BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G06910.1 Length=1793 Score E Sequences producing significant alignments: (Bits) Value Ahg928349 jgi|Araly1|928349|scaffold_300806.1 2078 0.0 Ahg497293 jgi|Araly1|497293|fgenesh2_kg.159__1__AT3G06910.1 970 0.0 > Ahg928349 jgi|Araly1|928349|scaffold_300806.1 Length=1448 Score = 2078 bits (1125), Expect = 0.0 Identities = 1345/1451 (93%), Gaps = 15/1451 (1%) Strand=Plus/Plus Query 101 GTTCCTACTGTTTCAGACCAATGGATATGG-AT--G--GTTACCACAAACGGAGCGCCGG 155 |||||| |||||||||||||||| |||| || | ||||||||||||| | |||| Sbjct 1 GTTCCTTGTGTTTCAGACCAATGG--ATGGCATGAGCAGTTACCACAAACGCAATTCCGG 58 Query 156 TTTAAACCCTTGTAAACACTCCGGTTTCTCACATTCATCAAGACCCATGGCTCCAGGAAT 215 |||||||||||||||| ||||| |||||||||||||||||||| | ||||||||||||| Sbjct 59 TTTAAACCCTTGTAAAAACTCCAGTTTCTCACATTCATCAAGAGTCGTGGCTCCAGGAAT 118 Query 216 TTACCGTTACCCAGAAGTGAAATCTTCGTTGCGGAGACAAGTTCATGCGCCTGT-GCGGA 274 ||||||||||||||||||||| ||| | |||||||||||||||||||||||| | ||||| Sbjct 119 TTACCGTTACCCAGAAGTGAAGTCTCCATTGCGGAGACAAGTTCATGCGCCT-TCGCGGA 177 Query 275 TACTCAATAGCGGTCGAGATCGTAGCACACGACAAGGTTCTGGTAATGTGTTGGGAACCT 334 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 178 TCCTCAAGAGCGGTCGAGATCGTAGCACACGACAAGGTTCTGGTAATGTGTTGGGAACTT 237 Query 335 TTCTCACAAGGAACAATGACATGTGGAAAAGAAATGCACTTGATTCGTCTTTACGCTATA 394 |||||||||||||| |||| |||| |||||||||||||||||||| | |||| ||||||| Sbjct 238 TTCTCACAAGGAACGATGATATGTTGAAAAGAAATGCACTTGATTTGCCTTTGCGCTATA 297 Query 395 GAACGGATAGAGAAGTAATTGATGTTGATGATGAGCTTGGAGATGTTGAAATGATATCTG 454 |||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| Sbjct 298 GAACGGATAGAGAAGTGGTTGATGTTGGTGATGAGCTTGGAGATGTGGAAATGATATCTG 357 Query 455 ATGATACAAGTAGGGAGGGTGTCGAAAACGTGGCTATGGAGGTGGACGAGGTGGAAGAGA 514 |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 358 ATGATACAAGTAGGGAGGGTCTCGGAAACGTGGCTATGGAGGTGGACGAGGTGGAAGAGA 417 Query 515 AGGCGGAGATGGGAAATGGATTGTTTTCTGAGGTTGCCAGTCTGAAAAATGGGAGCTTGA 574 |||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| | Sbjct 418 AGGCAGAGATGGGAAATGGATTGTTTTCTGAGGTTGTTAGTATGAAAAATGGGAGCTTAA 477 Query 575 GGGTGGGTGAATGTTCTAAAGCTAATAGTAGTTCACTCGTTGTGAATCGCCCTGTGACTG 634 |||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| | Sbjct 478 GGGTGGATGAATGTTCTCAAGATAATAGTAGTTCACTCGTTGTGAATCGCCCTGTGACCG 537 Query 635 ATGTCACAAGTTTTGAAGCATACAGAAAGGTTCTTGAGAGTGCTGTGAACCGGACTTCTA 694 ||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| | Sbjct 538 ATGTCACGAGTTTTGAAGCATACAGAAAGGTTCTCCAGAGTGCTGAGAACCGGACTTCGA 597 Query 695 AACTGAAAGACAGAGGCTTTGTTGAtttttttAAAGAGAGAGGTCGTGCTTTACTACGAA 754 ||||||||||||||||||||| |||| |||| ||||| ||||||||||||||||| |||| Sbjct 598 AACTGAAAGACAGAGGCTTTGGTGATATTTTGAAAGAAAGAGGTCGTGCTTTACTGCGAA 657 Query 755 G-C--TTGTC---TTCCTTTTGGAGACAAGATGAAGAACCAGTAGAGGTTGTACAACGTG 808 | | || || ||| ||||||| ||||||| ||||||||||||||| ||||||||||| Sbjct 658 GCCTGTTTTCTTTTTCTTTTTGGAAACAAGATAAAGAACCAGTAGAGGATGTACAACGTG 717 Query 809 AGGCATTTGTACCTCTTTCTAGAGAGGAGGAGACAGCAGTCAGGCGTGCATTCTCAGCTA 868 |||||||| || |||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 718 AGGCATTTCTAACTCTTTCTAGAGAGGAGGAGACAGCAGTCAACCGTGCATTCTCCGCTA 777 Query 869 ATGATTCAAACATCTTGGTTACTCATAAGAACTCAAATATTGATATTACCGGGAAAATCT 928 |||| || |||||||||||| | ||| |||| ||||||||||| ||||| ||||||||| Sbjct 778 ATGACTCGAACATCTTGGTTGCACATGAGAATTCAAATATTGAAATTACAGGGAAAATCC 837 Query 929 TGAGGTGCCTTAAACCAGGCAAATGGTTGAACGATGAGGTCATTAATCTTTATATGGTAT 988 | ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 838 TAAGGTGCCTTAAACCAGGTGAATGGTTGAACGATGAGGTCATTAATCTTTATCTGGTAT 897 Query 989 TGCTGAAAGAAAGGGAAGCTAGAGAACCAAAGAAGTTTCTTAAATGTCATTTTTTCAATA 1048 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 TGCTGAAAGAAAGGGAAGCTAGAGAACCAAAGAAGTTTCTTAAATGTCATTTTTTCAATA 957 Query 1049 CATTTTTCTTCACTAAGTTAGTTAATTCGGCGACTGGATACAACTATGGTGCAGTGAGAA 1108 |||||||||||||||||||| ||||||||| ||||||||||||||| | ||||| |||| Sbjct 958 CATTTTTCTTCACTAAGTTATTTAATTCGGGGACTGGATACAACTACAGCGCAGTCAGAA 1017 Query 1109 GATGGACTTCAATGAAGAGGTTGGGCTACCATCTCAAAGACTGTGACAAGATATTTATCC 1168 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1018 GATGGACATCAATGAAGAGGTTGGGCTATCATCTCAAAGACTGTGACAAGATATTTATCC 1077 Query 1169 CTATCCATATGAACATCCACTGGACTTTGGCTGTAATTAATATAAAGGACCAGAAATTCC 1228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 CTATCCATATGAACATCCACTGGACTTTGGCTGTAATTAATATAAAGGACCAGAAATTCC 1137 Query 1229 AGTATCTTGACTCTTTCAAAGGAAGGGAGCCTAAAATCCTCGATGCACTGGCTAGATACT 1288 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1138 AGTATCTTGACTCATTCAAAGGAAGGGAGCCTAAAATTCTCGATGCACTGGCTAGATACT 1197 Query 1289 TTGTCGATGAAGTGAGGGATAAGAGTGAAGTAGACCTTGATGTAAGTCGATGGAGACAAG 1348 ||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||| Sbjct 1198 TTGTCGATGAAGTGAGGGACAAGAATGAAGTAGACCTTGATGTAAGTCGATGGGGACAAG 1257 Query 1349 AATTTGTCCAGGACCTTCCAATGCAGAGAAATGGATTCGATTGTGGAATGTTTATGGTGA 1408 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1258 AATTTGTCCAGGACCTTCCGATGCAGAGAAATGGATTCGATTGTGGAATGTTTATGGTGA 1317 Query 1409 AATACATCGACTTCTATAGCAGAGGTCTGGATCTTTGTTTCACTCAGGAACAAATGCCAT 1468 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1318 AATACATCGACTTCTACAGCAGAGGTTTGGATCTTTGTTTCACTCAGGAACAAATGCCAT 1377 Query 1469 ATTTCCGGGCTAGGACAGCAAAGGAGATTCTGCAACTGAAAGCCGAGTGATGCCAGCATA 1528 ||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| | Sbjct 1378 ATTTCCGGGATAGGACAGCGAAGGAGATTCTGCAACTGAAAGCCGAGTGATGTCAGCAAA 1437 Query 1529 ATAAGGAAACT 1539 ||||||||||| Sbjct 1438 ATAAGGAAACT 1448 > Ahg497293 jgi|Araly1|497293|fgenesh2_kg.159__1__AT3G06910.1 Length=1612 Score = 970 bits (525), Expect = 0.0 Identities = 664/729 (91%), Gaps = 18/729 (2%) Strand=Plus/Plus Query 14 AAAACCAATCTAGGGTTTTGAACTCTGAATTGGGGGATTTTGACCTTTCAGTTTTGTGGG 73 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAATCAATCTAGGGTTTTGAACTCTGAATTGGGGGATTTTGACCTTTCAGTTTTGTGGG 60 Query 74 ATCAAATTTTGAATTTCGAGGGTTATGGTTCCTACTGTTTCAGACCAATGGAT---ATG- 129 ||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 61 ATCGAATTTTGAATTTCGAGGGTTATGGTTCCTTGTGTTTCAGACCAATGGATGGCATGA 120 Query 130 G-ATGGTTACCACAAACGGAGCGCCGGTTTAAACCCTTGTAAACACTCCGGTTTCTCACA 188 | | | |||||||||||| | |||||||||||||||||||| ||||| |||||||||| Sbjct 121 GCA-G-TTACCACAAACGCAATTCCGGTTTAAACCCTTGTAAAAACTCCAGTTTCTCACA 178 Query 189 TTCATCAAGACCCATGGCTCCAGGAATTTACCGTTACCCAGAAGTGAAATCTTCGTTGCG 248 |||||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||||| Sbjct 179 TTCATCAAGAACCATGGCTCCAGGAATTTACCGTTACCCAGAAGTGAAGTCTCCATTGCG 238 Query 249 GAGACAAGTTCATGCGCCTGT-GCGGATACTCAATAGCGGTCGAGATCGTAGCACACGAC 307 ||||||||||||||||||| | |||||| ||||| ||||||||||||||||||||||||| Sbjct 239 GAGACAAGTTCATGCGCCT-TCGCGGATCCTCAAGAGCGGTCGAGATCGTAGCACACGAC 297 Query 308 AAGGTTCTGGTAATGTGTTGGGAACCTTTCTCACAAGGAACAATGACATGTGGAAAAGAA 367 ||||||||||||||||||||||||| ||||||||||||||| |||| |||| |||||||| Sbjct 298 AAGGTTCTGGTAATGTGTTGGGAACTTTTCTCACAAGGAACGATGATATGTTGAAAAGAA 357 Query 368 ATGCACTTGATTCGTCTTTACGCTATAGAACGGATAGAGAAGTAATTGATGTTGATGATG 427 |||||||||||| | |||| ||||||||||||||||||||||| ||||||||| ||||| Sbjct 358 ATGCACTTGATTTGCCTTTGCGCTATAGAACGGATAGAGAAGTGGTTGATGTTGGTGATG 417 Query 428 AGCTTGGAGATGTTGAAATGATATCTGATGATACAAGTAGGGAGGGTGTCGAAAACGTGG 487 ||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 418 AGCTTGGAGATGTGGAAATGATATCTGATGATACAAGTAGGGAGGGTCTCGGAAACGTGG 477 Query 488 CTATGGAGGTGGACGAGGTGGAAGAGAAGGCGGAGATGGGAAATGGATTGTTTTCTGAGG 547 ||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 478 CTATGGAGGTGGACGAGGTGGCAGAGA---------TGGGAAATGGATTGTTTTCTGAGG 528 Query 548 TTGCCAGTCTGAAAAATGGGAGCTTGAGGGTGGGTGAATGTTCTAAAGCTAATAGTAGTT 607 ||| ||| |||||||||||||||| ||||||| |||||||||| ||| ||||||||||| Sbjct 529 TTGTTAGTATGAAAAATGGGAGCTTAAGGGTGGATGAATGTTCTCAAGATAATAGTAGTT 588 Query 608 CACTCGTTGTGAATCGCCCTGTGACTGATGTCACAAGTTTTGAAGCATACAGAAAGGTTC 667 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 589 CACTCGTTGTGAATCGCCCTGTGACCGATGTCACGAGTTTTGAAGCATACAGAAAGGTTC 648 Query 668 TTGAGAGTGCTGTGAACCGGACTTCTAAACTGAAAGACAGAGGCTTTGTTGAtttttttA 727 | ||||||||| |||||||||||| |||||||||||||||||||||| |||| |||| | Sbjct 649 TCCAGAGTGCTGAGAACCGGACTTCGAAACTGAAAGACAGAGGCTTTGGTGATATTTTGA 708 Query 728 AAGAGAGAG 736 |||| |||| Sbjct 709 AAGAAAGAG 717 Score = 726 bits (393), Expect = 0.0 Identities = 542/608 (89%), Gaps = 33/608 (5%) Strand=Plus/Plus Query 1155 CAAGATATTTATCCCTATCCATATGAACATCCACTGGACTTTGGCTGTAATTAATATAAA 1214 ||| |||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 1035 CAA-ATATTTGTCCCTATCCATATGAACATCCAATGGACTTTGGCTGTGATTAATATAAA 1093 Query 1215 GGACCAGAAATTCCAGTATCTTGACTCTTTCAAAGGAAGGGAGCCTAAAATCCTCGATGC 1274 ||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1094 GGACCGGAAATTCCAGTATCTCGACTCATTCAAAGGAAGGGAGCCTAAAATCCTCGATGC 1153 Query 1275 ACTGGCTAGATACTTTGTCGATGAAGTGAGGGATAAGAGTGAAGTAGACCTTGATGTAAG 1334 ||||| ||| || || | || | | | ||| | | | | | |||| || Sbjct 1154 ACTGG-TAG-TA--TT-T-GA-G--CT-A--GAT---ACT----TTG---TCGATG-AA- 1189 Query 1335 TCGATGGAGACAAGAATTTGTCCAGGACCTTCCAATGCAGAGAAATGGATTCGATTGTGG 1394 ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 1190 TCGATGGAGACAAGAATTTGTCCAGGACCTTCCGATGCAGAGAATTGGATTCGATTGTGG 1249 Query 1395 AATGTTTATGGTGAAATACATCGACTTCTATAGCAGAGGTCTGGATCTTTGTTTCACTCA 1454 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1250 AATGTTTATGGTAAAATACATCGACTTCTACAGCAGAGGTCTGGATCTTTGTTTTGCTCA 1309 Query 1455 GGAACAAATGCCATATTTCCGGGCTAGGACAGCAAAGGAGATTCTGCAACTGAAAGCCGA 1514 ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| Sbjct 1310 GGAACAAATGCCATATTTCCGGGATAGGACAGCGAAGGAGA---TGCAACTGAAAGCCGA 1366 Query 1515 GTGATGCCAGCATAATAAGGAAACTCTTAAAGAATAGTTTTGAA-GTTCTTCTTCTTCTT 1573 |||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1367 GTGATGTCAGCATAATAAGGAAACTCTTAAAGAATAGTTTTGAAAGGTCTTCTTCTTCTT 1426 Query 1574 CATGTAGATAGTATTTAGCAAGTTAGATGCACACTTTACGTGTTTGATAATTTGATGTAC 1633 |||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1427 CATGTAGATAGTGTTGAGAAAGTTAGATGCACACTT-ACGTGTTTGATAATTTGATGTAC 1485 Query 1634 ATAGAAAAGGGTAACAATGTGGTTCTCTGATGATCAGGCTTGATAGTGAAATTCGAATTG 1693 || | |||| |||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 1486 ATGGCAAAGTGTAACAATGTGGTTCTCTGATGATGAGGCTTGATAGTGAAACTCGAATTA 1545 Query 1694 TTGTTTAAAGATTCTAGTTT-CA-TATCAGATACTCTGATTTTGAATTCTGGTATTATTT 1751 |||||||||||||||| ||| || |||||||||||||||||||| ||| || |||||| | Sbjct 1546 TTGTTTAAAGATTCTA-TTTACACTATCAGATACTCTGATTTTGGATTTTGATATTATAT 1604 Query 1752 TTGTACTT 1759 |||||||| Sbjct 1605 TTGTACTT 1612 Score = 364 bits (197), Expect = 1e-99 Identities = 224/237 (95%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 829 AGAGAGGAGGAGACAGCAGTCAGGCGTGCATTCTCAGCTAATGATTCAAACATCTTGGTT 888 |||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct 714 AGAGAGGAGGAGACAGCAGTCAACCGTGCATTCTCCGCTAATGACTCAAACATCTTGGTT 773 Query 889 ACTCATAAGAACTCAAATATTGATATTACCGGGAAAATCTTGAGGTGCCTTAAACCAGGC 948 || |||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||| Sbjct 774 ACACATAAGAACTCAAATATTGACATTACAGGGAAAATCCTAAGGTGCCTTAAACCAGGT 833 Query 949 AAATGGTTGAACGATGAGGTCATTAATCTTTATATGGTATTGCTGAAAGAAAGGGAAGCT 1008 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 834 GAATGGTTGAACGATGAGGTCATTAATCTTTATCTGGTATTGCTGAAAGAAAGGGAAGCT 893 Query 1009 AGAGAACCAAAGAAGTTTCTTAAATGTCATTTTTTCAATACATTTTTCTTCACTAAG 1065 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 894 AGAGAACCAAAGAAGTTTCTTAAATGTCATTTTT-CAATACATTTTTCTTCACTAAG 949 Score = 95.3 bits (51), Expect = 1e-18 Identities = 57/60 (95%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 1099 GCAGTGAGAAGATGGACTTCAATGAAGAGGTTGGGCTACCATCTCAAAGACTGTGACAAG 1158 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 951 GCAGTCAGAAGATGGACATCAATGAAGAGGTTGGGCTACCATCTCAAAGACTGTGAAAAG 1010 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67305462915 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5