATCTCATCCGGTTCAT---GTTTCATCGACTGGTATCTCATTCTCGGTATTCAGGAA 249
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TGCATCTCATCCGGTTCATCATGTTTCATCGACTGGTATCTCATTCTCGGTATCCAGGAA 240
Query 250 GATGCAGAGGTGAAGGTCATACGTAAACGATATCACAAATTAGCTTTGAAGGTTCATCCC 309
||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 241 GATGCAGAGGTCAAGGTCATACGTAAAAGATATCACAAATTAGCTTTGAAAGTTCATCCG 300
Query 310 GATAAAAACAATCACCCAAAAGCAGATATTGCTTTTAAGCTCATCCACGAGGCTTATTTA 369
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATAAAAACAATCACCCAAAGGCAGATATTGCTTTTAAGCTCATCCACGAGGCTTATTTA 360
Query 370 TGTCTTTCCGACGAAACAAAGAGAAGAAGCTTCAACATAGACCGACGAAATAACATTTGT 429
|||||||| |||||||||| ||||| ||||||||||| ||| |||||||| |||||||||
Sbjct 361 TGTCTTTCAGACGAAACAAGGAGAATAAGCTTCAACACAGATCGACGAAAGAACATTTGT 420
Query 430 CTAAAATGCAGCCGAGTCTCACACAAATCCAAAGAAAACCGTAATGATTCTAAACCGAAC 489
||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |||
Sbjct 421 CTAAAATGCAGCCGAGTCTCACACAAAACCAAAGAGAACCGTAACGATTCTAAACCAAAC 480
Query 490 CGGTTCTGTCAAACCCTCAAGGACATTAGGGACAAGTTCAGAGAAGAGAACATGGTGATA 549
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 CGGTTCTGCCAAACCCTCAAGGACATTAGGGACAAGTTCAGAGAAGAGAACAAGGTGATA 540
Query 550 GAGAGATGTCTAAAAACCAATAGTGCATTCTTCATGGGGAACCGAACCAATGAAACCCCG 609
||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 541 GAGAGGTGTCTAAAAACCAATAGTGCAATCTTCATGGGGAACCGAACCAAGGAAACCCCG 600
Query 610 CCGGTTTATGGTATACCAAAGCAAAACCGGATTAAT-AAGGAGTCGCCTGTTTTTAATCC 668
| |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 601 --G-TTTATGGTATACCAAACCAAAACCG-ATTAAAGAAGGAGTCGCCTGTTTTTAATCC 656
Query 669 ATCGGATTATAGGTTATGGGGTTATCCACATGTGAGAAATCGGGTGTTCGACTACAACTT 728
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATCGGATTACAGGTTATGGGGTTATCCACATGTGAGAAATCGGGTGTTCGACTACAACTT 716
Query 729 GTCGTCCGATTGGAATATGTTCACGAGAAGCAGATCCACTTGTGTTCACTCATCGTGATG 788
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GTCGTCGGATTGGAATATGTTCACGAGAAGCAGATCCACTTGTGTTCACTCATCGTGATG 776
Query 789 Atttagctttcggtttttaa-t-t--acctttttaatttactttttC-ATCCTAGTTTAA 843
||||| |||||||||||||| | | || |||||| |||| |||||| || ||||||||
Sbjct 777 ATTTATCTTTCGGTTTTTAAATATTTAC-TTTTTA-TTTATTTTTTCCATT-TAGTTTAA 833
Query 844 ATAAGTGAGAAAACATCAATTGAATTTTGT-------AGCTTCATTGTATTCTATCATT 895
||||||||||||| ||| ||||| |||| | ||||||||||||||||||||||
Sbjct 834 ATAAGTGAGAAAATATCTATTGATTTTTTTTTTTTTTAGCTTCATTGTATTCTATCATT 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34577485719
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5