BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06980.1
Length=2581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478019 jgi|Araly1|478019|fgenesh2_kg.3__720__AT3G06980.1 3598 0.0
> Ahg478019 jgi|Araly1|478019|fgenesh2_kg.3__720__AT3G06980.1
Length=2476
Score = 3598 bits (1948), Expect = 0.0
Identities = 2236/2372 (94%), Gaps = 31/2372 (1%)
Strand=Plus/Plus
Query 65 ATGTTGGCGAGAGCTCCACCGCCTTATTTTAA-TTTCCCGGCGAGGAATAATACTATCTG 123
|||||||| ||||||||||| || | |||||| ||| |||||||||| | | | ||||||
Sbjct 1 ATGTTGGCCAGAGCTCCACCACCGTCTTTTAACTTT-CCGGCGAGGAGT-A-A-TATCTG 56
Query 124 TAATCGGAATGAGATTGTGCGGT-TGTTTCGTAA---C-G--GCGGAGGAGTGGTAGCTA 176
|||||||| |||||||||| || | |||||||| | | ||||||||||||||||
Sbjct 57 TAATCGGAGGGAGATTGTGC-GTCTATTTCGTAACGGCGGAAGCGGAGGAGTGGTAGC-- 113
Query 177 GAGGAGCTGGTTTCACTCGGCGACCACTGGAAACTTCGAGCTCTTACGACGATTCCACCG 236
| |||| |||||| |||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 114 CA-GAGCCGGTTTCGTTCGGCGGCCACTGGAAACTTCGAGTTCGTACGACGATTCCACCG 172
Query 237 ATGACGGATTCGTTATCATCAGTGCGGCAGATAAGGAGAATGAGTTCGCTCCTCCGCCTT 296
||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 173 ATGACGGATTCATTATCATCAGTTCGGTGGATAAGGAGAATGAGTTCTCTCCTCCGCCTA 232
Query 297 CTTCCGATTTACTCTCTTCGATTCCGTCAGAATCTGCGAGAAGAAATGGTTCGCGTTCGA 356
|| |||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||
Sbjct 233 CTCCCGATTTACTCTCTTCGATTCCGTCAGAATCTACGAGAAGAAATGCTTCGCGGTCGA 292
Query 357 GAGGTCTGACTGCGAGTTTTGGAAGGTTAAAGGCCCAGAAAGTGAAAGCTCTTGTTGGGA 416
|||| | ||||| |||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 293 GAGGAGTAACTGCAAGTTTTGGAAGGCTAAAGGCACAGAAAGTGAAAGCTCTTGTTGGAA 352
Query 417 AGGTAACGCAGAAGAAGCAGCATATGAGTCACAATGAGGAAGAAGACGAGGATGACGCCT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 AGGTAACGCAGAAGAAGCAGCATATGAGTCACAATGAGGAAGAAGACGAGGATGACGCCT 412
Query 477 CTGATG-AGA--ATTATTCTGCGGATGAAGGGTTTGGTTCATCATCAATTCTGGATTTGA 533
|||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CTGATGCAGAGGATTATCCTGCGGATGAAGGGTTTGGTTCATCATCAATTCTGGATTTGA 472
Query 534 TGAGGAAGAAGCTGGCTATGAAGGCTATTCCTAGATCAGGAAAATCTGCAGAGAGGAACG 593
|||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 473 TGAGGAAGAAGCTGGCTATGAAGGCTATTCCTAGGGCAGGAAAATCTGCAGAGATAAAGG 532
Query 594 AGGTAAAAAGAGCTAGCAAAGTGCGGGAATCTAGAGAGTCAAGAAGAGATTTAGATAGAT 653
|||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 533 AGGTGAAAAGAGTTAGCAAAGTGCGGGAATCTAGAGAGTCAAGAAGAGATTTAAATAGAT 592
Query 654 TGGAAGGAGATGATGAAGATGTTGATGAGGTTTCAAATCCTGACAGGTTTACTGATAATC 713
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 593 TGGAAGGAGATTATGAAGATGTTGAGGAGGTTTCAAATCCTGACAGGTTTACTGATAATG 652
Query 714 AGAGAGCAGGGTCGCGGAGTTCATATTCAAAAGGTGGTTATGCTGCTAACTCCAGGGGTA 773
|||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||
Sbjct 653 AGAGAGCAGGGTCGCGGAGTTCTTATTCAAAA---GGCTATGCTGCTAACTCCAGGGGTA 709
Query 774 AGGGTGATAGGCTTTCGGTTGCAAGAGATTTAGATTCATTTGAGGGACATGGTAGAGCTA 833
|||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 710 AGGGCGGTAGGCTTTCGGTTGCAAGAGATTTAGATTCATTTGAAGGACATGATAGAGCTA 769
Query 834 TTGATGAGGTTTCAAACCCTCGAAAGTTTAATGATAACGAGAGAGCAGAATCAAGGAGTT 893
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 770 TTGATGAGGTTTCAAACCCTCGAAAGTTTAATGATAACGAGAGAGCAGGATCGCGGAGTT 829
Query 894 CATATTCAAGAGACTCTTCTGCTAACTCCAGGGGTAGAGAAGATAGGCGTTTTGTTGCCA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CATATTCAAGAGACTCTTCTGCTAACTCCAGGGGTAGAGAAGATAGGCGTTTTGTTGCCA 889
Query 954 AAGAGTTAGATACATTTCAGGGACGTGATAAAGCTTATGATGAGGTTTATAATCCTCGAA 1013
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 AAGAGTTAAATACATTTCAGGGACGTGATAAAGCTTATGATGAGGTTTATAATCCTCGAA 949
Query 1014 GGTTCACTGATAATGAGAGAGGA--CTCAGAGGAGGATCACATTCAAAAGGCTCTGATAC 1071
| ||||||||||||||||||||| ||| | |||| |||||||||||||||||||
Sbjct 950 GATTCACTGATAATGAGAGAGGAGGATCACA--TTTATCATATTCAAAAGGCTCTGATAC 1007
Query 1072 TAACTCTC-GGGGTTGGGGTGATAGGCGTTCTGTTGTATATACAAGAGATATGGATGATT 1130
|||||| | |||||||||| ||||||||||||||||| ||| | ||||||||||||||||
Sbjct 1008 TAACTC-CAGGGGTTGGGGCGATAGGCGTTCTGTTGTTTATGCTAGAGATATGGATGATT 1066
Query 1131 GGAGAGAG---AGGAATAAAACCAAGGATACTAGGGAGACTGGCTTTTTTAGCCGGAAAA 1187
|||||||| |||||||||||||| | |||||| |||||||||||||||||||||||||
Sbjct 1067 GGAGAGAGAATAGGAATAAAACCAATGCTACTAGAGAGACTGGCTTTTTTAGCCGGAAAA 1126
Query 1188 CTTTTGCAGAAATTGGATGTAGTGAAGATATGATGAAGGCCTTAAAGGAACAGAATTTTG 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 CTTTTGCAGAAATTGGATGTAGTGAAGATATGATGAAGGCCTTAAAGGAACAGAATTTTG 1186
Query 1248 ATCGCCCGGCACATATTCAGGCTATGGCTTTTTCACCAGTTATTGATGGAAAGAGTTGTA 1307
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 ACCGCCCGGCACATATTCAGGCTATGGCTTTTTCACCAGTTATTGATGGAAAGAGTTGTA 1246
Query 1308 TCATAGCTGACCAAAGTGGATCAGGCAAGACACTGGCATATCTTGTCCCTGTTATTCAGC 1367
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1247 TCATAGCTGACCAAAGTGGATCAGGCAAGACACTGGCATATCTTGTCCCTGCTATTCAGC 1306
Query 1368 GTCTCAGGGAAGAAGAGCTTCAAGGACACAGCAAATCGTCTCCTGGGTGTCCTCGTGTCA 1427
||||||| |||||||| ||||||||||| ||||| || ||| |||||||||||||||| |
Sbjct 1307 GTCTCAGAGAAGAAGAACTTCAAGGACAGAGCAACTCATCTTCTGGGTGTCCTCGTGTTA 1366
Query 1428 TTGTTCTGGTACCAACTGCAGAGTTGGCTTCTCAGGTTCTTGCTAACTGTAGATCAATAT 1487
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1367 TTGTTCTGGTACCGACAGCAGAGTTGGCTTCCCAGGTTCTTGCTAACTGTAGATCAATAT 1426
Query 1488 CAAAGTCTGGGGTCCCGTTCCGTTCGATGGTAGTGACGGGTGGCTTCAGACAACGAACCC 1547
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1427 CAAAGTCTGGGGTCCCGTTCCGTTCCATGGTAGTGACGGGTGGCTTCAGACAACGAACCC 1486
Query 1548 AGCTAGAAAATTTAGAGCAAGGTGTTGACGTTTTGATTGCAACACCAGGGCGTTTCACGT 1607
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1487 AGCTAGAAAATTTAGAGCAAGGTGTTGACGTTTTGATTGCAACACCTGGGCGTTTCATGT 1546
Query 1608 ACCTAATGAACGAAGGAATTTTGGGGTTGTCAAATTTAAGATGTGCCATCTTGGATGAGG 1667
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 ACCTAATGAACGAAGGAATATTGGGGTTGTCAAATTTAAGATGTGCCATCTTGGATGAGG 1606
Query 1668 TGGATATACTCTTTGGCGACGATGAGTTTGAGGCAGCCCTGCAAAATTTGATAAACTCTT 1727
| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1607 TAGATATACTCTTTGGCGATGATGAGTTTGAGGCAGCCCTGCAAAGTTTGATAAACTCTT 1666
Query 1728 CTCCTGTTACTGCACAGTATCTATTTGTTACAGCAACCTTGCCACTTGAAATATACAACA 1787
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1667 CTCCTGTTACTGCACAGTATCTATTTGTTACAGCAACCTTGCCACTTGAGATATACAACA 1726
Query 1788 AACTTGTTGAAGTTTTCCCTGATTGTGAAGTTGTAATGGGACCTCGAGTGCACCGTGTTA 1847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 AACTTGTTGAAGTTTTCCCTGATTGTGAAGTTGTAATGGGACCTCGAGTGCACCGTGTTA 1786
Query 1848 GTAATGCTCTCGAAGAGTTTCTTGTTGACTGTAGTGGAGATGATAATGCAGAGAAAACTC 1907
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1787 GTAATGCTCTCGAAGAGTTTCTTGTCGACTGTAGTGGAGATGATAATGCAGAGAAAACTC 1846
Query 1908 CTGAGACTGCATTTCAGAACAAGAAAACTGCTCTCCTTCAGATAATGGAGGAAAACCCTG 1967
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1847 CTGAGACTGCTTTTCAGAACAAGAAAACTGCTCTCCTTCAGATTATCGAGGAAAACCCTG 1906
Query 1968 TTTCCAAAACTATTATCTTCTGCAATAAGATTGAGACATGTAGGAAAGTTGAGAACATAT 2027
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1907 TTTCCAAAACTATTATCTTCTGCAATAAGATTGAGACATGTAGGAAAGTTGAGAATATAT 1966
Query 2028 TTAAGCGGGTTGATAGAAAGGAAAGACAGTTGCACGTCCTACCTTTTCATGCTGCACTCT 2087
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1967 TTAAGCGGGTTGATAGAAAGGAAAGACAATTGCACGTCCTACCTTTTCATGCTGCACTCT 2026
Query 2088 CACAAGAGTCAAGGCTTACAAACATGCAAGAATTCACATCATCTCAGCCCGAAGAAAATT 2147
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2027 CACAAGAATCAAGGCTTACAAACATGCAAGAATTCACATCATCGCAGCCCGAAGAAAATT 2086
Query 2148 CACTGTTTCTGGTTTGCACTGATAGAGCCTCCCGTGGGATAGATTTCTCTGGTGTTGATC 2207
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2087 CACTGTTTCTGGTTTGCACGGATAGAGCCTCCCGTGGGATAGATTTCTCTGGTGTTGATC 2146
Query 2208 ATGTGGTGCTCTTTGACTTCCCACGTGACCCCAGTGAATACGTGAGACGTGTAGGAAGAA 2267
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2147 ATGTGGTGCTCTTTGACTTCCCACGTGACCCGAGTGAATACGTGAGACGTGTTGGAAGAA 2206
Query 2268 CAGCAAGAGGGGCTAGGGGAAAAGGAAAGGCTTTCATCTTTGTGGTGGGGAAGCAAGTAG 2327
|||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 2207 CAGCAAGAGGGGCTAGAGGAGAAGGAAAGGCTTTCATCTTTGTGGTGGGGAAACAAGTAG 2266
Query 2328 GGTTGGCACGGAGGATAATTGAGCGAAATGAGAAAGGTCACCCAGTTCATGATGTCCCAA 2387
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2267 GGTTGGCACGGAGGATAATTGAGCGAAATCAGAAAGGTCACCCAGTTCATGATGTCCCAA 2326
Query 2388 ACGCTTACGAGTTCACAACCTAAGTAACTCTT 2419
|||| ||||||||||||||||||||||| |||
Sbjct 2327 ACGCATACGAGTTCACAACCTAAGTAACACTT 2358
Score = 97.1 bits (52), Expect = 6e-19
Identities = 78/89 (88%), Gaps = 8/89 (9%)
Strand=Plus/Plus
Query 2490 TACGTAGAGAAGCCAAGTCCAAATTTTGACCATTA-GTC--T--GTTGTAATGTTGTTAA 2544
||||||||||||||||||||||||||| ||| || ||| | ||||||||||||||||
Sbjct 2390 TACGTAGAGAAGCCAAGTCCAAATTTT-ACCCCTAAGTCGATCTGTTGTAATGTTGTTAA 2448
Query 2545 TGAC-ACTTAACCTCCAAGCTCATGGAGT 2572
|| | || |||||||||||||||||||||
Sbjct 2449 TG-CTACATAACCTCCAAGCTCATGGAGT 2476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97320575975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5