BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06890.1
Length=731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478009 jgi|Araly1|478009|fgenesh2_kg.3__710__AT3G06890.1 793 0.0
> Ahg478009 jgi|Araly1|478009|fgenesh2_kg.3__710__AT3G06890.1
Length=576
Score = 793 bits (429), Expect = 0.0
Identities = 522/564 (93%), Gaps = 18/564 (3%)
Strand=Plus/Plus
Query 57 aaaaaaaaCACTCTCTGCGATTCACACTAAGTATCTAATGTATCAAGATCGTCAAGGCGT 116
|||||| |||||||||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1 AAAAAACACACTCTCTGTGATTCACACTAAGTATC-AATGTATCAAGATCGGCAAGGCGT 59
Query 117 TGTAGGAGGCGGAGGCGGTGGCGGTTCTGCGCCACACGGAATCATACTCGCCGTCGTTGT 176
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 TGTAGGAGGCGGAGGCGGTGGCGGATCTGCGCCACACGGAATCATACTCGCCGTCGTTGT 119
Query 177 TGCATTAGTGGTGCTTGTTCCGTTCTTCATCGGAGACAGTGGTGAGGCCATTACAGATGC 236
|||||| || ||||||||||| ||||||||||||||| ||||||| ||||||||||||||
Sbjct 120 TGCATTGGTAGTGCTTGTTCCCTTCTTCATCGGAGACGGTGGTGAAGCCATTACAGATGC 179
Query 237 GATCGCAGAGCTTCTTAGTCCGGTGGGACTTCTATTGCTTCCTATCATCCTCCTCCTCAC 296
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 180 GATCGCAGAGCTTCTTAGTCCGGTGGGACTTCTCTTACTTCCCATCATCCTCCTCCTCAC 239
Query 297 TATACAGTTTCTCTCGTCGGAACGTGGTTCCTTCGTGTCGGCCATTTTCTCCACCGGAGA 356
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 TATCCAGTTCCTCTCGTCGGAACGTGGTTCCTTCGTATCGGCCATTTTCTCCACCGGAGA 299
Query 357 ACCAGAATCGATTCACAGGGTTAGCGGATCTCCCGTGGGTGTTGCTCTCTTCCTCGTACT 416
||| |||||||||||| ||||||||||||||||||| ||||| ||| | |||||||||||
Sbjct 300 ACCCGAATCGATTCACCGGGTTAGCGGATCTCCCGTCGGTGTCGCTTTGTTCCTCGTACT 359
Query 417 GATCTTGTTCTTACTCTACTACCGCTTCTCTATCTTCGGCGGAGATGATGGTTCCGATGA 476
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 GATCTTGTTCTTACTCTACTACCGCTTCTCCATCTTCGGCGGAGATGATGGTTCCGATGA 419
Query 477 CTGATGCGACGTCGTCTTTTCAGATCTAGttttttccctctttttcttttttaggga-a- 534
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
Sbjct 420 CTGATGCGACGTCGTATTTTCAGATCTAGTTTTTTCCCTCTTTTTCTTTTTT-GGGAGAT 478
Query 535 aacaatatat-t-tat----gtcttt----attcgattttc-gtttttattttattttgt 583
|||||||||| | ||| |||||| |||||||||| ||||||||||||||||||
Sbjct 479 AACAATATATATATATTTATGTCTTTCTTTATTCGATTTTTTGTTTTTATTTTATTTTGT 538
Query 584 ttGACAGTTGAAAGTCAAACTATA 607
|||||||||| |||||||||||
Sbjct 539 --GACAGTTGAA-GTCAAACTATA 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26914779402
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5