BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06910.1
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928349 jgi|Araly1|928349|scaffold_300806.1 2078 0.0
Ahg497293 jgi|Araly1|497293|fgenesh2_kg.159__1__AT3G06910.1 970 0.0
> Ahg928349 jgi|Araly1|928349|scaffold_300806.1
Length=1448
Score = 2078 bits (1125), Expect = 0.0
Identities = 1345/1451 (93%), Gaps = 15/1451 (1%)
Strand=Plus/Plus
Query 101 GTTCCTACTGTTTCAGACCAATGGATATGG-AT--G--GTTACCACAAACGGAGCGCCGG 155
|||||| |||||||||||||||| |||| || | ||||||||||||| | ||||
Sbjct 1 GTTCCTTGTGTTTCAGACCAATGG--ATGGCATGAGCAGTTACCACAAACGCAATTCCGG 58
Query 156 TTTAAACCCTTGTAAACACTCCGGTTTCTCACATTCATCAAGACCCATGGCTCCAGGAAT 215
|||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||||
Sbjct 59 TTTAAACCCTTGTAAAAACTCCAGTTTCTCACATTCATCAAGAGTCGTGGCTCCAGGAAT 118
Query 216 TTACCGTTACCCAGAAGTGAAATCTTCGTTGCGGAGACAAGTTCATGCGCCTGT-GCGGA 274
||||||||||||||||||||| ||| | |||||||||||||||||||||||| | |||||
Sbjct 119 TTACCGTTACCCAGAAGTGAAGTCTCCATTGCGGAGACAAGTTCATGCGCCT-TCGCGGA 177
Query 275 TACTCAATAGCGGTCGAGATCGTAGCACACGACAAGGTTCTGGTAATGTGTTGGGAACCT 334
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 178 TCCTCAAGAGCGGTCGAGATCGTAGCACACGACAAGGTTCTGGTAATGTGTTGGGAACTT 237
Query 335 TTCTCACAAGGAACAATGACATGTGGAAAAGAAATGCACTTGATTCGTCTTTACGCTATA 394
|||||||||||||| |||| |||| |||||||||||||||||||| | |||| |||||||
Sbjct 238 TTCTCACAAGGAACGATGATATGTTGAAAAGAAATGCACTTGATTTGCCTTTGCGCTATA 297
Query 395 GAACGGATAGAGAAGTAATTGATGTTGATGATGAGCTTGGAGATGTTGAAATGATATCTG 454
|||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||
Sbjct 298 GAACGGATAGAGAAGTGGTTGATGTTGGTGATGAGCTTGGAGATGTGGAAATGATATCTG 357
Query 455 ATGATACAAGTAGGGAGGGTGTCGAAAACGTGGCTATGGAGGTGGACGAGGTGGAAGAGA 514
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 358 ATGATACAAGTAGGGAGGGTCTCGGAAACGTGGCTATGGAGGTGGACGAGGTGGAAGAGA 417
Query 515 AGGCGGAGATGGGAAATGGATTGTTTTCTGAGGTTGCCAGTCTGAAAAATGGGAGCTTGA 574
|||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 418 AGGCAGAGATGGGAAATGGATTGTTTTCTGAGGTTGTTAGTATGAAAAATGGGAGCTTAA 477
Query 575 GGGTGGGTGAATGTTCTAAAGCTAATAGTAGTTCACTCGTTGTGAATCGCCCTGTGACTG 634
|||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| |
Sbjct 478 GGGTGGATGAATGTTCTCAAGATAATAGTAGTTCACTCGTTGTGAATCGCCCTGTGACCG 537
Query 635 ATGTCACAAGTTTTGAAGCATACAGAAAGGTTCTTGAGAGTGCTGTGAACCGGACTTCTA 694
||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| |
Sbjct 538 ATGTCACGAGTTTTGAAGCATACAGAAAGGTTCTCCAGAGTGCTGAGAACCGGACTTCGA 597
Query 695 AACTGAAAGACAGAGGCTTTGTTGAtttttttAAAGAGAGAGGTCGTGCTTTACTACGAA 754
||||||||||||||||||||| |||| |||| ||||| ||||||||||||||||| ||||
Sbjct 598 AACTGAAAGACAGAGGCTTTGGTGATATTTTGAAAGAAAGAGGTCGTGCTTTACTGCGAA 657
Query 755 G-C--TTGTC---TTCCTTTTGGAGACAAGATGAAGAACCAGTAGAGGTTGTACAACGTG 808
| | || || ||| ||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct 658 GCCTGTTTTCTTTTTCTTTTTGGAAACAAGATAAAGAACCAGTAGAGGATGTACAACGTG 717
Query 809 AGGCATTTGTACCTCTTTCTAGAGAGGAGGAGACAGCAGTCAGGCGTGCATTCTCAGCTA 868
|||||||| || |||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 718 AGGCATTTCTAACTCTTTCTAGAGAGGAGGAGACAGCAGTCAACCGTGCATTCTCCGCTA 777
Query 869 ATGATTCAAACATCTTGGTTACTCATAAGAACTCAAATATTGATATTACCGGGAAAATCT 928
|||| || |||||||||||| | ||| |||| ||||||||||| ||||| |||||||||
Sbjct 778 ATGACTCGAACATCTTGGTTGCACATGAGAATTCAAATATTGAAATTACAGGGAAAATCC 837
Query 929 TGAGGTGCCTTAAACCAGGCAAATGGTTGAACGATGAGGTCATTAATCTTTATATGGTAT 988
| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 838 TAAGGTGCCTTAAACCAGGTGAATGGTTGAACGATGAGGTCATTAATCTTTATCTGGTAT 897
Query 989 TGCTGAAAGAAAGGGAAGCTAGAGAACCAAAGAAGTTTCTTAAATGTCATTTTTTCAATA 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TGCTGAAAGAAAGGGAAGCTAGAGAACCAAAGAAGTTTCTTAAATGTCATTTTTTCAATA 957
Query 1049 CATTTTTCTTCACTAAGTTAGTTAATTCGGCGACTGGATACAACTATGGTGCAGTGAGAA 1108
|||||||||||||||||||| ||||||||| ||||||||||||||| | ||||| ||||
Sbjct 958 CATTTTTCTTCACTAAGTTATTTAATTCGGGGACTGGATACAACTACAGCGCAGTCAGAA 1017
Query 1109 GATGGACTTCAATGAAGAGGTTGGGCTACCATCTCAAAGACTGTGACAAGATATTTATCC 1168
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1018 GATGGACATCAATGAAGAGGTTGGGCTATCATCTCAAAGACTGTGACAAGATATTTATCC 1077
Query 1169 CTATCCATATGAACATCCACTGGACTTTGGCTGTAATTAATATAAAGGACCAGAAATTCC 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CTATCCATATGAACATCCACTGGACTTTGGCTGTAATTAATATAAAGGACCAGAAATTCC 1137
Query 1229 AGTATCTTGACTCTTTCAAAGGAAGGGAGCCTAAAATCCTCGATGCACTGGCTAGATACT 1288
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1138 AGTATCTTGACTCATTCAAAGGAAGGGAGCCTAAAATTCTCGATGCACTGGCTAGATACT 1197
Query 1289 TTGTCGATGAAGTGAGGGATAAGAGTGAAGTAGACCTTGATGTAAGTCGATGGAGACAAG 1348
||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 1198 TTGTCGATGAAGTGAGGGACAAGAATGAAGTAGACCTTGATGTAAGTCGATGGGGACAAG 1257
Query 1349 AATTTGTCCAGGACCTTCCAATGCAGAGAAATGGATTCGATTGTGGAATGTTTATGGTGA 1408
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AATTTGTCCAGGACCTTCCGATGCAGAGAAATGGATTCGATTGTGGAATGTTTATGGTGA 1317
Query 1409 AATACATCGACTTCTATAGCAGAGGTCTGGATCTTTGTTTCACTCAGGAACAAATGCCAT 1468
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1318 AATACATCGACTTCTACAGCAGAGGTTTGGATCTTTGTTTCACTCAGGAACAAATGCCAT 1377
Query 1469 ATTTCCGGGCTAGGACAGCAAAGGAGATTCTGCAACTGAAAGCCGAGTGATGCCAGCATA 1528
||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 1378 ATTTCCGGGATAGGACAGCGAAGGAGATTCTGCAACTGAAAGCCGAGTGATGTCAGCAAA 1437
Query 1529 ATAAGGAAACT 1539
|||||||||||
Sbjct 1438 ATAAGGAAACT 1448
> Ahg497293 jgi|Araly1|497293|fgenesh2_kg.159__1__AT3G06910.1
Length=1612
Score = 970 bits (525), Expect = 0.0
Identities = 664/729 (91%), Gaps = 18/729 (2%)
Strand=Plus/Plus
Query 14 AAAACCAATCTAGGGTTTTGAACTCTGAATTGGGGGATTTTGACCTTTCAGTTTTGTGGG 73
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAATCAATCTAGGGTTTTGAACTCTGAATTGGGGGATTTTGACCTTTCAGTTTTGTGGG 60
Query 74 ATCAAATTTTGAATTTCGAGGGTTATGGTTCCTACTGTTTCAGACCAATGGAT---ATG- 129
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 61 ATCGAATTTTGAATTTCGAGGGTTATGGTTCCTTGTGTTTCAGACCAATGGATGGCATGA 120
Query 130 G-ATGGTTACCACAAACGGAGCGCCGGTTTAAACCCTTGTAAACACTCCGGTTTCTCACA 188
| | | |||||||||||| | |||||||||||||||||||| ||||| ||||||||||
Sbjct 121 GCA-G-TTACCACAAACGCAATTCCGGTTTAAACCCTTGTAAAAACTCCAGTTTCTCACA 178
Query 189 TTCATCAAGACCCATGGCTCCAGGAATTTACCGTTACCCAGAAGTGAAATCTTCGTTGCG 248
|||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 179 TTCATCAAGAACCATGGCTCCAGGAATTTACCGTTACCCAGAAGTGAAGTCTCCATTGCG 238
Query 249 GAGACAAGTTCATGCGCCTGT-GCGGATACTCAATAGCGGTCGAGATCGTAGCACACGAC 307
||||||||||||||||||| | |||||| ||||| |||||||||||||||||||||||||
Sbjct 239 GAGACAAGTTCATGCGCCT-TCGCGGATCCTCAAGAGCGGTCGAGATCGTAGCACACGAC 297
Query 308 AAGGTTCTGGTAATGTGTTGGGAACCTTTCTCACAAGGAACAATGACATGTGGAAAAGAA 367
||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||
Sbjct 298 AAGGTTCTGGTAATGTGTTGGGAACTTTTCTCACAAGGAACGATGATATGTTGAAAAGAA 357
Query 368 ATGCACTTGATTCGTCTTTACGCTATAGAACGGATAGAGAAGTAATTGATGTTGATGATG 427
|||||||||||| | |||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 358 ATGCACTTGATTTGCCTTTGCGCTATAGAACGGATAGAGAAGTGGTTGATGTTGGTGATG 417
Query 428 AGCTTGGAGATGTTGAAATGATATCTGATGATACAAGTAGGGAGGGTGTCGAAAACGTGG 487
||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 418 AGCTTGGAGATGTGGAAATGATATCTGATGATACAAGTAGGGAGGGTCTCGGAAACGTGG 477
Query 488 CTATGGAGGTGGACGAGGTGGAAGAGAAGGCGGAGATGGGAAATGGATTGTTTTCTGAGG 547
||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 478 CTATGGAGGTGGACGAGGTGGCAGAGA---------TGGGAAATGGATTGTTTTCTGAGG 528
Query 548 TTGCCAGTCTGAAAAATGGGAGCTTGAGGGTGGGTGAATGTTCTAAAGCTAATAGTAGTT 607
||| ||| |||||||||||||||| ||||||| |||||||||| ||| |||||||||||
Sbjct 529 TTGTTAGTATGAAAAATGGGAGCTTAAGGGTGGATGAATGTTCTCAAGATAATAGTAGTT 588
Query 608 CACTCGTTGTGAATCGCCCTGTGACTGATGTCACAAGTTTTGAAGCATACAGAAAGGTTC 667
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 589 CACTCGTTGTGAATCGCCCTGTGACCGATGTCACGAGTTTTGAAGCATACAGAAAGGTTC 648
Query 668 TTGAGAGTGCTGTGAACCGGACTTCTAAACTGAAAGACAGAGGCTTTGTTGAtttttttA 727
| ||||||||| |||||||||||| |||||||||||||||||||||| |||| |||| |
Sbjct 649 TCCAGAGTGCTGAGAACCGGACTTCGAAACTGAAAGACAGAGGCTTTGGTGATATTTTGA 708
Query 728 AAGAGAGAG 736
|||| ||||
Sbjct 709 AAGAAAGAG 717
Score = 726 bits (393), Expect = 0.0
Identities = 542/608 (89%), Gaps = 33/608 (5%)
Strand=Plus/Plus
Query 1155 CAAGATATTTATCCCTATCCATATGAACATCCACTGGACTTTGGCTGTAATTAATATAAA 1214
||| |||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1035 CAA-ATATTTGTCCCTATCCATATGAACATCCAATGGACTTTGGCTGTGATTAATATAAA 1093
Query 1215 GGACCAGAAATTCCAGTATCTTGACTCTTTCAAAGGAAGGGAGCCTAAAATCCTCGATGC 1274
||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1094 GGACCGGAAATTCCAGTATCTCGACTCATTCAAAGGAAGGGAGCCTAAAATCCTCGATGC 1153
Query 1275 ACTGGCTAGATACTTTGTCGATGAAGTGAGGGATAAGAGTGAAGTAGACCTTGATGTAAG 1334
||||| ||| || || | || | | | ||| | | | | | |||| ||
Sbjct 1154 ACTGG-TAG-TA--TT-T-GA-G--CT-A--GAT---ACT----TTG---TCGATG-AA- 1189
Query 1335 TCGATGGAGACAAGAATTTGTCCAGGACCTTCCAATGCAGAGAAATGGATTCGATTGTGG 1394
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1190 TCGATGGAGACAAGAATTTGTCCAGGACCTTCCGATGCAGAGAATTGGATTCGATTGTGG 1249
Query 1395 AATGTTTATGGTGAAATACATCGACTTCTATAGCAGAGGTCTGGATCTTTGTTTCACTCA 1454
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1250 AATGTTTATGGTAAAATACATCGACTTCTACAGCAGAGGTCTGGATCTTTGTTTTGCTCA 1309
Query 1455 GGAACAAATGCCATATTTCCGGGCTAGGACAGCAAAGGAGATTCTGCAACTGAAAGCCGA 1514
||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 1310 GGAACAAATGCCATATTTCCGGGATAGGACAGCGAAGGAGA---TGCAACTGAAAGCCGA 1366
Query 1515 GTGATGCCAGCATAATAAGGAAACTCTTAAAGAATAGTTTTGAA-GTTCTTCTTCTTCTT 1573
|||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1367 GTGATGTCAGCATAATAAGGAAACTCTTAAAGAATAGTTTTGAAAGGTCTTCTTCTTCTT 1426
Query 1574 CATGTAGATAGTATTTAGCAAGTTAGATGCACACTTTACGTGTTTGATAATTTGATGTAC 1633
|||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1427 CATGTAGATAGTGTTGAGAAAGTTAGATGCACACTT-ACGTGTTTGATAATTTGATGTAC 1485
Query 1634 ATAGAAAAGGGTAACAATGTGGTTCTCTGATGATCAGGCTTGATAGTGAAATTCGAATTG 1693
|| | |||| |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1486 ATGGCAAAGTGTAACAATGTGGTTCTCTGATGATGAGGCTTGATAGTGAAACTCGAATTA 1545
Query 1694 TTGTTTAAAGATTCTAGTTT-CA-TATCAGATACTCTGATTTTGAATTCTGGTATTATTT 1751
|||||||||||||||| ||| || |||||||||||||||||||| ||| || |||||| |
Sbjct 1546 TTGTTTAAAGATTCTA-TTTACACTATCAGATACTCTGATTTTGGATTTTGATATTATAT 1604
Query 1752 TTGTACTT 1759
||||||||
Sbjct 1605 TTGTACTT 1612
Score = 364 bits (197), Expect = 1e-99
Identities = 224/237 (95%), Gaps = 1/237 (0%)
Strand=Plus/Plus
Query 829 AGAGAGGAGGAGACAGCAGTCAGGCGTGCATTCTCAGCTAATGATTCAAACATCTTGGTT 888
|||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 714 AGAGAGGAGGAGACAGCAGTCAACCGTGCATTCTCCGCTAATGACTCAAACATCTTGGTT 773
Query 889 ACTCATAAGAACTCAAATATTGATATTACCGGGAAAATCTTGAGGTGCCTTAAACCAGGC 948
|| |||||||||||||||||||| ||||| ||||||||| | |||||||||||||||||
Sbjct 774 ACACATAAGAACTCAAATATTGACATTACAGGGAAAATCCTAAGGTGCCTTAAACCAGGT 833
Query 949 AAATGGTTGAACGATGAGGTCATTAATCTTTATATGGTATTGCTGAAAGAAAGGGAAGCT 1008
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 834 GAATGGTTGAACGATGAGGTCATTAATCTTTATCTGGTATTGCTGAAAGAAAGGGAAGCT 893
Query 1009 AGAGAACCAAAGAAGTTTCTTAAATGTCATTTTTTCAATACATTTTTCTTCACTAAG 1065
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 894 AGAGAACCAAAGAAGTTTCTTAAATGTCATTTTT-CAATACATTTTTCTTCACTAAG 949
Score = 95.3 bits (51), Expect = 1e-18
Identities = 57/60 (95%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1099 GCAGTGAGAAGATGGACTTCAATGAAGAGGTTGGGCTACCATCTCAAAGACTGTGACAAG 1158
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 951 GCAGTCAGAAGATGGACATCAATGAAGAGGTTGGGCTACCATCTCAAAGACTGTGAAAAG 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5