BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06820.2
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477234 jgi|Araly1|477234|fgenesh2_kg.2__2364__AT1G80210.2 1613 0.0
Ahg478001 jgi|Araly1|478001|fgenesh2_kg.3__702__AT3G06820.2 1081 0.0
> Ahg477234 jgi|Araly1|477234|fgenesh2_kg.2__2364__AT1G80210.2
Length=1831
Score = 1613 bits (873), Expect = 0.0
Identities = 1047/1128 (93%), Gaps = 24/1128 (2%)
Strand=Plus/Plus
Query 156 ATCTCTTCGGAAGAAGTAATAATGTCTCTGACATGCGTAAATATGTCGGAGGATGTCTGG 215
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 30 ATCTCTTCCGAAGAAGTAATAATGTCTCTGACATGCGTTAATATGTCCGAGGATGTCTGG 89
Query 216 TTGACTTGCCTCACTCACGCATTATCCACCGAGACCGAAGAAATCATGGGTCTCCTTCTC 275
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 90 TTGACTTGCCTCACTCACGCATTATCCACCGAGACCGAAGAGATCATGGGTCTCCTTCTC 149
Query 276 GGCGACATCGA-GTACTCAAAGAACGGCGAAAGTGCCACAGCTATGATCTGGGGAGCATC 334
||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 150 GGCGACATCGAGGCACTCAAAGAACGGCG-AAGTGCCACAGCTATGATCTGGGGAGCATC 208
Query 335 GCCTCAGCCACGATCTGATCGGCAGAAGGATCGAGTTGAAACCAATCCTGAACAATTGGC 394
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 GCCTCAGTCACGGTCTGATCGGCAGAAGGATCGAGTTGAAACCAATCCTGAACAATTGGC 268
Query 395 TGCTGCTTCTGCTCAGGCTGATAGAATGACGATATCAACGGGCAGAACTACACGGGTCAT 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 269 TGCTGCTTCTGCTCAGGCTGATAGAATGACGATATCAACGGGCAGAACTACACGGGTGAT 328
Query 455 TGGATGGTACCACTCCCATCCTCATATTACCGTTCTTCCTTCCCATGTCGATGTTCGGAC 514
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 329 TGGATGGTACCACTCCCATCCTCATATTACCGTTCTTCCTTCCCATGTTGATGTTCGGAC 388
Query 515 ACAAGCTATGTATCAGCTTTTAGATTCTGGTTTTATTGGCCTCATATTTTCCTGTTTTAG 574
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 389 ACAAGCTATGTATCAGCTTTTAGATTCTGGTTTTATTGGCCTCATAGTCTCCTGTTTTAG 448
Query 575 TGAAGATGCTAACAAGGTTGGTAGAATCCAAGTTATCGCTTTCCAGTCTTCTGATGGAAA 634
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 449 TGAAGATGCTAACAAGGTTGGTAGAATCCAAGTTATTGCTTTCCAGTCTTCTGATGGAAA 508
Query 635 GCCGAATAGTATTCCTAAATCAATGAGCCTGGTTCTTGCTAATAAAGATTCTGTCATCGA 694
||||||||||||||||||| || | |||||||| ||||| |||||||| |||||||||||
Sbjct 509 GCCGAATAGTATTCCTAAACCAGTCAGCCTGGTACTTGCAAATAAAGACTCTGTCATCGA 568
Query 695 TATAGAATCTTCATCTAGTTCTTCGGACTCGATATACCAGCGATCCTCTTCTTCTA---- 750
| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct 569 TTTAGAATCGTCATTTAGTTCTTCGGACTCGATATACCAGAGATCCTCTTCTGCTCGGGG 628
Query 751 AG-C-C-C--GAGCTAGACACAATTGATACTGCTACAACTTCCGGATCTAAGGGTGGAGG 805
|| | | | ||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 629 AGACACTCCCGAGCTAGACACAAGTGATACAGCTACAACTTCCGGATCTAAGGGTGGAGG 688
Query 806 ACGGGTTTCAGATTTTGGGCCTTTCTTTA-CAAACAATATTGAGGCCAATATCACCGGCA 864
||||||||||||||||||| |||||||| ||| ||||| ||||||||| | |||||| |
Sbjct 689 ACGGGTTTCAGATTTTGGGGCTTTCTTTGTCAA-CAATACTGAGGCCAACAGCACCGG-A 746
Query 865 G-AGATGAAACTCACAAATCAGGCAATCTCAGCAGCACAACTATAGGAATTGACTCGATG 923
| ||||| ||| | | | || || || | ||||||| |||| | |||||||||||||
Sbjct 747 GGAGATGGAAC--A-AG-T--GGAAA-CT-A-CAGCACAGCTATCGAAATTGACTCGATG 797
Query 924 GACATGTCTGAAAGTATGCAAGAGGCAATGCTCCGTTCAAATTTAGATACCAGTGGTGCG 983
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
Sbjct 798 GACATGTCTGAAAGTATGCAAGAGGCGATGCTCCGTTCAAATTTAGAAACCAGTGGTGTG 857
Query 984 GGGTATGTTAGAAAAGAAGTCCCACTTCATGTTTTGCCAACTTCATCCCTTCTTCCAGTC 1043
| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
Sbjct 858 GAGTATGTTAGAAAAGAAGTCCCACTTCATGTTTTGCCGACTTCATCCCTTCTTCAACTG 917
Query 1044 AATTCACCTTTAGCATCTTTTAAAAGCCTGCAACGAGTACTGTACGAGGAGGAACGAGCA 1103
|||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||
Sbjct 918 AATTCACCTTTAGCATCTTTTAGAAGCCTGCAACGAGTACTCTATGAGGAAGAACGAGCA 977
Query 1104 GCGTACTACCAATCAGTGCAGCAAAACATGAGAGATGGGCGAGTTCATCCTCTTGCTTTC 1163
|||||| ||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||
Sbjct 978 GCGTACCACCAATCCGTGCAGCAAAGCATGAGAGACGGGAGAGTTCATCCTCTTGCTTTC 1037
Query 1164 ATTCACAACACATCAACATATCAAGCCTCCATGTGCAAGTTGATCGAATACTGCTTGAGT 1223
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1038 ATTCACAACACATCAACATATCAGGCTTCCATGTGCAAGTTGATCGAATACTGCTTGAGT 1097
Query 1224 CCTGCCATTAACGCACTTCAAGATAGGCAGAAGGAGAACAAGATCCGG 1271
|||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1098 CCTGCCATTAACGCACTTCAAGATAGGCTGAAGGAGAACAAGATCCGG 1145
Score = 274 bits (148), Expect = 1e-72
Identities = 185/203 (91%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 1271 GTTAGCAATGCTGATGGATGAAGCTGAGGTTTTGGAGGCACAAAAACTTAAAGGAGCAGA 1330
|||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1177 GTTAGCAATGCTGATGCATGAAGCTGAGGTTTTGGAAGCACAGAAACTTAAAGGAGCAGA 1236
Query 1331 GACAAGCCGGAGACCATCTCATCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGAGGATC 1390
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GACAAGCGGGGGACCATCTCGTCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGAGGATC 1296
Query 1391 GTAGAAAGACCTGCAACTAAAGACACATGCCCGTCTTCTTTGTGTATATTTCTATTTGGA 1450
||||||||| ||| ||||||| | |||||| || ||||||||||| |||||||||||
Sbjct 1297 GTAGAAAGATGTGCGACTAAAGGCGCATGCCT-TCCTCTTTGTGTATGTTTCTATTTGGG 1355
Query 1451 CATTTGTTTTCTTACAT-TGTAT 1472
|||||||||||||||| |||||
Sbjct 1356 CATTTGTTTTCTTACAACTGTAT 1378
> Ahg478001 jgi|Araly1|478001|fgenesh2_kg.3__702__AT3G06820.2
Length=1605
Score = 1081 bits (585), Expect = 0.0
Identities = 716/777 (92%), Gaps = 18/777 (2%)
Strand=Plus/Plus
Query 797 GGGTGGAGGACGGGTTTCAGATTTTGGGCCTTTCTTTACAAACAATATTGAGGCCAATAT 856
|||||||||||||||||||||||||||| |||||||| |||||| ||||||||| ||
Sbjct 834 GGGTGGAGGACGGGTTTCAGATTTTGGGGCTTTCTTTGTTAACAATGCTGAGGCCAACAT 893
Query 857 CACCGGCAGAGAT-GAA--ACT-CACA--A-A--TCAGGCAATCTCAGCAGCACAACTAT 907
||||||||||||| ||| | | | | | | ||||||||||||||||||||| ||||
Sbjct 894 CACCGGCAGAGATGGAACTAGTGGAAATTACAGCTCAGGCAATCTCAGCAGCACAGCTAT 953
Query 908 AGGAATTGACTCGATGGACATGTCTGAAAGTATGCAAGAGGCAATGCTCCGTTCAAATTT 967
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AGAAATTGACTCCATGGACATGTCTGAAAGTATGCAAGAGGCAATGCTCCGTTCAAATTT 1013
Query 968 AGATACCAGTGGTGCGGGGTATGTTAGAAAAGAAGTCCCACTTCATGTTTTGCCAACTTC 1027
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AGAAACCAGTGGTGTGGGGTATGTTAGAAAAGAAGTCCCACTTCATGTTTTGCCAACTTC 1073
Query 1028 ATCCCTTCTTCCAGTCAATTCACCTTTAGCATCTTTTAAAAGCCTGCAACGAGTACTGTA 1087
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1074 ATCCCTTCTTCAACTCAATTCACCTTTAGCATCTTTTAAAAGCCTGCAACGAGTACTCTA 1133
Query 1088 CGAGGAGGAACGAGCAGCGTACTACCAATCAGTGCAGCAAAACATGAGAGATGGGCGAGT 1147
|||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||
Sbjct 1134 CGAGGAGGAACGAGCAGCGTACCACCAATCGGTGCAGCAAATCATGAGAGACGGGCGAGT 1193
Query 1148 TCATCCTCTTGCTTTCATTCACAACACATCAACATATCAAGCCTCCATGTGCAAGTTGAT 1207
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1194 TCATCCTCTTGCTTTCATTCACAACACATCAACATATCAAGCTTCCATGTGCAAGTTAAT 1253
Query 1208 CGAATACTGCTTGAGTCCTGCCATTAACGCACTTCAAGATAGGCAGAAGGAGAACAAGAT 1267
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1254 CGAATACTGCTTGAGTCCTGCCATTAACGCACTTCAAGATAGGCTGAAGGAGAACAAGAT 1313
Query 1268 CCGGTTAGCAATGCTGATGGATGAAGCTGAGGTTTTGGAGGCACAAAAACTTAAAGGAGC 1327
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1314 CCGGTTAGCAATGCTGATGGATGAAGCTGAGGTTTTGGAAGCACAGAAACTTAAAGGAGC 1373
Query 1328 AGAGACAAGCCGGAGACCATCTCATCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGAGG 1387
|||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1374 AGAGACAAGCGGGGGGCCATCTCGTCTGGTTCACGGTTCTGGCAGCCGAAGCAGAAGAGG 1433
Query 1388 ATCGTAGAAAGACCTGCAACTAAA-GACACATGCCCGTCTTCTTTGTGTATATTTCTATT 1446
| |||||||||| |||| |||||| | |||| | ||| ||||||||||| ||||||||
Sbjct 1434 ACCGTAGAAAGATCTGCGACTAAAAGTCACA--C--GTCCTCTTTGTGTATGTTTCTATT 1489
Query 1447 TGGACATTTGTTTTCTTACA-TTGTATTATTTTGACCAGACTCCATCGCTTTGTTGTTGT 1505
|||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||
Sbjct 1490 TGGACATTTGTTTTCTTACAATTGTATCATTTTGACCAAACTCCATCGCTTTGTTGTTGT 1549
Query 1506 TTAGAATCTGATCCACTTTTGGAAGAACCA-AA-AAAGAAGAATGAGAAGAACATTA 1560
||||| ||||||| | |||||||||||||| || ||| |||||||||||||| ||||
Sbjct 1550 TTAGATTCTGATCAAGTTTTGGAAGAACCAGAAGAAA-AAGAATGAGAAGAAAATTA 1605
Score = 568 bits (307), Expect = 6e-161
Identities = 321/328 (98%), Gaps = 0/328 (0%)
Strand=Plus/Plus
Query 419 AATGACGATATCAACGGGCAGAACTACACGGGTCATTGGATGGTACCACTCCCATCCTCA 478
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 384 AATGACGATATCAACGGGCAGAACTACACGGGTGATTGGATGGTACCACTCCCATCCCCA 443
Query 479 TATTACCGTTCTTCCTTCCCATGTCGATGTTCGGACACAAGCTATGTATCAGCTTTTAGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TATTACCGTTCTTCCTTCCCATGTCGATGTTCGGACACAAGCTATGTATCAGCTTTTAGA 503
Query 539 TTCTGGTTTTATTGGCCTCATATTTTCCTGTTTTAGTGAAGATGCTAACAAGGTTGGTAG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 TTCTGGTTTTATTGGCCTCATATTTTCCTGTTTTAGTGAAGATGCTAACAAGGTTGGTAG 563
Query 599 AATCCAAGTTATCGCTTTCCAGTCTTCTGATGGAAAGCCGAATAGTATTCCTAAATCAAT 658
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 564 AATCCAAGTTATCGCTTTCCAGTCTTCTGATGGAAACCCGAATAGTATTCCTAAATCAAT 623
Query 659 GAGCCTGGTTCTTGCTAATAAAGATTCTGTCATCGATATAGAATCTTCATCTAGTTCTTC 718
||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||
Sbjct 624 GAGCCTGGTTCTTGCTAATAAAGATTCTGTCATCGATTTAGAATCGTCATTTAGTTCTTC 683
Query 719 GGACTCGATATACCAGCGATCCTCTTCT 746
|||||||||||||||| |||||||||||
Sbjct 684 GGACTCGATATACCAGAGATCCTCTTCT 711
Score = 470 bits (254), Expect = 2e-131
Identities = 336/372 (90%), Gaps = 20/372 (5%)
Strand=Plus/Plus
Query 14 GCGCCATCGGAACTGTGCTAAATTACACGTTCCGACACATAATTAATGTAGGATTCTTTC 73
||||||| |||||| |||||||||||| ||| | |||||| ||||||||| ||||| |||
Sbjct 1 GCGCCATGGGAACTCTGCTAAATTACAAGTT-CAACACATTATTAATGTACGATTCGTTC 59
Query 74 TTCTGCTTTCCTCAGTTTCGTCCG-------AAAGAGGCAAAATTCAAATCGAATTCTCG 126
| ||||||||| |||||||||||| |||||||||||| ||||||||||||||||
Sbjct 60 TACTGCTTTCCCCAGTTTCGTCCGTTAAACTAAAGAGGCAAAA-TCAAATCGAATTCTCG 118
Query 127 AAGAAGC---T-----CATCTGCAT-TA-AGTTTGAAAGATCTCTTCGGAAGAAGTAATA 176
|||| || | ||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 119 AAGACGCAAATAACAACATCTGCATACAGAGTTT-AAAGATCTCTTCGGAAGAAGTAATA 177
Query 177 ATGTCTCTGACATGCGTAAATATGTCGGAGGATGTCTGGTTGACTTGCCTCACTCACGCA 236
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 178 ATGTCTCTGACATGCGTAAATATGTCCGAGGATGTGTGGTTGACTTGCCTCACTCACGCA 237
Query 237 TTATCCACCGAGACCGAAGAAATCATGGGTCTCCTTCTCGGCGACATCGAGTACTCAAAG 296
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTATCCACCGAGACCGAAGAGATCATGGGTCTCCTTCTCGGCGACATCGAGTACTCAAAG 297
Query 297 AACGGCGAAAGTGCCACAGCTATGATCTGGGGAGCATCGCCTCAGCCACGATCTGATCGG 356
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 298 AACGGCGAAAGTGCCACAGCTATGATCTGGGCAGCATCGCCTCAGTCACGATCTGATCGG 357
Query 357 CAGAAGGATCGA 368
||||||||||||
Sbjct 358 CAGAAGGATCGA 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58963699260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5