BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G06850.1 Length=1848 Score E Sequences producing significant alignments: (Bits) Value Ahg928343 jgi|Araly1|928343|scaffold_300800.1 2399 0.0 > Ahg928343 jgi|Araly1|928343|scaffold_300800.1 Length=1497 Score = 2399 bits (1299), Expect = 0.0 Identities = 1428/1491 (96%), Gaps = 5/1491 (0%) Strand=Plus/Plus Query 141 GACCAACCGTTCATAACAATGATCGCGCGACGGATCTGGCGAAGCCACCGGTTTCTCCGC 200 ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 3 GACCAACCGTTAACAACAATGATCGCGCGACGGATCTGGCGGAGCCACCGGTTTCTCCGC 62 Query 201 CCATTCAGCTCGTCATCTGTTTGCTCTCCGCCGTTCCGGGTACCGGAGTATCTTTCTCAG 260 || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 63 CCTTTCAGCTCGTCATCTGTTTGCGCTCCGCCGTTCCGGGTACCGGAGTATCTTTCTCAG 122 Query 261 TCGTCTTCCTCTCCGGCGTCGCGCCCATTCTTTGTTCACCCTCCCACTTTGATGAAATGG 320 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 TCGTCTTCCTCTCCAGCGTCGCGCCCATTCTTTGTTCACCCTCCCACTTTGATGAAATGG 182 Query 321 GGTGGAGGAAGTAGAAGCTGGTTTTCGAACGAAGCCATGGCCACTGATTCAAATTCAGGG 380 ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 183 TGTGGAGGAAGTAGAAGCTGGTTTTCTAACGAAGCCATGGCCATTGATTCAAATTCAGGG 242 Query 381 TTAATTGATGTGCCACTAGCTCAAACTGGGGAAGGTATTGCTGAATGTGAGCTTCTCAAG 440 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 243 TTAATTGATGTGCCACTAGCACAAACTGGGGAAGGTATTGCTGAATGTGAGCTTCTCAAG 302 Query 441 TGGTTTGTCAAAGAGGGAGATTCTGTGGAAGAGTTTCAGCCACTCTGTGAAGTTCAGAGC 500 ||||||||||||||||||||| | || ||||||||||||||||||||||||||||| ||| Sbjct 303 TGGTTTGTCAAAGAGGGAGATCCGGTAGAAGAGTTTCAGCCACTCTGTGAAGTTCAAAGC 362 Query 501 GATAAAGCAACTATAGAGATCACAAGTCGTTTTAAAGGG-AAAGTGGCTCTGATTTCACA 559 |||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| Sbjct 363 GATAAAGCAACTATAGAGATAACAAGTCGTTTT-AAGGGCAAAGTGGCTCTGATTTCACA 421 Query 560 TTCTCCAGGTGACATTATTAAGGTTGGAGAGACTCTGGTTAGGTTGGCGGTTGAAGACTC 619 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 422 CACTCCAGGTGACATTATTAAGGTTGGAGAGACTCTGGTTAGGCTGGCGGTGGAAGACTC 481 Query 620 GCAGGATTCG---CTTCTAACCACTGATAGTTCAGAAATTGTAACTCTGGGAGGTTCAAA 676 |||||||||| ||||||||| |||||| |||||||||| ||| |||||| |||||||| Sbjct 482 GCAGGATTCGCTTCTTCTAACCTCTGATACTTCAGAAATTATAAATCTGGGCGGTTCAAA 541 Query 677 GCAGGGAACAGAAAATCTTCTTGGAGCTCTCTCAACGCCTGCGGTTCGTAACCTTGCAAA 736 |||| ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 542 GCAGAGAACAGACAATCTTGTTGGAGCTCTCTCAACGCCTGCTGTTCGTAACCTTGCAAA 601 Query 737 AGACCTTGGCATAGATATCAATGTTATAACTGGAACTGGTAAAGATGGTAGAGTTTTGAA 796 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 602 AGACCTTGGCATAGATATCAATGTCATAACTGGAACTGGTAAAGATGGAAGAGTTTTGAA 661 Query 797 AGAGGATGTTCTCCGGTTTAGTGACCAGAAAGGATTTGTAACAGATTCAGTTTCTTCTGA 856 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 AGAAGATGTTCTCCGATTTAGTGACCAGAAAGGATTTGTAACAGATTCAGTTTCTTCTGA 721 Query 857 GCATGCTGTTATAGGAGGAGACTCGGTTTCCACTAAAGCTAGTAGTAACTTTGAAGATAA 916 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 722 GCATGCTGTTATAGGAGAAGACTCGGTTTCCACTAAAGCTAGTAGTAACTTTGAAGATAA 781 Query 917 AACAGTTCCTCTAAGGGGATTCAGCCGAGCAATGGTCAAGACAATGACTATGGCTACAAG 976 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 782 AACAGTTCCTCTAAGGGGATTCAGCCGAGCAATGGTCAAGACAATGACTATGGCTACAAG 841 Query 977 TGTACCGCATTTTCATTTTGTTGAAGAGATAAACTGCGACTCACTTGTGGAGCTCAAGCA 1036 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 842 TGTACCGCATTTTCATTTCGTTGAAGAGATAAACTGCGACGCACTTGTGGAGCTCAAGCA 901 Query 1037 GTTCTTCAAAGAGAACAATACAGATTCCACCATCAAACACACTTTTCTTCCTACTTTAAT 1096 ||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 902 ATTCTTTAAACAGAACAATACAGATTCCACCATCAAACACACTTTCCTTCCTACTTTAAT 961 Query 1097 CAAGTCTCTGTCAATGGCTCTAACCAAATATCCCTTCGTGAATAGTTGCTTCAACGCGGA 1156 |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct 962 CAAGTCACTGTCAATGGCTCTAACCAAATACCCCTTTGTGAATAGTTGCTTCAACGCAGA 1021 Query 1157 ATCTCTCGAGATCATTCTCAAAGGTTCACATAATATTGGAGTTGCAATGGCCACTGAACA 1216 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1022 ATCTCTCGAGATCATTCTCAAAGGTTCACATAACATTGGAGTTGCAATGGCCACTGAACA 1081 Query 1217 TGGCCTTGTCGTTCCTAATATAAAGAATGTTCAGTCATTATCTCTGCTAGAGATAACCAA 1276 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1082 TGGCCTTGTTGTTCCTAATATAAAGAATGTACAGTCATTATCTCTGCTAGAGATAACCAA 1141 Query 1277 AGAGCTGTCCCGGTTACAACATTTGGCAGCAAACAACAAACTTAACCCCGAGGATGTGAC 1336 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1142 GGAGCTGTTGCGGTTACAACATTTGGCAACAAACAACAAACTTAACCCCGAGGATGTGAC 1201 Query 1337 TGGTGGAACCATAACTCTGAGTAACATTGGAGCAATTGGTGGTAAATTCGGATCCCCTCT 1396 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1202 TGGTGGAACCATAACTCTGAGTAACATTGGAGCAATCGGTGGGAAATTCGGATCCCCTCT 1261 Query 1397 TTTAAACTTACCGGAAGTTGCAATCATCGCTCTTGGAAGAATCGAGAAAGTTCCAAAATT 1456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1262 TTTAAACTTACCGGAAGTTGCAATCATCGCTCTTGGAAGAATCGAGAAAGTTCCAAAATT 1321 Query 1457 CTCAAAAGAAGGAACTGTCTATCCTGCATCGATAATGATGGTTAACATTGCTGCGGATCA 1516 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1322 CTCAAAAGAAGGAACTGTTTATCCTGCATCGATAATGATGGTTAACATTGCTGCGGATCA 1381 Query 1517 TAGAGTTCTAGATGGGGCAACGGTAGCTCGGTTTTGCTGCCAGTGGAAAGAGTATGTCGA 1576 |||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 1382 TAGAGTTCTAGACGGAGCAACAGTAGCTCGGTTTTGCTGCCAGTGGAAAGAGTATATCGA 1441 Query 1577 GAAACCGGAGCTGCTGATGCTTCAAATGAGATAAGAAGGAAAGGTTCATGT 1627 |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1442 GAAACCGGAGTTGCTGATGCTTCAAATGAGATAAGAAGGAAAGGTTCATGT 1492 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69400426390 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5