BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06930.2
Length=2025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478013 jgi|Araly1|478013|fgenesh2_kg.3__714__AT3G06930.1 3029 0.0
Ahg494964 jgi|Araly1|494964|fgenesh2_kg.8__780__AT5G49020.1 1439 0.0
> Ahg478013 jgi|Araly1|478013|fgenesh2_kg.3__714__AT3G06930.1
Length=1930
Score = 3029 bits (1640), Expect = 0.0
Identities = 1839/1932 (95%), Gaps = 26/1932 (1%)
Strand=Plus/Plus
Query 64 ATCTGTACATTCGCATCGTTTTGTAAAAATGGAGGTATCTTCTGTGAAAAAGCTTGAGCA 123
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 24 ATCTGTACATTCGCAGCGTTTTGTAAAAATGGAGGTGTCTTCTGTGAAAAAGCTTGAGCA 83
Query 124 GCTGGAGTACTCTTTAGAGTCAGTCACTGATCTCTCTTCGTCTTCCGTTTCGTCGTCCTC 183
|||||||| ||||||||| || ||||||||||||||| | ||||||| |||||||||| |
Sbjct 84 GCTGGAGTTCTCTTTAGACTCGGTCACTGATCTCTCTGCCTCTTCCGCTTCGTCGTCCAC 143
Query 184 TCCAGCTGTAGCTACGTTTTCCTACGTTGATGGAGTCACGGAGCTCCGATTTCTGCAATC 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 144 TCCAGCTGTAGCTACGTTTTCCTGCGTTGATGGAGTCACGGAGCTCCGATTTCTGCAATC 203
Query 244 GGATTCGACCCATTGTTTCAATTTTGATCTCGCTTCCGCTCAGTTATTCAAGTTGGGGCC 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 204 GGATTCGACCCATTGTTTCAATTTTGATCTCGCTACCGCTCAGTTATTCAAGTTGGGGCC 263
Query 304 AGTCCATTTCATCTGTGTATCTGATGGTTCAAGTTCTTCAGAGGAGAAATCATTCTCCAA 363
||| |||||||||||||||||||| | || |||||||||||||||||||||| |
Sbjct 264 AGTGCATTTCATCTGTGTATCTGA----T--AG---TTCAGAGGAGAAATCATTCTCCCA 314
Query 364 AGGAGTCAATATAAAATTCAAAAATGAGAAGGATAGCAAGGATTTTTGTGAGTCCTTTGA 423
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 315 AGGAGTCAATATAAAATTTAAAAATGATAAGGATAGCAAGGATTTTTGTGAGTCCTTTCA 374
Query 424 AGAGTGGAGAAATGATTCTGTTGTTCAAGGATCATCCTTGCAAAATGGAACAGTTTCAGC 483
|||||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 375 AGAGTGGAGAAAGGATGCTGTTGTTCAAGGATCATCCTTTCAAAATGGAACGGTTTCAGC 434
Query 484 TAATAAAAGCAAGTTCGACAATAAGATAGAGGCGTCATCGGCAAAAATGTATTTTCATTA 543
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 435 TAATAAAAGCAAGTTCGACACTAAGATAGAGGCGTCATCGGCCAAAATGTATTTCCATTA 494
Query 544 TTATGGACAACTTCTACATCAGCAAAATATGCTACAAGATTATGTGCGGACAGGTACGTA 603
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 495 TTATGGACAACTTCTACATCAACAAAATATGCTACAAGATTATGTGAGGACAGGTACATA 554
Query 604 CTATGCCGCAGTCATGGAGAATCATTCAGATTTTGCTGGTCGTGTTGTGGTCGATGTGGG 663
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 555 TTATGCCGCAGTCATGGAGAATCGTTCAGATTTTGCTGGTCGTGTTGTGGTCGATGTGGG 614
Query 664 TGCTGGGAGTGGCATTTTGTCAATGTTTGCGGCCCAGGCTGGTGCCAAACATGTGTATGC 723
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 615 TGCTGGGAGTGGCATTTTGTCAATGTTTGCTGCCCAGGCTGGTGCCAAACATGTGTATGC 674
Query 724 GGTTGAAGCATCAGAAATGGCTGAGTATGCTCGTAAGCTGATTGCTGGAAACCCATTATT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GGTTGAAGCATCAGAAATGGCTGAGTATGCTCGTAAGCTGATTGCTGGAAACCCATTATT 734
Query 784 CGCTGACCGAATCACAGTCATCAAGGGTAAAGTTGAGGATATCGAGTTGCCTGAGAAAGC 843
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CGCTGAACGGATCACAGTCATCAAGGGTAAAGTTGAGGATATCGAGTTGCCTGAGAAAGC 794
Query 844 AGATATTTTGATTTCTGAACCGATGGGCACCTTATTGGTCAACGAGAGAATGTTAGAATC 903
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 AGATATTTTGATCTCTGAACCGATGGGCACCTTATTGGTCAACGAGAGAATGTTAGAATC 854
Query 904 GTATGTAATTGCTAGGGATCGTTTTATGACTCCAAAAGGCAAAATGTTTCCCACTGTCGG 963
|||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||
Sbjct 855 GTATGTAATTGCTAGGGATCGTTTTATGTCTTCAAAGGGCAAAATGTTTCCCACTGTCGG 914
Query 964 AAGGATTCACATGGCACCTTTTTCTGATGAATTCTTATTTATTGAGATGGCAAATAAGGC 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AAGGATTCACATGGCACCTTTTTCTGATGAATTCTTATTTATTGAGATGGCAAATAAGGC 974
Query 1024 TATGTTTTGGCAACAGCAGAACTATTATGGAGTTGATCTGACACCTCTATATGGATCAGC 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 TATGTTTTGGCAACAGCAGAACTATTATGGAGTTGATCTGACACCTCTATATGGATCAGC 1034
Query 1084 GCACCAAGGTTATTTTTCTCAGCCCGTGGTTGATGCATTTGATCCGAGATTATTAGTGGC 1143
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1035 ACACCAAGGTTATTTTTCTCAGCCCGTTGTTGATGCATTTGATCCGAGATTATTAGTGGC 1094
Query 1144 TTCTCCGATGTTCCACATGATAGATTTCACTCAAATGAAGGAAGAAGATTTTTACGAGAT 1203
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 TTCTCCGATGTTTCACATGATAGATTTCACTCAAATGAAGGAAGAAGATTTTTACGAGAT 1154
Query 1204 TGATATCCCGTTGAAGTTCACTGCTTCCATGTGCACCAGAATGCATGGACTTGCCTGCTG 1263
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1155 TGATATCCCGTTGAAGTTCACTGCTTCCATGTGCACCAGAGTGCATGGACTTGCCTGCTG 1214
Query 1264 GTTTGACGTTCTCTTTGACGGGAGCACGGTCCAAAGATGGCTCACAACTGCTCCCGGTGC 1323
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1215 GTTCGACGTTCTCTTCGACGGGAGCACGGTCCAAAGATGGCTCACAACTGCTCCTGGTGC 1274
Query 1324 ACCTACAACGCATTGGTACCAAATCAGATGTGTTCTCTCGCAGCCTATTTACGTAATGGC 1383
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1275 ACCTACAACGCATTGGTACCAAATCAGATATGTTCTCTCGCAGCCTATTTACGTAATGGC 1334
Query 1384 AGGTCAAGAGATCACTGGTAGACTTCATTTGATAGCCCACAGTGCTCAGAGTTACACCAT 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 AGGTCAAGAGATCACTGGTAGACTTCATTTGATAGCCCACAGTGCTCAGAGTTACACCAT 1394
Query 1444 AGATCTAACTTTATCAGCTAAAATGTGGGGGCCCGGTGCAAGTCAAGGCGGAATTCTCCA 1503
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1395 AGATCTAACTTTATCAGCTAAAATGTGGGGTCCCGGTGCAAGTCAAGGTGGAATTCTCCA 1454
Query 1504 ATCATCGACATGCAAATTCGATCTGAAAGAACCTTATTATAGAATGTCTCAGCCACAAGC 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 ATCATCGACATGCAAATTCGATCTGAAAGAACCTTATTATAGAATGTCTCAGCCACAAGC 1514
Query 1564 ATACCCTGTTGCACAAGAACCACCTCTACAACCACAACCAGAGCTAAGTACACAGCAGGA 1623
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
Sbjct 1515 ATACCCTGTTGCACAAGAACCACCTCTACAACCACAACCAGAGCTAAATACACAG--G-A 1571
Query 1624 CATACAAACACCAAACGATGAATTAGAAGAAGAGTTACTGCAACAATTGCCACAGAACCC 1683
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1572 CATACAAACACCAAACGATGAATTAGAAGAAGAGTTACTGCAACAACCGCCACAGAACCC 1631
Query 1684 AAGTGCCCAGCTCTAAAAGCTAATA-AGTGAAATGAAGGTGAGAGATGATAATTGGGATC 1742
|||||||||||||||||||| ||| | |||||||||||||| ||| ||| | |||
Sbjct 1632 GAGTGCCCAGCTCTAAAAGCTTATACA-TGAAATGAAGGTGAT-GATAATA-TC---ATC 1685
Query 1743 TTTGAATCTCAGTCATATTTTGAGCTTGGGATTTCTGTTTGTAACGTCAAAAAGGTaaaa 1802
|||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct 1686 TTTGAATCTCAGTCATATTT-GAACTTGGGATTTCTGTTTGTTACGTCAAAAAGGTAAAA 1744
Query 1803 aaaaTGTTTCTGGTGTCTTTATGAGTTTTGGTATGGAAAGATCAAAATGATGAGCATGGA 1862
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1745 ----TGTTTCTGGTGTCTTTGTGAGTTTTGGTATGGTTCTATCAAAATGATGAGCATGGA 1800
Query 1863 AAGATCTTATCATTCCCATTGCTTCCATGGAAAAGTCTCTGCTTCTTTGTGTATTTCTTT 1922
||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||
Sbjct 1801 AAGATCTTATCATTCCCATTGCTTCCATGTAAGAGTCTCTGCTTCTTTGTGT-TTTCTTT 1859
Query 1923 TCACACCCAACTTATCAATTATTTACGTTATCTTTAAAAGCCACACGCAATGTAAACAAT 1982
||||||||||||||||||||||||| | |||||| || | ||||||||||||||||||||
Sbjct 1860 TCACACCCAACTTATCAATTATTTAAGGTATCTT-AACATCCACACGCAATGTAAACAAT 1918
Query 1983 GAATCAAGAATC 1994
||| ||||||||
Sbjct 1919 GAAACAAGAATC 1930
> Ahg494964 jgi|Araly1|494964|fgenesh2_kg.8__780__AT5G49020.1
Length=1640
Score = 1439 bits (779), Expect = 0.0
Identities = 1244/1466 (85%), Gaps = 42/1466 (3%)
Strand=Plus/Plus
Query 146 GTCACTGATCTCTCTTCGTCTT-C-CGT-TTCGTCGTCCTCTCCAGCTGTAGCTACGTTT 202
|||||||||||| |||| |||| | | | | | ||||| ||||| | |||||||||||||
Sbjct 102 GTCACTGATCTCACTTCTTCTTCCTCATCTCCTTCGTCATCTCCTGTTGTAGCTACGTTT 161
Query 203 TCCTACGTTGATGGAGTCACGGAGCTCCGATTTCTGCAATCGGATTCGACCCATTGTTTC 262
|| | |||| ||| ||||| ||| |||| ||||| | |||| || ||| | || |||||
Sbjct 162 TCATGCGTTAATGAAGTCAAGGAACTCCAATTTCAGGAATCTGAATCGTCTGATGGTTTC 221
Query 263 AATTTTGATC-TCGCTTCCGCTCAGTTATTCAAGTTGGGGCCAG-TCCAT-TTCATCTGT 319
| |||||||| | | ||| ||||||| |||||||||||||| | | | | ||||| |||
Sbjct 222 AGTTTTGATCTTAG-TTCAACTCAGTTGTTCAAGTTGGGGCC-GCTTC-TGTTCATTTGT 278
Query 320 GTATCTGATGGTTCAAGTTCTTCAGAGGAGAA---ATCATTCTC-CAAAGGAG-TCAATA 374
||||||||| |||| ||||| || ||||||| ||||| || | ||||| | | |
Sbjct 279 GTATCTGATATTTCAGGTTCTGCAAAGGAGAATTCGTCATTTTCTC-GAGGAGTTGTA-A 336
Query 375 TAAAATTCAAAAATGAGAAGGATAGCAAGGATTTTTGTGAGTCCTTTGAAGAGTGGAGAA 434
||||||| | | | || |||||||||||||| |||||||| || ||||| || || | ||
Sbjct 337 TAAAATTTAGAGACGACAAGGATAGCAAGGAATTTTGTGATTCATTTGAGGAATGTAAAA 396
Query 435 ATGATTCTGTTGTTCAAGGATCATCCTTGCAAAATGGAAC---AGTTTCAGCTAATAAAA 491
| ||||||||| |||||||||||||| || ||||| ||||||||||||||||
Sbjct 397 AGGATTCTGTTAAACAAGGATCATCCTTTTTGAACGGAACTGTTGTTTCAGCTAATAAAA 456
Query 492 GCAAGTTCGACAATAAGATAGAGGCGT-CATCGGCAAAAATGTATTTTCATTATTATGGA 550
|||||||||| ||||||||||||| | | || || ||||||||||| ||||||||||||
Sbjct 457 GCAAGTTCGATGATAAGATAGAGGC-TGCTTCAGCCAAAATGTATTTCCATTATTATGGA 515
Query 551 CAACTTCTACATCAGCAAAATATGCTACAAGATTATGTGCGGACAGGTACGTA-CTATGC 609
|||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 516 CAACTTCTACATCAGCAAAATATGCTACAAGATTATGTGCGGACAGGTACATATC-ATGC 574
Query 610 CGCAGTCATGGAGAATCATTCAGA-TTTTGCTGGTCGTGTTGTGGTCGATGTGGGTGCTG 668
|||||||||||||| | |||||| |||| |||| |||||||| ||||||||||| ||||
Sbjct 575 TGCAGTCATGGAGAACCGTTCAGACTTTT-CTGGCCGTGTTGTTGTCGATGTGGGCGCTG 633
Query 669 GGAGTGGCATTTTGTCAATGTTTGCGGCCCAGGCTGGTGCCAAACATGTGTATGCGGTTG 728
| ||||| ||||||||| ||||||| || | ||| |||||||| ||||||||||| ||||
Sbjct 634 GAAGTGGAATTTTGTCATTGTTTGCTGCACTGGCAGGTGCCAAGCATGTGTATGCTGTTG 693
Query 729 AAGCATCAGAAATGGCTGAGTATGCTCGTAAGCTGATTGCTGGAAACCCATTA-TTCGCT 787
|||| |||||||||||||| ||||| ||||||||||||||||| |||||||| || |||
Sbjct 694 AAGCGTCAGAAATGGCTGAATATGCCCGTAAGCTGATTGCTGGGAACCCATTGCTT-GCT 752
Query 788 GACCGAATCACAGTCATCAAGGGTAAAGTTGAGGATATCGAGTTGCCTGAGAAAGCAGAT 847
|| || ||||||||||||||||| ||| |||||||||| |||||||||||||| || |||
Sbjct 753 GAACGGATCACAGTCATCAAGGGAAAAATTGAGGATATTGAGTTGCCTGAGAAGGCCGAT 812
Query 848 ATTTTGATTTCTGAACCGATGGGCACCTTATTGGTCAACGAGAGAATGTTAGAATCGTAT 907
||||||| |||||||| ||||||||| |||||||||| ||||| ||||| ||| | |||
Sbjct 813 GTTTTGATCTCTGAACCAATGGGCACCCTATTGGTCAATGAGAGGATGTTGGAAACATAT 872
Query 908 GTAATTGCTAGGGATCGTTTTATGACTCCAAAAGGCAAAATGTTTCCCACTGTCGGAAGG 967
|| ||||||||||| |||||| || ||||||| || ||||||||||| || || ||||||
Sbjct 873 GTTATTGCTAGGGACCGTTTTCTGTCTCCAAACGGAAAAATGTTTCCGACAGTTGGAAGG 932
Query 968 ATTCACATGGCACCTTTTTCTGATGAATTCTTATTTATTGAGATGGCAAATAAGGCTATG 1027
|| |||||||||||||| | ||||||||||||||| |||| ||||||||||||||| |
Sbjct 933 ATCCACATGGCACCTTTCGCCGATGAATTCTTATTTGTTGAAATGGCAAATAAGGCTTTA 992
Query 1028 TTTTGGCAACAGCAGAACTATTATGGAGTTGATCTGACACCTCTATATGGATCAGCGCAC 1087
|||||||| || ||||||||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 993 TTTTGGCAGCAACAGAACTATTATGGAGTTGATTTGACACCTCTATATGTATCAGCCCAC 1052
Query 1088 CAAGGTTATTTTTCTCAGCCCGTGGTTGATGCATTTGATCCGAGATTATTAGTGGCTTC- 1146
|| ||||||||||| ||||||||||| |||||||||||||| |||||||| |||||| |
Sbjct 1053 CAGGGTTATTTTTCCCAGCCCGTGGTCGATGCATTTGATCCAAGATTATTGGTGGCTCCC 1112
Query 1147 TCCGATGTTCCACATGATAGATTTCACTCAAATGAAGGAAGAAGATTTTTACGAGATTGA 1206
|| |||||| || ||||||||||||||| |||||| ||||||| | ||||| ||||| ||
Sbjct 1113 TC-GATGTTTCATATGATAGATTTCACTAAAATGACGGAAGAACAATTTTATGAGATCGA 1171
Query 1207 TATCCCGTTGAAGTTCACTGCTTCCA-TGTGCACCAGAATGCATGGACTTGCCTGCTGGT 1265
|||||||||||||||||| || || | |||| ||||| ||||||||||||| || ||||
Sbjct 1172 TATCCCGTTGAAGTTCACAGCGTC-AGTGTGTACCAGGGTGCATGGACTTGCGTGTTGGT 1230
Query 1266 TTGACGTTCTCTTTGACGGGAGCACGGTCCAAAGATGGCTCACAACTGCTCCCGGTGCAC 1325
| |||||||| ||||||||||||||||| ||||||||| |||| |||||||| |||||||
Sbjct 1231 TCGACGTTCTTTTTGACGGGAGCACGGTACAAAGATGGTTCACGACTGCTCCTGGTGCAC 1290
Query 1326 CTACAACGCATTGGTACCAAATCAGATGTGTTCTCTCGCAGCCTATTTACGTAATGGCAG 1385
| || || |||||||||||||| |||||||||||||||||||||||| | || |||||||
Sbjct 1291 CAACGACCCATTGGTACCAAATAAGATGTGTTCTCTCGCAGCCTATTCATGTCATGGCAG 1350
Query 1386 GTCAAGAGATCACTGGTAGACTTCATTTGATAGCCCACAGTGCTCAGAGTTACACCATAG 1445
| |||||||| |||||||||||||||||| | |||||||||||||||||||| || |||
Sbjct 1351 GGCAAGAGATTACTGGTAGACTTCATTTGGTTGCCCACAGTGCTCAGAGTTATACTATAA 1410
Query 1446 ATCTAACTTTATCAGCTAAAATGTGGGGGCCCGGTGC-AAGTCAAGGCGGAATTCTCCA- 1503
||||||| | ||||||||||||||||| |||||||| || |||||| ||||| |||||
Sbjct 1411 ATCTAACCCTCTCAGCTAAAATGTGGGGTCCCGGTGCCAA-TCAAGGTGGAATCCTCCAG 1469
Query 1504 ATCATCGA-CATGCAAATTCGATCTGAAAG-AACCTTATTATAGAATGTCTCAGCCACAA 1561
| |||| | | |||||| ||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 1470 A-CATC-ATCGTGCAAACTCGATCT-AAAGGAACCCTATTATAGAATGTCTCAGCCACAA 1526
Query 1562 GCATACCCTGTTGCACAAGAACCACC 1587
| |||||| |||||||||||||
Sbjct 1527 GTTTACCCTA---CACAAGAACCACC 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76142399755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5