BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06850.1
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928343 jgi|Araly1|928343|scaffold_300800.1 2399 0.0
> Ahg928343 jgi|Araly1|928343|scaffold_300800.1
Length=1497
Score = 2399 bits (1299), Expect = 0.0
Identities = 1428/1491 (96%), Gaps = 5/1491 (0%)
Strand=Plus/Plus
Query 141 GACCAACCGTTCATAACAATGATCGCGCGACGGATCTGGCGAAGCCACCGGTTTCTCCGC 200
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3 GACCAACCGTTAACAACAATGATCGCGCGACGGATCTGGCGGAGCCACCGGTTTCTCCGC 62
Query 201 CCATTCAGCTCGTCATCTGTTTGCTCTCCGCCGTTCCGGGTACCGGAGTATCTTTCTCAG 260
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 63 CCTTTCAGCTCGTCATCTGTTTGCGCTCCGCCGTTCCGGGTACCGGAGTATCTTTCTCAG 122
Query 261 TCGTCTTCCTCTCCGGCGTCGCGCCCATTCTTTGTTCACCCTCCCACTTTGATGAAATGG 320
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TCGTCTTCCTCTCCAGCGTCGCGCCCATTCTTTGTTCACCCTCCCACTTTGATGAAATGG 182
Query 321 GGTGGAGGAAGTAGAAGCTGGTTTTCGAACGAAGCCATGGCCACTGATTCAAATTCAGGG 380
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 183 TGTGGAGGAAGTAGAAGCTGGTTTTCTAACGAAGCCATGGCCATTGATTCAAATTCAGGG 242
Query 381 TTAATTGATGTGCCACTAGCTCAAACTGGGGAAGGTATTGCTGAATGTGAGCTTCTCAAG 440
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 243 TTAATTGATGTGCCACTAGCACAAACTGGGGAAGGTATTGCTGAATGTGAGCTTCTCAAG 302
Query 441 TGGTTTGTCAAAGAGGGAGATTCTGTGGAAGAGTTTCAGCCACTCTGTGAAGTTCAGAGC 500
||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |||
Sbjct 303 TGGTTTGTCAAAGAGGGAGATCCGGTAGAAGAGTTTCAGCCACTCTGTGAAGTTCAAAGC 362
Query 501 GATAAAGCAACTATAGAGATCACAAGTCGTTTTAAAGGG-AAAGTGGCTCTGATTTCACA 559
|||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||
Sbjct 363 GATAAAGCAACTATAGAGATAACAAGTCGTTTT-AAGGGCAAAGTGGCTCTGATTTCACA 421
Query 560 TTCTCCAGGTGACATTATTAAGGTTGGAGAGACTCTGGTTAGGTTGGCGGTTGAAGACTC 619
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 422 CACTCCAGGTGACATTATTAAGGTTGGAGAGACTCTGGTTAGGCTGGCGGTGGAAGACTC 481
Query 620 GCAGGATTCG---CTTCTAACCACTGATAGTTCAGAAATTGTAACTCTGGGAGGTTCAAA 676
|||||||||| ||||||||| |||||| |||||||||| ||| |||||| ||||||||
Sbjct 482 GCAGGATTCGCTTCTTCTAACCTCTGATACTTCAGAAATTATAAATCTGGGCGGTTCAAA 541
Query 677 GCAGGGAACAGAAAATCTTCTTGGAGCTCTCTCAACGCCTGCGGTTCGTAACCTTGCAAA 736
|||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 542 GCAGAGAACAGACAATCTTGTTGGAGCTCTCTCAACGCCTGCTGTTCGTAACCTTGCAAA 601
Query 737 AGACCTTGGCATAGATATCAATGTTATAACTGGAACTGGTAAAGATGGTAGAGTTTTGAA 796
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 602 AGACCTTGGCATAGATATCAATGTCATAACTGGAACTGGTAAAGATGGAAGAGTTTTGAA 661
Query 797 AGAGGATGTTCTCCGGTTTAGTGACCAGAAAGGATTTGTAACAGATTCAGTTTCTTCTGA 856
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AGAAGATGTTCTCCGATTTAGTGACCAGAAAGGATTTGTAACAGATTCAGTTTCTTCTGA 721
Query 857 GCATGCTGTTATAGGAGGAGACTCGGTTTCCACTAAAGCTAGTAGTAACTTTGAAGATAA 916
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GCATGCTGTTATAGGAGAAGACTCGGTTTCCACTAAAGCTAGTAGTAACTTTGAAGATAA 781
Query 917 AACAGTTCCTCTAAGGGGATTCAGCCGAGCAATGGTCAAGACAATGACTATGGCTACAAG 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 AACAGTTCCTCTAAGGGGATTCAGCCGAGCAATGGTCAAGACAATGACTATGGCTACAAG 841
Query 977 TGTACCGCATTTTCATTTTGTTGAAGAGATAAACTGCGACTCACTTGTGGAGCTCAAGCA 1036
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 842 TGTACCGCATTTTCATTTCGTTGAAGAGATAAACTGCGACGCACTTGTGGAGCTCAAGCA 901
Query 1037 GTTCTTCAAAGAGAACAATACAGATTCCACCATCAAACACACTTTTCTTCCTACTTTAAT 1096
||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 902 ATTCTTTAAACAGAACAATACAGATTCCACCATCAAACACACTTTCCTTCCTACTTTAAT 961
Query 1097 CAAGTCTCTGTCAATGGCTCTAACCAAATATCCCTTCGTGAATAGTTGCTTCAACGCGGA 1156
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 962 CAAGTCACTGTCAATGGCTCTAACCAAATACCCCTTTGTGAATAGTTGCTTCAACGCAGA 1021
Query 1157 ATCTCTCGAGATCATTCTCAAAGGTTCACATAATATTGGAGTTGCAATGGCCACTGAACA 1216
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1022 ATCTCTCGAGATCATTCTCAAAGGTTCACATAACATTGGAGTTGCAATGGCCACTGAACA 1081
Query 1217 TGGCCTTGTCGTTCCTAATATAAAGAATGTTCAGTCATTATCTCTGCTAGAGATAACCAA 1276
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1082 TGGCCTTGTTGTTCCTAATATAAAGAATGTACAGTCATTATCTCTGCTAGAGATAACCAA 1141
Query 1277 AGAGCTGTCCCGGTTACAACATTTGGCAGCAAACAACAAACTTAACCCCGAGGATGTGAC 1336
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1142 GGAGCTGTTGCGGTTACAACATTTGGCAACAAACAACAAACTTAACCCCGAGGATGTGAC 1201
Query 1337 TGGTGGAACCATAACTCTGAGTAACATTGGAGCAATTGGTGGTAAATTCGGATCCCCTCT 1396
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1202 TGGTGGAACCATAACTCTGAGTAACATTGGAGCAATCGGTGGGAAATTCGGATCCCCTCT 1261
Query 1397 TTTAAACTTACCGGAAGTTGCAATCATCGCTCTTGGAAGAATCGAGAAAGTTCCAAAATT 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TTTAAACTTACCGGAAGTTGCAATCATCGCTCTTGGAAGAATCGAGAAAGTTCCAAAATT 1321
Query 1457 CTCAAAAGAAGGAACTGTCTATCCTGCATCGATAATGATGGTTAACATTGCTGCGGATCA 1516
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 CTCAAAAGAAGGAACTGTTTATCCTGCATCGATAATGATGGTTAACATTGCTGCGGATCA 1381
Query 1517 TAGAGTTCTAGATGGGGCAACGGTAGCTCGGTTTTGCTGCCAGTGGAAAGAGTATGTCGA 1576
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1382 TAGAGTTCTAGACGGAGCAACAGTAGCTCGGTTTTGCTGCCAGTGGAAAGAGTATATCGA 1441
Query 1577 GAAACCGGAGCTGCTGATGCTTCAAATGAGATAAGAAGGAAAGGTTCATGT 1627
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 GAAACCGGAGTTGCTGATGCTTCAAATGAGATAAGAAGGAAAGGTTCATGT 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69400426390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5