BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G06985.1

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg317561 jgi|Araly1|317561|fgenesh1_pm.C_scaffold_3000577           257    2e-68


> Ahg317561 jgi|Araly1|317561|fgenesh1_pm.C_scaffold_3000577
Length=213

 Score =  257 bits (139),  Expect = 2e-68
 Identities = 189/213 (89%), Gaps = 4/213 (2%)
 Strand=Plus/Plus

Query  1    ATGAATTGCAAGATTGAATTCATGAGCTTCCTCGTGATGACTTCAATAGTCATCCTATTT  60
            |||||||||||||||| ||||||||||||| | ||||| |||||||||||||||||||||
Sbjct  1    ATGAATTGCAAGATTGGATTCATGAGCTTCGTGGTGATCACTTCAATAGTCATCCTATTT  60

Query  61   CTCTTTGTTTCAGGGAAAGTTGAAGCTGAACCCCAATGCATTGGATCATGTGAAATGCTT  120
            ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct  61   CTCTTGGTTTCAGGGAAAGTTGAAGCTAAACCCAAATGCATTGGATCATGTGAAATACTT  120

Query  121  GCTGACTGTAACA-CGGCTTGTATCAGGATGGGATACTTATTTGGCCAATGCGTTGGCTG  179
            | |||||||  || | ||||| || | || ||||||||||||||||||||||||||||||
Sbjct  121  GGTGACTGTGGCATC-GCTTGCATGAAGAAGGGATACTTATTTGGCCAATGCGTTGGCTG  179

Query  180  GAA-AACTCCCGATATGTGTTGTTGCAACCATT  211
            ||  || |||| |||| |||||||||  |||||
Sbjct  180  GAGTAA-TCCCAATATATGTTGTTGCGGCCATT  211



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7255769590


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5