BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06868.1
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478007 jgi|Araly1|478007|fgenesh2_kg.3__708__AT3G06868.1 2119 0.0
Ahg949389 jgi|Araly1|949389|scaffold_801276.1 198 8e-50
> Ahg478007 jgi|Araly1|478007|fgenesh2_kg.3__708__AT3G06868.1
Length=1477
Score = 2119 bits (1147), Expect = 0.0
Identities = 1398/1508 (93%), Gaps = 62/1508 (4%)
Strand=Plus/Plus
Query 16 CTCTCTCTCTCAAAAGAAGCTGAATTCTTTCTTCGTTTGATGCCGTGAATCACAAACAGA 75
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2 CTCTCTCTCTCAAAAGAAGCTGAATTCTTTCTTCGTTAGATGCCGTGAATCACAAACAGA 61
Query 76 AACAGAGGAATC--AGAGAGTACTTCACCATCTTGATTCTTTCTTCTTCTTGTTTCCTTC 133
|||||||||| | |||||| ||||||| ||||||||||||||||||||||| || ||||
Sbjct 62 AACAGAGGAA-CAAAGAGAGAACTTCACTATCTTGATTCTTTCTTCTTCTTGCTTGCTTC 120
Query 134 TTTATTACAATGGTGGAGCTCAAAGATCAACAAGACATGGGAGAAGGTATGCAATGCATT 193
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 TTTATTACAATGGTGGAGCTCAAAGAT---CAAGACATGGGAGAAGGTATGCAATGCATA 177
Query 194 ACACATCCTTACACAAAGAACCCAGGTGGGATCTGTGCTTTATGTCTCCAGGAAAAGCTT 253
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AGACATCCTTACACAAAGAACCCAGGTGGGATCTGTGCTTTATGTCTCCAGGAAAAGCTT 237
Query 254 GGTAAGCTCGTCACTTCCTCTTTCCCTGTTCCTAAACCCAACCAtctctcttcttcttct 313
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 238 GGTAAGCTCGTCACTTCCTCTTTCCCTGTTCCAAAACCCAACCATCTCTCTTCTTCTTCT 297
Query 314 cctaaatccttcactccttccacgac--c-tctctcgctctgtctctctcATCGGCAAGC 370
||||||||||||||||||||||| || | ||||||||||||||||||||||||| ||||
Sbjct 298 CCTAAATCCTTCACTCCTTCCACCACATCATCTCTCGCTCTGTCTCTCTCATCGGGAAGC 357
Query 371 AATGGCAGAGACTCCACTAACAACAACAATCTCCCGTTTCTTCTGGCTAAGAAGAAGAAG 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AATGGCAGAGACTCCACTAACAACAACAATCTCCCGTTTCTTCTGGCTAAGAAGAAGAAG 417
Query 431 AACATGCTCGCAGcttcttcttcatcttcttcttcttcctcttcgtcttcttctGCGAAT 490
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||
Sbjct 418 AACATGCTCGCAGCTTCTTCTTCCTCTTCTTCTTCCTCCTCTTCGTCTTCTTCGGCTAAT 477
Query 491 CTTATCTACAAGAGAAGCAAATCGACTGCTGCTGCTTACGGTGAGAGTTTCAGCCAAAGG 550
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 478 CTTATCTACAAGAGAAGCAAATCGACTGCTGCTGCTTATGGTGAGAGTTTCAGCCAGAGG 537
Query 551 AAACGAAGTGGGTTTTGGTC-TTTTTTCCATCTCTACTCTTCAAAACATCAGATCAGCAA 609
|||||||||||||| ||||| ||| || || |||||||||||||||||||||||||| ||
Sbjct 538 AAACGAAGTGGGTTCTGGTCGTTTCTT-CACCTCTACTCTTCAAAACATCAGATCAGTAA 596
Query 610 CACCACCAAAAAAGTCGATAACTTTAGCCATTTAAGGAGGAACCAGAGAACAGAGTCAAA 669
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 597 CACCACCAAAAAAGTCGATAACTTTAGCCATTCAAGGAGGAACCAGAGAACAGAGTCAAC 656
Query 670 AACAGAGACTTCTTCCATGAGGGTCGGTGGTGGTGGAGGCATTGATGTGATAGTTGAGGA 729
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AACAGAGACTTCTTCGAAGAGGGTCGGTGGTGGTGGAGGCATTGATGTGATAGTTGAGGA 716
Query 730 AGAAGATGAGAG---TCCTAACAAAGTGGTTTCAGAAACGCCAACGAA---TGGTATAGG 783
|||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 717 AGAAGATGAGAGTCCTCCTAACAAAGTGGTTTCAGAAACGCCAACAAATGGTGGTATAGG 776
Query 784 TGGTGGTGGTGGTTCGTCGTTTGGGAGGAAAGTGTTGAGATCTAGATCTGTTGGTTGTGG 843
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGGTGGTGGTGGTTCGTCTTTTGGGAGGAAAGTGTTGAGATCTAGATCTGTTGGTTGTGG 836
Query 844 TAGTAGAAGCTTCTCTGGTGATTTCTTTGAGAGGATCTCTAATGGGTTTGGTGATTGTGC 903
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AAGTAGAAGCTTCTCTGGTGATTTCTTTGAGAGGATCTCTAATGGGTTTGGTGATTGTGC 896
Query 904 CTTGAGAAGGATTGAGTCACAGAGAGAAGCCACTAAGGTCATTAGTAATGGTGGTGGTGG 963
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 897 CTTGAGAAGGATTGAGTCACAGAGAGAAGCCACCAAGGTCATTAGTAATGGTGGTGGTGG 956
Query 964 TGAAGCAGCAGATGCAATGAGTGAAATGGTCAAATGTGGTGGCATCTTTGGTGGGTTTAT 1023
|||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGAAGCAGCAAATGCGATGAATGAAATGGTCAAATGTGGTGGCATCTTTGGTGGGTTTAT 1016
Query 1024 Gatcatgacatcatcatctacaacatcatcaacaacatcatcaacggttgatcatcatca 1083
||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1017 GATAATGACACCATCATCTACATCATCATCAACAACATCATCAACGGTTGGTCATCATCA 1076
Query 1084 taatcatAAGATGGGGAACAGAAACTGGGGATGGGCTTTCGCAAGTCCAATGAGAGCCAA 1143
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1077 TAATCATAAGATGGGGAACAGAAACTGGGGATGGGCTTTTGCAAGTCCAATGAGAGCCAA 1136
Query 1144 AGCTACTGCTACT-C--ATAGAGGTCGTACCATTACAGAGTCCACAGCTGACAACAAGAA 1200
||||||| ||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1137 AGCTACTACTACTACTCATAGAGGTCGTACCATTACAGAGTCTTCAGCTGACAACAAGAA 1196
Query 1201 CACATCTTCAAATTTGGACTCAATCCCTTCATTGTTGGCTTTGAAAAGCTAAAGCGAGAT 1260
||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1197 CACATCTCCAAATTTGGACTCAATTCCTTCATTGTTGGCTTTGAAAAGCTGAAGCGAGA- 1255
Query 1261 GGCATTACTAAGTACTTATAATCCGAATTTAGAGAATTTCCATATTTCATTCATGTGTTT 1320
| || | | |||| | | | ||| | |||| || | ||| ||||||
Sbjct 1256 G--ATG-C-AT-TACT-A-AGT---AAT--A-----TTTC-AT-T--CAT----GTGTTT 1290
Query 1321 TTAGTTAGGTTGTTCTTTCGTTCTTTGGACATTGGCTTGATCTTTTAATGTAATGTCACA 1380
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 TTAGTTAGGCTGTTCTTTCGTTCTTTGGACATTGGCTTGATCTTTTAATGTAATGTCACA 1350
Query 1381 CTATTTTCTTGTTCCTTTCTATGTTTGGCATCTTTGGTTATATGTTA-TT------CAT- 1432
|||||||||||||| ||||||||||||||||||| ||||||||||| || |||
Sbjct 1351 CTATTTTCTTGTTCATTTCTATGTTTGGCATCTT-GGTTATATGTTTGTTGTTGTTCATT 1409
Query 1433 A--A-----GCTTGAAACCTTTAGGAGAATGAGCTTAGGATACTTGCTGCTTTGTCTTTT 1485
| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 ATCACACAAGCTTGAAACCTTTAGGAGAATGAGCTTAGGATACTTGCTGCTTTGTCTTTT 1469
Query 1486 ACTCTTCT 1493
||||||||
Sbjct 1470 ACTCTTCT 1477
> Ahg949389 jgi|Araly1|949389|scaffold_801276.1
Length=1196
Score = 198 bits (107), Expect = 8e-50
Identities = 212/262 (81%), Gaps = 10/262 (4%)
Strand=Plus/Plus
Query 808 GAGGAAAGTGTTGAGATCTAGATCTGTTGGTTGTGGTAGTAGAAGCTTCTCTGGTGATTT 867
||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 698 GAGGAAAGTGTCGAGATCTAGATCTGTTGGGTGTGGAAGTAGAAGCTTCTCTGGTGATTT 757
Query 868 CTTTGAGAGGATCTCTAATGGGTTTGGTGATTGTGCCTTGAGAAG-GATTGAGTCACAGA 926
|||||||||||| ||||||||||||| |||||| | |||||||| | ||||||||||||
Sbjct 758 CTTTGAGAGGATAACTAATGGGTTTGGAGATTGTACTTTGAGAAGAG-TTGAGTCACAGA 816
Query 927 GAGAAGCCACTAAGGTCATTAG-TAATGGTGGTG-GTGGTGAAGC--AGCAGATGCAATG 982
|||||| | ||| || || ||| ||| || || || | || | ||| ||
Sbjct 817 GAGAAGGTAATAATAACAA-AGGTAACAA-GGTTAGTAGT-AACCCTAGTA-ATGGTGTG 872
Query 983 AGTGAAATGGTCAAATGTGGTGGCATCTTTGGTGGGTTTATGatcatgacatcatcatct 1042
|| || ||||| | ||||||||| |||||||||||||||||||| ||||| ||||| |||
Sbjct 873 AGAGAGATGGTGAGATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGTCATCGTCT 932
Query 1043 acaacatcatcaacaacatcat 1064
| | ||||| || ||||||
Sbjct 933 TCTTCTTCATCTTCATCATCAT 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55878389415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5