BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06830.1
Length=2122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478002 jgi|Araly1|478002|fgenesh2_kg.3__703__AT3G06830.1 3125 0.0
> Ahg478002 jgi|Araly1|478002|fgenesh2_kg.3__703__AT3G06830.1
Length=2060
Score = 3125 bits (1692), Expect = 0.0
Identities = 1955/2077 (94%), Gaps = 37/2077 (2%)
Strand=Plus/Plus
Query 1 GACAGAAAATGTAACATAGCCTCATGTTCTTTCCTAAAACCCCAGAAATAGTATTACAAC 60
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1 GACAGAAAATGTAACATAGCCTCATGTTATTTCCTAAAACCCCAGAAATAGAATTACAAC 60
Query 61 TCTTTTCTATATTAACCCCATCGATCTTTCGATTCATTTGTTCTAAGCATTGTGTATACC 120
|| | |||||||||||||| |||||||||| || ||||||||||||||||||| ||||||
Sbjct 61 TCCTCTCTATATTAACCCCGTCGATCTTTCTATCCATTTGTTCTAAGCATTGTATATACC 120
Query 121 AAACACGAAAAGATCCCTTCCCCCTaaaaaaaaaataaaaaaaTTCAGAGCTAGAAGGGG 180
|||| |||||| ||||| |||||||||||||| || ||||||| ||||||||||||||||
Sbjct 121 AAACGCGAAAACATCCCCTCCCCCTAAAAAAACAA-AAAAAAA-TCAGAGCTAGAAGGGG 178
Query 181 CCTCATAGTTATAGCCACAGTTATAGGCCCCATCTGCTCCATTTTTAACATGTGTAGAAA 240
||| ||||| ||||| |||||| |||||||||||||| | ||||||||||||
Sbjct 179 CCTTTTAGTTTTAGCCTCAGTTACAGGCCCCATCTGCT-C--------CATGTGTAGAAA 229
Query 241 ATCATATTAGAAAAGTAGGAAAAAA-TACTTG--------AGCAAAGATACCTTTTTCGA 291
||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 230 ATCATATTAGAAAAGTAGGAAAAAATTACTTGAAAACTACAGCAAAGATACCTTTTTCGA 289
Query 292 CCTTTAGAATTTTTGTGAATATATAGGAAACAG-AAAAAATGGGTTCTGA-TGGTGACAA 349
||||||||||||||||| | ||||||||||||| |||||||||||||| | |||||||||
Sbjct 290 CCTTTAGAATTTTTGTG-A-ATATAGGAAACAGAAAAAAATGGGTTCT-ATTGGTGACAA 346
Query 350 GAAGAAGAAATTCATCGTCGCCGGTAGTGTCTCCGGTTTTCTAGTCATCATGGTTGTCTC 409
||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 347 GAAAAAGAAATTCATCATCGCCGGTAGTGTCTCGGGTTTCCTAGTCATCATGGTTGTCTC 406
Query 410 TGTAGCCGTTGTAACGTCTAAACACTCTCCCAAAGACGATGAAAATCATATC-AGAAAAA 468
||||||||||||||| ||||||||||||||||||| |||||||||||||||| || ||||
Sbjct 407 TGTAGCCGTTGTAACCTCTAAACACTCTCCCAAAGCCGATGAAAATCATATCAAG-AAAA 465
Query 469 CCACCAAAGCGGTTCAAGCAGTTTGTGCACCCACTGACTTCAAAGACACTTGTGTTAACA 528
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 466 CCACCAAAGCGGTTCAAGCAGTTTGTGCACCCACTGACTTTAAAGACACTTGTGTTAACA 525
Query 529 GCTTAATGGGTGCTTCTCCCGATTCCGATGACCCTGTCGACCTCATCAAACTCGGCTTCA 588
|||||||||||||||||||| |||||| ||| ||| |||||||||||||||| |||||||
Sbjct 526 GCTTAATGGGTGCTTCTCCCAATTCCGCTGAGCCTCTCGACCTCATCAAACTAGGCTTCA 585
Query 589 AGGTCACTATCAAATCCATCAACGAAAGCCTGGAAAAGGCCTCTGGAGATATCAAAGCCA 648
| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 586 ACATCACTATCAAATCCATCAACGAAAGCCTCAAAAAGGCCTCTGGAGATGTCAAAGCCA 645
Query 649 AGGCTGACAAGAACCCAGAAGCAAAGGGTGCTTTCGAGCTGTGTGAGAAGCTGATGATTG 708
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 646 AGGCTGACAAAAACCCAGAAGCGAAGGGTGCTTTCGAGCTGTGTGAGAAGCTGATGATTG 705
Query 709 ATGCTATCGATGACTTGAAGAAGTGTATGGATCATGGATTCTCGGTTGATCAGATCGAGG 768
||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 706 ATGCTATTGACGACTTGAAGAAGTGTATGGATCATGGATTCTCGGTTGATCAGATTGAGG 765
Query 769 TCTTTGTTGAGGATCTACGGGTTTGGCTAAGTGGCTCCATCGCATTCCAGCAAACATGTA 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 TCTTTGTTGAGGATCTACGGGTTTGGCTAAGTGGCTCCATCGCATTCCAGCAAACATGTA 825
Query 829 TGGATTCCTTTGGGGAAATTAAGTCTAATCTTATGCAAGACATGCTCAAGATCTTCAAAA 888
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 826 TGGATTCCTTTGGGGAAATTAAGTCCAATCTTATGCAAGACATGCTCAAGATCTTCCAAA 885
Query 889 CATCAAGAGAGCTTAGTAGCAATAGCCTTGCCATGGTTACTAGAATCTCCACTCTTATCC 948
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 886 CATCAAGAGAGCTTAGTAGCAATAGCCTTGCCATGGTTACTAGCATCTCCACTCTTCTCC 945
Query 949 CAAACTCCAACCTTACAGGACTAACCGGAGCTTTAGCAAAGTACGCGAGAAAGCTTCTGT 1008
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 946 CAAACTCCAACATTACAGGACTAACCGGAGCTTTAGCAAACTACGCGAGAAAGCTTCTGT 1005
Query 1009 CTACAGAAGATAGTATCCCAACTTGGGTTGGACCAGAGGCACGACGGCTCATGGCAGCTC 1068
||||||||||| ||||||||| |||||||||||||||||||||||| |||||||| || |
Sbjct 1006 CTACAGAAGATGGTATCCCAAATTGGGTTGGACCAGAGGCACGACGACTCATGGCGGCAC 1065
Query 1069 -A--AGGAGG---AGGACCTGGACCTGTGAAGGCTAATGCCGTGGTGGCTCAAGACGGAA 1122
| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1066 AAGGAGGAGGACCAGGACCTGGACCTGTGAAGGCTAATGCCGTGGTAGCTCAAGACGGAA 1125
Query 1123 CTGGACAGTTCAAGACTATCACCGATGCTCTAAATGCTGTGCCTAAAGGCAACAAAGTGC 1182
||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 1126 GTGGCCAGTTCAAGACTATCACCGATGCTCTAAATGGTGTGCCTAAAGGCAACACAGTTC 1185
Query 1183 CATTCATCATTCACATCAAAGAAGGTATCTACAAGGAGAAAGTTACGGTCACCAAGAAAA 1242
||||| | |||||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 1186 CATTCGTAATTCACATCAAACAAGGTATCTACAAGGAGAAAGTTATGGTCACCAGGAAAA 1245
Query 1243 TGCCTCACGTAACTTTCATCGGCGATGGGCCAAACAAGACTC-TAATCACCGGTAGTCTC 1301
||||| |||| ||||||||||||||||| ||||||||||| | |||||||||||||||||
Sbjct 1246 TGCCTTACGTCACTTTCATCGGCGATGGACCAAACAAGAC-CGTAATCACCGGTAGTCTC 1304
Query 1302 AATTTCGGTATCGGCAAGGTCAAGACCTTCCTAACAGCCACAATCACAATCGAAGGCGAC 1361
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1305 AATTTCGGTATCGGCAAGGTCAAGACCTTCCTAACAGCCACCATCACAGTCGAAGGCGAC 1364
Query 1362 CACTTCACAGCGAAGAACATCGGAATCGAGAACACAGCTGGACCAGAAGGAGGACAAGCG 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 CACTTCACAGCGAAGAACATCGGAATCGAGAACACAGCTGGACCAGAAGGAGGACAAGCG 1424
Query 1422 GTGGCGTTAAGAGTCTCGGCTGATTACGCCGTATTCCACAGCTGTCAAATCGACGGGCAC 1481
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1425 GTGGCATTAAGAGTCTCGGCGGATTACGCCGTATTCCACAGCTGTCAAATCGACGGGCAC 1484
Query 1482 CAAGACACGTTATACGTTCACTCTCACCGGCAATTCTACCGTGACTGCACAGTCTCGGGC 1541
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 CAAGACACATTATACGTTCACTCTCACCGGCAATTCTACCGTGACTGCACAGTCTCGGGC 1544
Query 1542 ACCGTCGATTTCATCTTCGGAGACGCGAAATGCATCCTCCAGAACTGTAAAATCGTCGTC 1601
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1545 ACCGTCGATTTCATCTTCGGAGACGCGAAATGCATACTCCAGAACTGTAAAATCGTCGTC 1604
Query 1602 CGAAAACCTAACAAAGGTCAAACGTGTATGGTTACAGCTCAGGGACGAAGTAACGTCCGT 1661
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1605 CGAAAACCTAACAAAGGTCAATCGTGTATGGTTACAGCTCAGGGACGAAGCAACGTCCGT 1664
Query 1662 GAATCGACAGGATTGGTGCTCCATGGCTGCCATATAACGGGAGATCCAGCGTATATTCCG 1721
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1665 GAATCGACCGGATTGGTGCTCCATGGCTGCCATATAACGGGAGATCCGGCGTATATTCCG 1724
Query 1722 ATGAAATCTGTGAATAAAGCTTACTTAGGAAGACCGTGGAAGGAGTTCTCGAGGACAATC 1781
||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||
Sbjct 1725 GTGAAATCTGTGAACAAAGCTTACCTAGGAAGGCCGTGGAAGGAGTTCTCGAGGACGATC 1784
Query 1782 ATTATGAAAACGACGATCGATGACGTCATCGATCCGGCGGGATGGCTTCCCTGGAGTGGA 1841
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1785 ATCATGAAGACGACGATCGATGACGTCATCGATCCGGCGGGATGGCTTCCTTGGAGTGGA 1844
Query 1842 GATTTTGCGCTCAAGACGCTATACTACGCCGAGCATATGAATACTGGGCCTGGATCGAAT 1901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 GATTTTGCGCTCAAGACGCTATACTACGCCGAGCATATGAATACTGGGCCTGGATCGAAT 1904
Query 1902 CAGGCCCAAAGAGTTAAATGGCCCGGAATTAAGAAACTAACGCCCCAAGATGCTCTTTTA 1961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 CAGGCCCAAAGAGTTAAATGGCCCGGAATTAAGAAACTAACGCCCCAAGATGCTCTTTTA 1964
Query 1962 TACACTGGCGACAGATTCTTACGTGGCGATACGTGGATCCCACAAACACAAGTTCCGTAT 2021
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1965 TACACTGGCGACAGATTCTTACGTGGCGATACGTGGATCCCACAAACACAAGTACCGTAT 2024
Query 2022 ACAGCTAA-AGTGTAGGAGATTCCAAATTTTGTAAAT 2057
||||| || | | ||||||||||||||||||||||||
Sbjct 2025 ACAGCAAACATT-TAGGAGATTCCAAATTTTGTAAAT 2060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79837153520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5