BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G06890.1 Length=731 Score E Sequences producing significant alignments: (Bits) Value Ahg478009 jgi|Araly1|478009|fgenesh2_kg.3__710__AT3G06890.1 793 0.0 > Ahg478009 jgi|Araly1|478009|fgenesh2_kg.3__710__AT3G06890.1 Length=576 Score = 793 bits (429), Expect = 0.0 Identities = 522/564 (93%), Gaps = 18/564 (3%) Strand=Plus/Plus Query 57 aaaaaaaaCACTCTCTGCGATTCACACTAAGTATCTAATGTATCAAGATCGTCAAGGCGT 116 |||||| |||||||||| ||||||||||||||||| ||||||||||||||| |||||||| Sbjct 1 AAAAAACACACTCTCTGTGATTCACACTAAGTATC-AATGTATCAAGATCGGCAAGGCGT 59 Query 117 TGTAGGAGGCGGAGGCGGTGGCGGTTCTGCGCCACACGGAATCATACTCGCCGTCGTTGT 176 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 60 TGTAGGAGGCGGAGGCGGTGGCGGATCTGCGCCACACGGAATCATACTCGCCGTCGTTGT 119 Query 177 TGCATTAGTGGTGCTTGTTCCGTTCTTCATCGGAGACAGTGGTGAGGCCATTACAGATGC 236 |||||| || ||||||||||| ||||||||||||||| ||||||| |||||||||||||| Sbjct 120 TGCATTGGTAGTGCTTGTTCCCTTCTTCATCGGAGACGGTGGTGAAGCCATTACAGATGC 179 Query 237 GATCGCAGAGCTTCTTAGTCCGGTGGGACTTCTATTGCTTCCTATCATCCTCCTCCTCAC 296 ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| Sbjct 180 GATCGCAGAGCTTCTTAGTCCGGTGGGACTTCTCTTACTTCCCATCATCCTCCTCCTCAC 239 Query 297 TATACAGTTTCTCTCGTCGGAACGTGGTTCCTTCGTGTCGGCCATTTTCTCCACCGGAGA 356 ||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 240 TATCCAGTTCCTCTCGTCGGAACGTGGTTCCTTCGTATCGGCCATTTTCTCCACCGGAGA 299 Query 357 ACCAGAATCGATTCACAGGGTTAGCGGATCTCCCGTGGGTGTTGCTCTCTTCCTCGTACT 416 ||| |||||||||||| ||||||||||||||||||| ||||| ||| | ||||||||||| Sbjct 300 ACCCGAATCGATTCACCGGGTTAGCGGATCTCCCGTCGGTGTCGCTTTGTTCCTCGTACT 359 Query 417 GATCTTGTTCTTACTCTACTACCGCTTCTCTATCTTCGGCGGAGATGATGGTTCCGATGA 476 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 360 GATCTTGTTCTTACTCTACTACCGCTTCTCCATCTTCGGCGGAGATGATGGTTCCGATGA 419 Query 477 CTGATGCGACGTCGTCTTTTCAGATCTAGttttttccctctttttcttttttaggga-a- 534 ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | Sbjct 420 CTGATGCGACGTCGTATTTTCAGATCTAGTTTTTTCCCTCTTTTTCTTTTTT-GGGAGAT 478 Query 535 aacaatatat-t-tat----gtcttt----attcgattttc-gtttttattttattttgt 583 |||||||||| | ||| |||||| |||||||||| |||||||||||||||||| Sbjct 479 AACAATATATATATATTTATGTCTTTCTTTATTCGATTTTTTGTTTTTATTTTATTTTGT 538 Query 584 ttGACAGTTGAAAGTCAAACTATA 607 |||||||||| ||||||||||| Sbjct 539 --GACAGTTGAA-GTCAAACTATA 559 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26914779402 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5