BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06840.1
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478003 jgi|Araly1|478003|fgenesh2_kg.3__704__AT3G06840.1 1088 0.0
> Ahg478003 jgi|Araly1|478003|fgenesh2_kg.3__704__AT3G06840.1
Length=772
Score = 1088 bits (589), Expect = 0.0
Identities = 701/753 (93%), Gaps = 15/753 (2%)
Strand=Plus/Plus
Query 50 AAACGACCTCGTAAGAAAAATGTCAAACATTTCCCCAATCTTCTCCATCTCCAACTCTCA 109
||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 19 AAACGACCTCGGAAGAAAAATGTCCAACATTTCCCCAATCTTCACCATCTCCAACTCTCA 78
Query 110 ACATTTCAGCGACTATGGCTTCGATCCCCAACTCCACTACTTTCAGGTTATGGAAGAAGC 169
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 79 ACATTTCAGCGACTATGGCTTCGATCCCCAGCTCCACTACTTTCAGGTTATGGAAGAAGC 138
Query 170 GAGGAAGCATAAGAGAGAAACGTCATCAAAATCATACACGAACGGTCTTCAATTCAAGAT 229
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 139 GAGGAAGCATAAGAGAGAAACGTCATCAAAATCATACATGAACGGTCTTCAATTCAAGAT 198
Query 230 CCAGAAACCCATTTCAAAAGACAACCCGACCCGGTCCACAATGCACAACGACAAGAAGAA 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 CCAGAAACCCATTTCAAAAGACAACCCGACCCGGTCCACAATGCACAACGACAAGAAGAA 258
Query 290 GAAACGGTGTTGGTGGAAGAAAGCTCTCCCTTTTTTCAAATGGCGGAAATGGCCAATCTC 349
||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 259 GAAACGGTGTTGGTGGAAGAAAGCTTTGCCTTTCTTCAAATGGCGGAAATGGCCAATCTC 318
Query 350 CACCGTCGGCGTGAACGAAGATCGTAGGG-TCAGGAACTTTCGCTCCGTAACCGGGTCCA 408
||||||||||||||||||||||||||||| | || || ||| || ||||||||||||| |
Sbjct 319 CACCGTCGGCGTGAACGAAGATCGTAGGGCT-AGAAATTTTGGCGCCGTAACCGGGTCGA 377
Query 409 TGTCAATGTCGGGTCCGATTTACGCAACGGAGAGTCTAATAAGTGGGTCGAACACACCGT 468
|||| |||||||||||||||||||||||||||||||| | | ||||||| ||||||||
Sbjct 378 TGTCGATGTCGGGTCCGATTTACGCAACGGAGAGTCTGA---GCGGGTCGAGCACACCGT 434
Query 469 ATCGTACAACAACGAGTAA-A--CCTTCGTCGGGACCTATAGCGGGAACATTGACGCCGG 525
| ||||| || |||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 435 ACCGTACGACGACGACAAATAGACCTTCGTCGGGACCTATAGCGGGAACATTGACGCCGG 494
Query 526 CGAGGAAAGGTGACGTGGCGATTCCTTATCTGAGCTTACGAGAGCTTAACATGGAGCAGC 585
|||||| |||||||||||||| || |||||||||||||||||||| |||||||| ||||
Sbjct 495 CGAGGAGAGGTGACGTGGCGAACCCATATCTGAGCTTACGAGAGCTAAACATGGACCAGC 554
Query 586 CACAGAGGATTTCTATCTCTTCTTCCCCAATTTACTTGGTCACGTAAAAAGTTAACAACT 645
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 555 CACAGAGGATTTCTATCTCTTCTTCCCCCATTTACTTGGTCACGTAAAAAGTTAACAACC 614
Query 646 CCTTACAAAAA-GAACAATTTAACTTTTCTTTTTGGTCGGGG-AAAAATATTCAATAGAA 703
||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 615 CCTTACAAAAAAGAATAATTTAACTTTTCTTTTTGGTCGGGGGAAAAA-ATTCAATAGGA 673
Query 704 AAATGTGATGTTTCATCTATCTTTTCAAAATTTGGTGAAAGCTGCAA-A--GTTTCATCT 760
||||||||||||||||||||||||| || | |||||||||||||| | |||||||||
Sbjct 674 AAATGTGATGTTTCATCTATCTTTTTGCAACT-GGTGAAAGCTGCAACAAAGTTTCATCT 732
Query 761 ATCTCACGTGAATCAATTTAGTTGCCTCTTTTT 793
||||||||||||||||| |||||||||||||||
Sbjct 733 ATCTCACGTGAATCAATCTAGTTGCCTCTTTTT 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31756389861
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5