BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G07005.1

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928366 jgi|Araly1|928366|scaffold_300823.1                        217    3e-56


> Ahg928366 jgi|Araly1|928366|scaffold_300823.1
Length=256

 Score =  217 bits (117),  Expect = 3e-56
 Identities = 198/234 (85%), Gaps = 18/234 (8%)
 Strand=Plus/Plus

Query  1    ATGAATTATAAGATTGGAATCATGAGCTTGCTCGTGATTACTTCAATAATCTTCCTCTTT  60
            |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  23   ATGAATTACAAGATTGGATTCATGAGCTTGCTCGTGATTACTTCAATAATCTTCCTCTTT  82

Query  61   CTGGTTCCAGATAAAGTAGAAGCGCAAAAAGAATGCATTGGACCATGTGATAT-GTTTAC  119
            ||| |||||||||||||||||||||||| ||||||||||| ||||||| | || | ||  
Sbjct  83   CTGATTCCAGATAAAGTAGAAGCGCAAACAGAATGCATTGCACCATGT-ACATTGGTTGG  141

Query  120  GGACTGTCAAG-CCGCTTGCGTCGGGATTAGGAAAGGATACAAT-TATGGTCAATGTGTT  177
            ||||||| | | |||||||| || | |  |  || ||||||| | | |||||||||||||
Sbjct  142  GGACTGT-ACGGCCGCTTGCATCAG-A--A--AA-GGATACACTGT-TGGTCAATGTGTT  193

Query  178  GCCTGGAAGCCCAAGGATGACGATCCCTTTACATGTTGTTGCTACAAATTAACT  231
            | |||||||     | ||||||||||||||| |||||||||| || |||| |||
Sbjct  194  GGCTGGAAG-----G-ATGACGATCCCTTTATATGTTGTTGCAACTAATTGACT  241



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8172287854


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5