BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G06962.1

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg903586 jgi|Araly1|903586|Al_scaffold_0003_714                     350    3e-96


> Ahg903586 jgi|Araly1|903586|Al_scaffold_0003_714
Length=210

 Score =  350 bits (189),  Expect = 3e-96
 Identities = 203/210 (97%), Gaps = 0/210 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAGGTTCGTGGCGTTTCTTCTTTAGCTTCTTCGGCAGTTTCAAAGCGTGGTGGCGA  60
            ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  1    ATGGGAGGTTCTTGGCGTTTCTTCTTTAGCTTCTTTGGCAGTTTCAAAGCATGGTGGCGA  60

Query  61   CGGAGACAGAGATCGAACCAGGCAGGAACGGACGATGAGATGTATGGTGAAGATAGTGAA  120
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   CGGAGACAGAGATCGAACCAGGCAGGAACGGACGACGAGATGTATGGTGAAGATAGTGAA  120

Query  121  GCCAACTTCTATAATTGGTACCTCGTTGAACCAGCTATTAACCGGAGATCCACTGATTTC  180
            |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  121  GCCAACTTCTATAACTGGTACCTCGTGGAACCAGCTATTAACCGGAGATCCACTGATTTT  180

Query  181  ATCAAAAGGTTCCACGAGACTCGTGACTGA  210
            ||||||||||||||||||||||||||||||
Sbjct  181  ATCAAAAGGTTCCACGAGACTCGTGACTGA  210



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7141204807


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5