BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07010.1
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478021 jgi|Araly1|478021|fgenesh2_kg.3__722__AT3G07010.1 2614 0.0
Ahg494953 jgi|Araly1|494953|fgenesh2_kg.8__769__AT5G48900.1 1074 0.0
Ahg359757 jgi|Araly1|359757|fgenesh1_pg.C_scaffold_890000001 523 1e-147
> Ahg478021 jgi|Araly1|478021|fgenesh2_kg.3__722__AT3G07010.1
Length=1685
Score = 2614 bits (1415), Expect = 0.0
Identities = 1603/1691 (95%), Gaps = 24/1691 (1%)
Strand=Plus/Plus
Query 1 AAGATAATGGGAATGGTCACACAAtcttcttcttatattaacttctctctcccgtagcc- 59
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAGATAATGGGAATGGTCACACAATCTTCTTCTTATATTAACATCTCTCTCCCGTAGCCT 60
Query 60 tttcttctactcttcttctcatattcct-cttcctttttctttccttAT-ATCGAGAAAA 117
|||||||||||||||||||| ||||||| ||| ||| ||||| || | |||||||||
Sbjct 61 TTTCTTCTACTCTTCTTCTCCTATTCCTCCTT--TTTCTCTTTTTTTTTCTTCGAGAAAA 118
Query 118 GCCTCTGCCTCATATAGAGATAACTAAACAGAACAGAGCAAGAACTA-TACAGCCATAAC 176
|||||||||||| ||||||| | |||||||||||||||||||||| | ||||||||||||
Sbjct 119 GCCTCTGCCTCAGATAGAGACAGCTAAACAGAACAGAGCAAGAAC-ACTACAGCCATAAC 177
Query 177 AATGGCTGTCACAAAACTTATTCTCTTTGCTTCTGCATTACTTCTAACAGCTCTATTTAT 236
||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||
Sbjct 178 AATGGCTGTCACAAAACTTATTCTCTTTGCTTCTGCATTGCTTCTAACAACTCTCTTTAT 237
Query 237 CGGCGTTAATGCATCCAGGTCCAATGAAACATGGCATGAACATGCAGTTGAGAACCCAGA 296
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CGGCGTTAATTCATCCAGGTCCAATGAAACATGGCATGAACATGCAGTTGAGAACCCAGA 297
Query 297 TGAAGTCGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGAGCGGAGAAGATTAGG 356
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 298 CGAAGTAGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGAGCGGCGAAGATTAGG 357
Query 357 TTACTTCTCCTGCGCCACCGGCAACCCAATCGACGATTGCTGGCGTTGCGACCGCAAATG 416
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 TTACTTCTCCTGCGCCACCGGCAATCCAATCGACGATTGCTGGCGTTGCGACCGCAAATG 417
Query 417 GCAGCTCCGTCGCAAACGTTTAGCCGATTGCTCAATCGGATTTGGCCGCAACGCAATCGG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCAGCTCCGTCGCAAACGTTTAGCCGATTGCTCAATCGGATTTGGCCGCAACGCAATCGG 477
Query 477 AGGCCGCGACGGTCGTTTCTACGTCGTAACCGACCCTGGAGACGACGATCCCGTTAATCC 536
|||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 478 AGGCCGCGACGGTCGTTTCTACGTCGTAACCGACCCAGGAGACGACAATCCGGTTAATCC 537
Query 537 CATACCGGGAACACTCCGTCACGCCGTGATTCAAGACGAACCACTCTGGATCATCTTCAA 596
| ||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 538 GACACCGGGAACACTCCGTCACGCCGTGATCCAGGACGAGCCACTCTGGATCATCTTCAA 597
Query 597 ACGCGACATGGTTATAACCTTGAAGCAAGAGCTGATCATGAACAGCTTCAAAACCATCGA 656
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 598 ACGCGACATGGTCATAACCTTGAAGCAAGAGCTGATCATGAACAGCTTCAAAACCATTGA 657
Query 657 TGGTCGTGGTGTCAATGTTCACATCGCTAATGGAGCTTGTCTCACGATTCAATACGTTAC 716
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 658 TGGTCGTGGTGTCAATGTTCACATAGCTAATGGAGCTTGTCTCACGATTCAGTACGTTAC 717
Query 717 GAACATTATTGTCCATGGGATTCATGTCCATGACTGTA-AGCCTACGGGTAACGCTATGG 775
||||||||||||||||||||||||| | ||||||||| | ||||||||||| |||||||
Sbjct 718 GAACATTATTGTCCATGGGATTCATATTCATGACTGTGTA-CCTACGGGTAATGCTATGG 776
Query 776 TTAGAAGCTCTCCGTCCCATTATGGGTTTAGATCAATGGCTGATGGTGACGCGATCTCGA 835
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 777 TTAGAAGCTCTCCGTCGCATTATGGGTTTAGATCGATGGCTGATGGTGACGCCATCTCGA 836
Query 836 TTTTTGGATCGAGTCATATCTGGATTGATCACAATTCGCTTTCTAATTGTGCTGATGGAC 895
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 837 TTTTTGGGTCGAGTCATATTTGGATTGATCACAATTCGCTTTCTAATTGTGCTGATGGGC 896
Query 896 TTGTTGACGCTGTTATGAGCTCCACCGCCATTACTGTCTCAAACAATTTCTTCACCCACC 955
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 897 TTGTTGACGCTGTTATGAGTTCCACCGCCATTACTGTCTCAAACAATTTCTTCACCCATC 956
Query 956 ACAATGAGGTTATGTTGTTGGGGCATAGTGATTCATACACAAGAGACAAGGTGATGCAAG 1015
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 957 ACAATGAGGTTATGTTGTTGGGGCACAGTGACTCATACACAAGAGACAAGGTGATGCAAG 1016
Query 1016 TTACAATTGCTTACAACCATTTTGGTGAAGGTTTAATCCAGAGAATGCCAAGATGTAGGC 1075
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1017 TCACAATTGCTTACAACCATTTTGGTGAAGGTTTAATCCAGAGAATGCCAAGGTGTAGGC 1076
Query 1076 ATGGATATTTCCATGTAGTTAACAATGACTACACTCATTGGGAAATGTATGCAATTGGTG 1135
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1077 ATGGATATTTCCATGTAGTTAACAATGACTACACGCATTGGGAAATGTATGCAATTGGTG 1136
Query 1136 GTAGTGCTGGTCCAACCATCAACAGTCAGGGCAATCGATTTCTTGCTCCAGTCAA-CCCA 1194
|||||||| |||| |||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 1137 GTAGTGCTAGTCCCACCATCAACAGTCAGGGCAATCGATTTCTTGCCCCAA-CAAACCCA 1195
Query 1195 TTTGCTAAGGAGGTGACTAAGAGAGAGTACACAGGAGAATCGAAATGGAAGCACTGGAAT 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TTTGCTAAGGAGGTGACTAAGAGAGAGTACACAGGAGAATCGAAATGGAAGCACTGGAAT 1255
Query 1255 TGGAGATCAGAAGGAGATCTTTTCTTAAACGGAGCATTTTTCACACGTTCTGGAGCTGGA 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TGGAGATCAGAAGGAGATCTTTTCTTAAACGGAGCATTTTTCACACGTTCTGGAGCTGGA 1315
Query 1315 GCTGGAGCCAACTATGCCAGAGCTTCGAGTTTATCAGCCAAATCATCCTCACTCGTCGGC 1374
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1316 GCTGGATCCAACTATGCCAGAGCTTCGAGTTTATCAGCCAAATCATCCTCACTCGTTGGC 1375
Query 1375 ACCATGACCTCTTACTCAGGTGCTCTTAACTGCAGAGCCGGTCGTCGATGTTAATTGATC 1434
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1376 ACCATGACCTCTTACTCAGGTGCTCTTAACTGCAGAGCTGGTCGTCGATGTTAATTGATC 1435
Query 1435 AAGAATCAG-AAGaaaa-aaaa--------CCtttttttGGTTGTGCAGTAGTCGACAAG 1484
||||||||| ||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1436 AAGAATCAGGAAGAAAACAAAAAAAAAAAACCTTTTTTTGGTTGTGCAGTAGTCGACAAG 1495
Query 1485 TTTACCCGTATCAGGCCCTATGTCTTTT-C-TTCTTCACttttttttttttGTTTTCACT 1542
||||||| ||||||||||| ||| |||| | || ||||||||||||||||| ||||||||
Sbjct 1496 TTTACCCATATCAGGCCCTCTGTTTTTTTCCTT-TTCACTTTTTTTTTTTTTTTTTCACT 1554
Query 1543 CTTGGGGTCTCTTGCGATATATGCTTCCTAGTGGATGCGGAGGCCTAATTTAAACGGCTT 1602
|||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||
Sbjct 1555 CTTGGGGTCTCTTGCGATATATGCTTCCTATTGGATGTGGAAGCCTAATTTAAACGGCTT 1614
Query 1603 CAACTGTAATATAAAGTTGTATGATTAATTCTTTTCACCTCTATTGATATAAAGTTGTTT 1662
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1615 CAACTGTAATATAAAGTTGTATGATTAATTCTTTTCACGTCCATTGATATAAAGTTGTTT 1674
Query 1663 CATTAGTCGTT 1673
||| |||||||
Sbjct 1675 CATGAGTCGTT 1685
> Ahg494953 jgi|Araly1|494953|fgenesh2_kg.8__769__AT5G48900.1
Length=1517
Score = 1074 bits (581), Expect = 0.0
Identities = 983/1175 (84%), Gaps = 36/1175 (3%)
Strand=Plus/Plus
Query 273 TGAACATGCAGTTGAGAACCCAGATGAAGTCGCTGCCATGGTGGACATGAGCATTCGAAA 332
|||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 188 TGAACAGGCAGTTGAGAATCCAGAGGAAGTAGCTGCCATGGTGGACATGAGCATTCGAAA 247
Query 333 CAGCACAGAGCGGAGAAGATTAGGTTACTTCTCCTGCGCCACCGGCAACCCAATCGACGA 392
||||||||| || |||| |||||| |||||||| || | ||||| || |||||||||||
Sbjct 248 CAGCACAGAACGAAGAAAATTAGGATACTTCTCATGTTCAACCGGAAATCCAATCGACGA 307
Query 393 TTGCTGGCGTTGCGACCGCAAATGGC-AGCTCCGTCGCAAACG-TTTAGCCGATTGCTCA 450
|| |||||||| || || | ||||| | || || || ||| | ||||||| ||||| ||
Sbjct 308 CTGTTGGCGTTGTGATCGGAGATGGCAATCT-CGGCG-AAAAGCTTTAGCCAATTGCGCA 365
Query 451 ATCGGATTTGGCCGCAACGCAATCGGAGGCCGCGACGGTCGTTTCTACGTCGTAACCGAC 510
|||||||| || || ||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 366 ATCGGATTCGGTCGAAACGCAATCGGAGGCCGAGACGGTCGTTACTACGTCGTAAGCGAC 425
Query 511 CCTGGAGACGACGAT--CCC-GTTAATCCC-ATACCGGGAACACTCCGTCACGCCGTGAT 566
|| | |||||||| ||| ||||| ||| | |||||||||| | |||||||| || ||
Sbjct 426 CC---AAACGACGATAACCCGGTTAA-CCCTAAACCGGGAACATTACGTCACGCAGTAAT 481
Query 567 TCAAGACGAACCACTCTGGATCATCTTCAAACGCGACATGGTTATAACCTT-GAAGCAAG 625
|||||| |||||||| ||||| |||| ||||| |||||||| ||||| || ||| |||
Sbjct 482 TCAAGAAGAACCACTATGGATTGTCTTTAAACGTGACATGGTCATAACATTAAAAG-AAG 540
Query 626 AGCTGATCATGAACAGCTTCAAAACCATCGATGGTCGTGGTGTCAATGTTCACATCGCTA 685
| || ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 541 AACTAATCATGAACAGTTTCAAAACAATCGATGGTCGTGGTGTGAATGTTCACATAGCTA 600
Query 686 ATGGAGCTTGTCTCACGATTCAATACGTTACGAACATTATTGTCCATGGGATTCATGTCC 745
|||| || ||| |||||||||| | ||| || |||||||| | |||||||||||| | |
Sbjct 601 ATGGTGCATGTATCACGATTCAGTTCGTGACTAACATTATCATTCATGGGATTCATATTC 660
Query 746 ATGACTGTAAG-CCTACGGGTAACGCTATGGTTAGAAGCTCTCCGTCCCATTATGGGTT- 803
|||| ||| || || || |||||||||||||||||||||||||| || |||||| ||||
Sbjct 661 ATGATTGT-AGACCAACTGGTAACGCTATGGTTAGAAGCTCTCCTTCACATTAT-GGTTG 718
Query 804 TAGATCAATGGCTGATGGTGACGCGATCTCGATTTTTGGATCGAGTCATATCTGGATTGA 863
||| | ||||||||||| || | ||| |||||||| || ||||||||||| ||||||||
Sbjct 719 GAGAACTATGGCTGATGGAGATGGGATTTCGATTTTCGGGTCGAGTCATATTTGGATTGA 778
Query 864 TCACAATTCGCTTTCTAATTGTGCTGATGGACTTGTTGACGCTGTTATGAGC-TCCACCG 922
||| ||||||||||| |||||||||||||| ||| |||| ||||||||| || || || |
Sbjct 779 TCATAATTCGCTTTCGAATTGTGCTGATGGGCTTATTGATGCTGTTATG-GCTTCTACTG 837
Query 923 CCATTACTGTCTCAAACAATTTCTTCACCCACCACAATGAGGTTATGTTGTTGGGGCATA 982
| |||||| |||| || |||| |||||| |||||||||||||||||||| ||||| ||||
Sbjct 838 CTATTACTATCTCCAATAATTACTTCACACACCACAATGAGGTTATGTTATTGGGACATA 897
Query 983 GTGATTCATACACAAGAGACAAGGTGATGCAAGTTACAATTGCTTACAACCATTTTGGTG 1042
||||| | || ||||| || ||||| |||||||||||||||||||| || ||||| ||||
Sbjct 898 GTGATACCTATACAAGGGATAAGGTTATGCAAGTTACAATTGCTTATAATCATTTCGGTG 957
Query 1043 AAGGT-TTAATCCAGAGAATGCCAAGATGTAGGCATGGATATTTCCATGTAGTTAACAAT 1101
||||| || || |||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 958 AAGGTCTT-ATTCAGAGAATGCCAAGGTGTAGGCATGGATATTTTCATGTAGTGAACAAT 1016
Query 1102 GACTACACTCATTGGGAAATGTATGCAATTGGTGGTAGTGCTG-GTCCAACCATCAACAG 1160
||||| || |||||||||||||||||||| ||||| ||||| | |||| ||||| |||||
Sbjct 1017 GACTATACGCATTGGGAAATGTATGCAATCGGTGGCAGTGC-GAGTCCTACCATTAACAG 1075
Query 1161 TCAGGGCAATC-GATTTCTTGCTCC-AGTCAACCCATTTGCTAAGGAGGTGACTAAGAGA 1218
|| || || | ||| ||| || || || |||| ||||| || ||||| || ||||||
Sbjct 1076 CCAAGG-AAACAGATATCTCGCCCCGAG-AAACCGGTTTGCGAAAGAGGTAACAAAGAGA 1133
Query 1219 GAGTACACAGGAG-AATCGAAATGGAAGCACTGGAATTGGAGATCAGAAGGAGATCTTTT 1277
|| || |||| | ||| | |||||| ||| |||||||||||||||||||||||||||||
Sbjct 1134 GACTATGCAGG-GCAATGGCAATGGAGGCATTGGAATTGGAGATCAGAAGGAGATCTTTT 1192
Query 1278 CTTAAACGGAGCATTTTTCACACGTTCTGGAGCTGGAGCT-GGAGCCAACTATGCCAGAG 1336
||||||||||||||| ||||||||||||||| | ||| || ||||| | ||| || ||||
Sbjct 1193 CTTAAACGGAGCATTCTTCACACGTTCTGGATCAGGA-CTTGGAGCGAGCTACGCTAGAG 1251
Query 1337 CTTCGAGTTTATCAGCCAAATCATCCTCACTCGTCGGCACCATGACCT-CT-TACTCAGG 1394
|||| |||||| ||||||| ||||| ||||| || ||| ||| |||| | | | | ||
Sbjct 1252 CTTCAAGTTTAGCAGCCAAGTCATCATCACTTGTTGGCGTCATCACCTACAATGC-C-GG 1309
Query 1395 TGCTCTTAACTGCAGAGCCGGTCGTCGATGTTAAT 1429
||||||||| ||||||| ||||| || |||||||
Sbjct 1310 TGCTCTTAATTGCAGAGGTGGTCGCCGGTGTTAAT 1344
> Ahg359757 jgi|Araly1|359757|fgenesh1_pg.C_scaffold_890000001
Length=600
Score = 523 bits (283), Expect = 1e-147
Identities = 501/603 (83%), Gaps = 27/603 (4%)
Strand=Plus/Plus
Query 186 CACAAA-ACTTATTCTCTTTGCTTCTGCATTACTTCTAAC-A-GCTCTATTTATC-GGCG 241
|||||| |||| | |||||||||||||||||||| ||| | | | | | || | | ||||
Sbjct 11 CACAAATACTTGTCCTCTTTGCTTCTGCATTACTCCTATCAATG-T-TCTTCA-CTGGCG 67
Query 242 T-TAATGCATCCAGGTCCAATGAAACATGGCATGAACATGCAGTTGAGAACCCAGATGAA 300
| | | || | ||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 68 TCGATTCCA-CAAGGTCTAATGAAACATGGCATGAACATGCAGTTGAGAATCCAGAGGAA 126
Query 301 GTCGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGAGCGGAGAAGATTAGGTTAC 360
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 127 GTAGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGAACGAAGAAGATTAGGTTAC 186
Query 361 TTCTCCTGCGCCACCGGCAACCCAATCGACGATTGCTGGCGTTGCGACCGCAAATGGCAG 420
||||| ||| | ||||| || ||||||||||| || |||||||| || || | ||||||
Sbjct 187 TTCTCATGCTCAACCGGAAATCCAATCGACGACTGTTGGCGTTGTGATCGGAGATGGCAA 246
Query 421 -CTCCGTCGCAAA-CGTTTAGCCGATTGCTCAATCGGATTTGGCCGCAACGCAATCGGAG 478
||| | || ||| | ||||||| ||||| |||| ||||| || |||||||||||||| |
Sbjct 247 TCTCGG-CGAAAAGC-TTTAGCCAATTGCGCAATTGGATTCGGTCGCAACGCAATCGGTG 304
Query 479 GCCGCGACGGTCGTTTCTACGTCGTA-ACCGACCCTGGAGACGACGAT--CCCG-TTAAT 534
|||| |||||||||| |||||| ||| || ||||| | |||||||| |||| ||||
Sbjct 305 GCCGAGACGGTCGTTACTACGTAGTAGAC-GACCCA--A-ACGACGATAACCCGGTTAA- 359
Query 535 CCC-ATACCGGGAACACTCCGTCACGCCGTGATTCAAGACGAACCACTCTGGATCATCTT 593
||| | |||||||||| | |||||||| || |||||||| |||||||| ||||| ||||
Sbjct 360 CCCTAAACCGGGAACATTACGTCACGCAGTAATTCAAGAAGAACCACTATGGATTGTCTT 419
Query 594 CAAACGCGACATGGTTATAACCTTGAA-GCAAGAGCTGATCATGAACAGCTTCAAAACCA 652
||||| |||||||| ||||| || || | |||| || ||||||||||| |||||||| |
Sbjct 420 TAAACGTGACATGGTCATAACATTAAAAG-AAGAACTAATCATGAACAGTTTCAAAACAA 478
Query 653 TCGATGGTCGTGGTGTCAATGTTCACATCGCTAATGGAGCTTGTCTCACGATTCAATACG 712
|||||||||||||||| ||||||||||| |||||||| || ||| |||||||||| | ||
Sbjct 479 TCGATGGTCGTGGTGTGAATGTTCACATAGCTAATGGTGCATGTATCACGATTCAGTTCG 538
Query 713 TTACGAACATTATTGTCCATGGGATTCATGTCCATGACTGTA-AGCCTACGGGTAACGCT 771
| || |||||||| | |||||||||||| | ||||| |||| | || || |||||||||
Sbjct 539 TGACTAACATTATCATTCATGGGATTCATATTCATGATTGTAGA-CCAACTGGTAACGCT 597
Query 772 ATG 774
|||
Sbjct 598 ATG 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62734633515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5