BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06780.1
Length=1034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928336 jgi|Araly1|928336|scaffold_300793.1 1031 0.0
> Ahg928336 jgi|Araly1|928336|scaffold_300793.1
Length=652
Score = 1031 bits (558), Expect = 0.0
Identities = 621/651 (95%), Gaps = 5/651 (1%)
Strand=Plus/Plus
Query 127 CGTCGGATTTGTAGATCATCATGGAGTTCTCTTTGATCGCAGATACAGTCACAGTTTGCA 186
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2 CGTCGGATTTGTAGATCATCATGGAGTTCTCTTTGATCGCCGACACAGTCACAGTTTGCA 61
Query 187 CGGCTAAGCAAGGTATCGCGTTTGGGAAATCTCTTCTTCAAAGGTTGGATTTGGCCAATC 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CGGCTAAGCAAGGTATCGCGTTTGGGAAATCTCTTCTTCAAAGGTTGGATTTGGCCAATC 121
Query 247 ACATTTCTTTCGCCGATTCCGTTGTTGATCATCAATCTCCCGGTGGAGGAATCGTTCAAG 306
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 122 ACATTTCTTTCGCCGATTCTGTTGTTGATCATCAATCTCCCGGTGGAGGAATCGTTCAAG 181
Query 307 CATCGGCGATTAT-TTTCCCCGTCGATGCAATTGCTCCTCCACCGGTCAGATCTAGCTCT 365
||||||||||||| |||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 182 CATCGGCGATTATCTTTCCC-GTTGATGCAATTGCTCCTCCACCTGTCAGATCTAGCTCT 240
Query 366 TATAAGACAATTCGCCGGATCCGTAAAAAGCGACGAACCAGGCGAGTTTCGTTTGGTGGA 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 TATAAGACAATTCGCCGGATCCGTAAAAAGCGACGAACCAGGCGAGTTTCGTTTGGCGGT 300
Query 426 GATGGAGATGACGCAGGAGATTTTGGTCGTTTTCTGTTAGAAGGTGATTTCGGTGGTAGC 485
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 GATGGAGACGACGGAGGAGATTTTGGTCGTTTTCTGTTAGAAGGTGATTTCGGTGGTAAC 360
Query 486 GACGGTCCATTTGGATTTGGAGGCGGAGGAAACGATGGAGGCGGAAAGGGATGGAACTAC 545
||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 361 GACGGTCCATTCGGATTTGGAGGCGGAGGAAACGACGGAGGTGGAAAGGGATGGAACTAC 420
Query 546 GGCGGCGGCGGCGGTGGT--TT-CGGGAGGGATAATTGGGATGGGTCTTCGTTTTCGTCT 602
||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 421 GGCGGCGGCGGTGGTGGTGGTTTCGGGAGGGATAATTGGGATGGGTCTTCGTTTTCGTCG 480
Query 603 TGGTCAGATCCAGCGATGGAATTTGTGTATGAAGTGATTTGCTGGATCGCGTTGTCTAAT 662
|||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 481 TGGTCAGATCCAGCAATGGAATTCGTGTACGAAGTGATCTGCTGGATCGCGTTGTCTAAT 540
Query 663 TGTGTGCACTTTGCGTTCAAGAGGATAGTGAGGATCGTGACCGACGGTGAAAGGGAGAAG 722
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 TGTGTGCACTTTGCGTTCAAGAGGATAGTGAGGATCGTGACCGCCGGTGAAAGGGAGAAG 600
Query 723 TTGAACATTGCATTATCTCCGGTATGCTGACAAATTCGTGGTCGTGGTGAT 773
||| ||||| ||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 601 TTGGACATTACATTATCTCCGGTGTGCTGACAAATTCGTTGTCGTAGTGAT 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38466023253
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5