BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06960.1
Length=1654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928358 jgi|Araly1|928358|scaffold_300815.1 2416 0.0
Ahg951776 jgi|Araly1|951776|scaffold_15900005.1 874 0.0
Ahg478015 jgi|Araly1|478015|fgenesh2_kg.3__716__AT3G06950.1 145 1e-33
Ahg951777 jgi|Araly1|951777|scaffold_15900006.1 111 1e-23
> Ahg928358 jgi|Araly1|928358|scaffold_300815.1
Length=1480
Score = 2416 bits (1308), Expect = 0.0
Identities = 1424/1481 (96%), Gaps = 4/1481 (0%)
Strand=Plus/Plus
Query 24 CGGCGGCGGAGACGACGG-AGATGAACAGAATGAGATGGGTCGGAGAGGGAGACATCTGG 82
|||||||||| ||||||| | ||||| ||| |||||||||||||||||||||||||||||
Sbjct 1 CGGCGGCGGAAACGACGGCA-ATGAATAGACTGAGATGGGTCGGAGAGGGAGACATCTGG 59
Query 83 GACCTCGATATGTCAACTCCGGTGACGCTCGAGGGCACCGCACGAGCTGTTCCTGACGAT 142
|||||||| |||||||| |||| || |||||||| | ||||||||||||||| ||||||
Sbjct 60 GACCTCGACATGTCAACCCCGGCAACACTCGAGGGTATCGCACGAGCTGTTCCCGACGAT 119
Query 143 CCTCTTCCTCTAGGTCTCTCTAGAGGCACTCGTCTATCTCGCCCTAAGCAAGTTGAGTTC 202
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 120 CCTCTTCCTCTAGGTCTCTCTAGAGGCACTCGTCTCTCTCGCCCTAAGCAAGTTGAGTTC 179
Query 203 TTCCACCGCTTCATGGCCTCACCTCTCATCCCTTCCTTCTCCCCTATCCGTCCCAACACC 262
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTTCACCGCTTCATGACCTCACCTCTCATCCCTTCCTTCTCCCCTATCCGTCCCAACACC 239
Query 263 GGAGATGGAGGCGGTGGTGGATTCTCTCTTCAAAGAGTCCTCACTCTTCCTTTCTCCAAC 322
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGAGATGGAGGCTGTGGTGGATTCTCTCTTCAAAGAGTCCTCACTCTTCCTTTCTCCAAC 299
Query 323 AACTGGCTTGTGTCTCTTCTGGGCCAATTCGATGTTCAGAGATTCGTAACGGAGATAGAT 382
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 AACTGGCTTGTGTCTCTTCTGGGCCAATTCGATGTTCAGAGATTCGTATCGGAGATAGAA 359
Query 383 AAGACTAAAGCTTTTGGTCGAGGGTCTTCGTCTACAGTAGCTTCTCGTTTAAACACAATT 442
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 AAGACTAAAGCTTTTGGTCGAGGGTCTTCGTCTACGGTAGCTTCTCGTTTAAACACAATT 419
Query 443 GGCAAGCATTTGAAGGATAAATCTTTGTACGCATTGGGTTTTTGTTCTGAGTTTTTGTTA 502
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 GGCAAGCATTTGAAGGATAAATCTTTGTACGCATTGGGTTTTTGTTCTGAGTTCTTGTTA 479
Query 503 TCACCAGATGATACTTTGCTTCTTAGCTATGATGCTTACAAAGGTGATCTCGATAAGAAT 562
||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||
Sbjct 480 TCACCAGATGATACTTTGCTTCTTAGCTACGATACTTACAAAGGTGATCTTGAAAAGAAT 539
Query 563 CCTAGAGCTAAGGCTATCTTCAATCACGAGTTTCCGCTTCACAATCTGACAGCAGAAGCG 622
||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 CCTCGGGCTAAGGCTATCTTCAATCACGAGTTTCCGCTTCACAATCTGACAGCAGAGGCG 599
Query 623 GTTTGGCCTGGACTTTTTGTGGATAAACATGGTGAATATTGGGATGTGCCACTCTCAATG 682
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCTTGGCCTGGACTTTTTGTGGATAAACATGGTGAATATTGGGATGTGCCACTCTCAATG 659
Query 683 GCTATTGATCTAGCATCTCTTCCTGCTGAATCTGGTCCAAGTTACCATTTATGTTTACAC 742
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 660 GCTATTGATCTAGCATCTCTTCCTGCTGAGTCTGGTCCAAGTTACCATGTATGTTTACAC 719
Query 743 CATAACAGCGGATCACCCAAGAAGTTACATTCTGATACTATGGAAGTGCCTCCACCGTCA 802
|||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 720 CATAACAGCGGAGCACCCAAGAAGTTAAATTCGGATACTATGGAAGTGCCTCCACCGTCA 779
Query 803 CTGCTTCCTGGTTTGTCTCTGAAATCTGCAGTCTCTTATAGGACAAACATGGATCTCTGG 862
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 780 CTGCTTCCTGGTTTGTCTCTGAAATCCGCAGTGTCTTATAGGACAAACATGGATCTCTGG 839
Query 863 AGGGGTACCACTCCAAAGCTCGAAACTTGCAAGCCCTATGATGTCTTCCTCAGTAGTCCT 922
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 840 AGGGGTACCACTCCAAAGCTCGAAACTTGCAAGCCCTATGACGTCTTCCTCAGTAGTCCT 899
Query 923 CATGTCGCAGTATCTGGGATTATCGGCTCTGTGATGACCGCAGCATTTGGTGAAAATTCA 982
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CATGTCGCTGTATCTGGGATTATCGGCTCTGTGATGACCGCAGCATTTGGTGAAAATTCA 959
Query 983 ATCAGATCAAAATTTGAAAATGATTCTGAGGGTGTTGGAGGGTTCTCTCTTCATTTTCCA 1042
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATCAGATCAAAATCTGAGAATGATTCTGAGGGTGTTGGAGGGTTCTCTCTTCATTTTCCA 1019
Query 1043 TCTGTAAATTCCGGATTCATGGCTGATGCCTTAGGGCGGGCATCACTCACAGCTCAATAT 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TCTGTAAATTCCGGATTCATGGCTGATGCCTTAGGGCGGGCATCACTCACAGCTCAATAT 1079
Query 1103 GGAAACTTCCAGAAATTCTTCTTTGATCTCACCCGTTTCCATGCTAGATTAGACTTTCCG 1162
|||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1080 GGAAACTTCCAGAAGTCCTTCTTTGATCTCACCCGTTTCCATGCTAGATTAGACTATCCG 1139
Query 1163 CATGGTTTGAGGTTTCTTACCGGTGCCACTAGCGTCGCACAAGATCTTTTAAATTCTCGG 1222
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1140 CATGGTTTGAGGTTTCTTACCGGTGCCACTAGCGTCGCACACGATCTTTTAAATTCTCGG 1199
Query 1223 CAGCCTAGTTTAGAAGCATTTCAGAAAATCTGCCCTGAAGTATTAGTTTCTCTACAGCAA 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CAGCCTAGTTTAGAAGCATTTCAGAAAATCTGCCCTGAAGTATTAGTTTCTCTACAGCAA 1259
Query 1283 CAGATTGTTGGACCGTTTAGTTTCAAAGTGGAGTCTGGAATTGAGATCGATCTGAGGAAC 1342
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||
Sbjct 1260 CAGATTGTTGGACCGTTTAGTTTCAAAGTGGAGTCTGGAATTCAGATTGATCTGAAGAAC 1319
Query 1343 GGAGCTAACCCTGTGACTGTAGATAAGACAGTATTTGCTATTGAATATGCTCTTCAAGTG 1402
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1320 GGAGCTAACCCCGTGACTGTAGATAAGACAGTATTTGCTATTGAATATGCTCTACAAGTG 1379
Query 1403 CTTCTTTCTGCCAAGGCTGTTGTTTCGTACTCCCCAAAACAGAATGAGTTCATGGTTGAG 1462
|||||||||||||||||||||| || |||||||||||||||||| || ||||||||||||
Sbjct 1380 CTTCTTTCTGCCAAGGCTGTTGCTTGGTACTCCCCAAAACAGAAAGAATTCATGGTTGAG 1439
Query 1463 CTTCGTTTCTTTGAGACATAGTATCAGGATTTT--CCACTC 1501
||| |||||||||||||||||||||| |||||| ||||||
Sbjct 1440 CTTAGTTTCTTTGAGACATAGTATCAAGATTTTTTCCACTC 1480
> Ahg951776 jgi|Araly1|951776|scaffold_15900005.1
Length=1348
Score = 874 bits (473), Expect = 0.0
Identities = 534/562 (95%), Gaps = 9/562 (2%)
Strand=Plus/Plus
Query 948 GCTCTGTGATGACCGCAGCATTTGGTGAAAATTCAATCAGATCAAAATTTGAAAATGATT 1007
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 788 GCTCTGTGATGACCGCAGCA-TTGGTGAAAATTCAATCAGATCAAAATTTGAGAATGATT 846
Query 1008 CTGAGGGTGTTGGAGGGTTCTCTCTTCATTTTCCATCTGTAAATTCCGGATTCATGGCTG 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 CTGAGGGTGTTGGAGGGTTCTCTCTTCATTTTCCATCTGTAAATTCCGGATTCATGGCTG 906
Query 1068 ATGCCTTAGGGCGGGCATCACTCACAGCTCAATATGGAAACTTCCAGAAATTCTTCTTTG 1127
|| ||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 907 ATACCTTAGGACTGGCATCACTCACAGCTCAATATAGAAACTTCCAGAAGCTCTTCTTTG 966
Query 1128 ATCTCACCCGTTTCCATGCTAGATTAGACTTTCCGCATGGTTTGAGGTTTCTTACCGGTG 1187
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 967 ATCTCACCCGCTTCCATGCTAGATTAGACTTTCCGTATGGTTTGAGGTTTCTTACCGGTG 1026
Query 1188 CCACTAGCGTCGCACAAGATCTTTTAAATTCTCGGCAGCCTAGTTTAGAAGCATTTCAGA 1247
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CCACTAGCGTCTCACAAGATCTTTTAAATTCTCGGCAGCCTAGTTTAGAAGCATTTCAGA 1086
Query 1248 AAATCTGCCCTGAAGTATTAGTTTCTCTACAGCAACAGATTGTTGGACCGTTTAGTTTCA 1307
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1087 AAATCTGCCCTGAAGTATTAGTTTCTCTACAGCAACAGATTGTTGGACCGTCTAGTTTCA 1146
Query 1308 AAGTGGAGTCTGGAATTGAGATCGATCTGAGGAACGG------AGCTAACCCTGTGACTG 1361
||||||||||||||||| |||| ||||||| |||||| ||||||||| |||||||
Sbjct 1147 AAGTGGAGTCTGGAATTCAGATTGATCTGAAGAACGGGGTTGGAGCTAACCCCGTGACTG 1206
Query 1362 TAGATAAGACAGTATTTGCTATTGAATATGCTCTTCAAGTGCTTCTTTCTGCCAAGGCTG 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 TAGATAAGACAGTATTTGCTATTGAATATGCTCTTCAAGTGCTTCTTTCTGCCAAGGCTG 1266
Query 1422 TTGTTTCGTACTCCCCAAAACAGAATGAGTTCATGGTTGAGCTTCGTTTCTTTGAGACAT 1481
||| || |||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1267 TTGCTTGGTACTCCCCAAAACAGAAAGAATTCATGGTTGAGCTTCGTTTCTTTGAGACAT 1326
Query 1482 AGTATCAGGATTTT--CCACTC 1501
|||||||||||||| ||||||
Sbjct 1327 AGTATCAGGATTTTTTCCACTC 1348
Score = 595 bits (322), Expect = 3e-169
Identities = 346/358 (97%), Gaps = 0/358 (0%)
Strand=Plus/Plus
Query 591 AGTTTCCGCTTCACAATCTGACAGCAGAAGCGGTTTGGCCTGGACTTTTTGTGGATAAAC 650
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 400 AGTTTCCGCTTCACAATCTGACAGCAGAAGCGGTTTGGCTTGGACTTTTTGTGGATAATC 459
Query 651 ATGGTGAATATTGGGATGTGCCACTCTCAATGGCTATTGATCTAGCATCTCTTCCTGCTG 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 ATGGTGAATATTGGGATGTGCCACTCTCAATGGCTATTGATCTAGCATCTCTTCCTGCTG 519
Query 711 AATCTGGTCCAAGTTACCATTTATGTTTACACCATAACAGCGGATCACCCAAGAAGTTAC 770
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 AGTCTGGTCCAAGTTACCATTTATGTTTACACCATAACAGCGGATCACCCAAGAAGTTAA 579
Query 771 ATTCTGATACTATGGAAGTGCCTCCACCGTCACTGCTTCCTGGTTTGTCTCTGAAATCTG 830
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 580 ATTCTGATACTATGGAAGTGCCTCCACCGTCACTGCTTCCTTGTTTGTCTCTGACATCCG 639
Query 831 CAGTCTCTTATAGGACAAACATGGATCTCTGGAGGGGTACCACTCCAAAGCTCGAAACTT 890
|| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 640 CAATCTCTTATTGGACAAACATGGATCTCTGGAGGGGTACCACTCCGAAGCTCGAAACTT 699
Query 891 GCAAGCCCTATGATGTCTTCCTCAGTAGTCCTCATGTCGCAGTATCTGGGATTATCGG 948
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 ACAAGCCCTATGACGTCTTCCTCAGTAGTCCTCATGTCGCAGTATCTGGGATTATCGG 757
> Ahg478015 jgi|Araly1|478015|fgenesh2_kg.3__716__AT3G06950.1
Length=1171
Score = 145 bits (78), Expect = 1e-33
Identities = 93/100 (93%), Gaps = 2/100 (2%)
Strand=Plus/Minus
Query 1555 TAAATAGACAATGTTCTAATTGT-TCAGTTTCTTATGTCAAACAGAAGAATGTTTCAATA 1613
|||||||||||| || ||||| | |||||||||||||| ||||||||||||| |||||||
Sbjct 1171 TAAATAGACAATATTATAATT-TATCAGTTTCTTATGTTAAACAGAAGAATGATTCAATA 1113
Query 1614 GAAGGGAAGTTTACATTTTGTTATAGTGTGATGTCTACCA 1653
|||||||||||||||||||||||||||||||||||||||
Sbjct 1112 AAAGGGAAGTTTACATTTTGTTATAGTGTGATGTCTACCA 1073
> Ahg951777 jgi|Araly1|951777|scaffold_15900006.1
Length=778
Score = 111 bits (60), Expect = 1e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 1588 ATGTCAAACAGAAGAATGTTTCAATAGAAGGGAAGTTTACATTTTGTTATAGTGTGATGT 1647
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ATGTTAAACAGAAGAATGATTCAATAGAAGGGAAGTTTACATTTTGTTATAGTGTGATGT 716
Query 1648 CTACCA 1653
||||||
Sbjct 715 CTACCA 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62010918860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5