BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06790.1
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477997 jgi|Araly1|477997|fgenesh2_kg.3__698__AT3G06790.2 1155 0.0
> Ahg477997 jgi|Araly1|477997|fgenesh2_kg.3__698__AT3G06790.2
Length=892
Score = 1155 bits (625), Expect = 0.0
Identities = 735/786 (94%), Gaps = 16/786 (2%)
Strand=Plus/Plus
Query 1 GAAGAAGAACAGAAGCCGAAACCCTCACCGGCGATGGCTCTTATCAGCACACGGCGAACA 60
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1 GAAGAAGAACAGAAGCCGAAACCCTCACCGGCGATGGCTCTTATCAACGCACGGCGAACA 60
Query 61 TTATCGACACTCCTAAACAAAACCCTCTCTTCCTCTACTTCATATTCTTCTTCATTTCCT 120
|| ||||||| |||| ||||| ||||||||||||| |||||| ||||||||||||| ||
Sbjct 61 GTAGCGACACTTCTAAGCAAAAGCCTCTCTTCCTCTTCTTCATCTTCTTCTTCATTTTCT 120
Query 121 ACGCTCTCTTCTCGTTCTCGATTCGCCATGCCTCTAATTGAAAAGGTTTCCTCTTCCCGA 180
||||||||||||||||||||||||||| |||||||||||||||||| | || |||
Sbjct 121 ACGCTCTCTTCTCGTTCTCGATTCGCCGTGCCTCTAATTGAAAAGG-----T-TT-CCG- 172
Query 181 ACCAGCCTGGGCCCGTGTTACATCTCGACCCGACCCAAGACATCCGGGTCCGGATACTCG 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 ----GACTGGGCCCGTGTTACATCTCGACCCGACCCAAGACATCCGGGTCCGGATACTCG 228
Query 241 CCGCTGAATGATCCTTCGCCGAATTGGAGCAACCGTCCGCCGAAGGAGACGATTCTTCTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 CCGCTGAATGATCCTTCGCCGAATTGGAGCAACCGTCCGCCGAAGGAGACGATTCTTCTT 288
Query 301 GATGGGTGCGATTATGAGCACTGGCTCATCGTCATGGAGTTCACTGATCCTAAACCTACT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 289 GATGGGTGCGATTATGAGCACTGGCTCATCGTCATGGAGTTCACTGATCCTAAACCCACT 348
Query 361 GAAGAAGAGATGATCAATTCTTATGTCAAAACCTTAACTTCCGTCCTTGGCTG-GCAAGA 419
||||||||||||||||||||||||||||||||||||||||| ||||||||| | | | ||
Sbjct 349 GAAGAAGAGATGATCAATTCTTATGTCAAAACCTTAACTTCTGTCCTTGGCAGTG-AGGA 407
Query 420 AGAGGCCAAGAAGAAGATTTACTCTGTTTGTACTTCGACCTACACTGGCTTTGGTGCTTT 479
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 408 AGAGGCCAAGAAGAAGATTTACTCGGTTAGTACTTCGACCTACACTGGCTTTGGTGCATT 467
Query 480 GATCTCTGAAGAGCTCTCTTGCAAAGTCAAAGCATTGCCTGGTGTTCTCTGGGTGCTGCC 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GATCTCTGAAGAGCTTTCTTGCAAAGTCAAAGCATTGCCTGGTGTTCTCTGGGTGCTGCC 527
Query 540 GGATTCCTATCTCGATGTACCAAACAAAGACTACGGAGGTGACTTGTACGTTGAAGGAAA 599
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
Sbjct 528 GGATTCCTATCTCGATGTACCAAACAAAGACTATGGAGGTGACTTGTACATTGAAGGAGA 587
Query 600 GGTCATACCCAGACCACAGTACAGGTTCACGGAACAGCGTCATACTAG-ACCCCGTCCTA 658
|||||||||||||||||||||||||||||||||||||||||| ||||| | || || |||
Sbjct 588 GGTCATACCCAGACCACAGTACAGGTTCACGGAACAGCGTCAGACTAGGAACC-GTTCTA 646
Query 659 GGCCAAGGTATGATAGGCGCCGTGAGACAATGCAGGTTGAGAGGAGAGAGCCATCCATGG 718
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct 647 GGCCAAGGTATGATAGGCGACGTTAGACAATGCAGGTCGAGAGGAGAGAGCCATCCATGG 706
Query 719 GTCTTCATTCTCCAGTAAATCCGGGAGAGTTCAACAAGCCCAGTGCTTAATATTAAACAT 778
||| ||| |||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 707 GTCATCAAGCTCCAGCATATCCGGGAGAGTTCAACAAGCCCAGTGCTTAATATAAAACAT 766
Query 779 GAACAA 784
||||||
Sbjct 767 GAACAA 772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35187452391
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5