BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G07020.2 Length=2493 Score E Sequences producing significant alignments: (Bits) Value Ahg928368 jgi|Araly1|928368|scaffold_300825.1 3240 0.0 Ahg910807 jgi|Araly1|910807|Al_scaffold_0001_1061 244 2e-63 > Ahg928368 jgi|Araly1|928368|scaffold_300825.1 Length=1952 Score = 3240 bits (1754), Expect = 0.0 Identities = 1895/1962 (97%), Gaps = 13/1962 (1%) Strand=Plus/Plus Query 93 GAGATAGAGAGAGAATCACGATGCCGGAAATATCGCCGGCTGAGCTCGCCAAGGTTTCTT 152 |||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||| | Sbjct 3 GAGATAGAGAGAGATTCACGATGCCGGAAATATCTCCGGCTGAGCTAGCCAGGGTTTC-T 61 Query 153 CCTCGtcttcttcttcttcttcCTCAAGTTCCGGCAGAGCGTCGGTGAAAATCGAAGAGA 212 ||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 62 --TCG---TCTTCTTCTTCTTCCTCAAGTTCCGGCCGAGCGTCGGTGAAAATCGAGGAGA 116 Query 213 TTGAAGGCGGTGCTGCTGCTAGTGGCGTCGTCATTGTTTCTGAAGAACTTGAGACCAATC 272 |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 117 TTGAAGGCGGTGCTGCTGCTGGTGGCGTCGTCATTGGCTCTGAAGAACTTGAGACCAATC 176 Query 273 CCAAAACTGTTGTTGCCTCCATTGCTGATGAAACTGTCGCTGAATCTTCAGGTACTGGCA 332 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 177 CCAAAACTGTTGTTGCCTCCATTGCTGATGAAACTGTGGCTGAATCTTCAGGTTCTGGCA 236 Query 333 ATAAAAGCTTTTCTCGAGTATGGACAATGCCATTGGAGGGTTCATCGAGCAGTGATAAGG 392 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 237 ATAAAAGCTTTTCTCGAGTATGGACAATGCCATTGGAGGGTTCATCGAGCAGTGATAGGG 296 Query 393 CTGAATCATCATCAACAAACCAACCTAGGTTAGATAAATCAAAGACTGAGAGGCAGCAAA 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 CTGAATCATCATCAACAAACCAACCTAGGTTAGATAAATCAAAGACTGAGAGGCAGCAAA 356 Query 453 AAGTTACTCACATTCTTGCTGAGGATGCTGCTAAGATTTTCGATGACAAAATCTCTGCAG 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 AAGTTACTCACATTCTTGCTGAGGATGCTGCTAAGATTTTCGATGACAAAATCTCTGCAG 416 Query 513 GGAAGAAGCTTAAATTGCTGAACCGTATAGCTACTGTGAAACATGATGGGACTGTTGAGT 572 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 417 GGAAGAAGCTTAAATTGCTGAACCGTATAGCTACTGTGAAACATGATGGGACAGTTGAAT 476 Query 573 TTGAAGTTCCAGCAGATGCTATCCCTCAACCTATTGTTGTTGATCGTGGAGAATCGAAAA 632 |||| ||||||||||||| |||||| ||||||||||||||||| |||| ||||||||||| Sbjct 477 TTGACGTTCCAGCAGATGTTATCCCCCAACCTATTGTTGTTGACCGTGAAGAATCGAAAA 536 Query 633 ACGGTGTTTGCGCTGATGAGTCTATTGATGGGGTTGACCTTCAGTATATCCCTCCTATGC 692 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 ACGGTCTTTGCGCTGATGAGTCTATTGATGGGGTTGACCTTCAGTATATCCCTCCTATGC 596 Query 693 AAATTGTGATGTTAATTGTTGGAACACGTGGAGATGTTCAACCTTTTGTTGCAATAGCCA 752 |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 597 AAATCGTGATGTTAATTGTTGGAACACGCGGTGATGTTCAACCTTTTGTTGCAATAGCCA 656 Query 753 AACGGCTTCAGGACTATGGCCATCGAGTTAGACTTGCAACTCATGCAAATTTTAAAGAGT 812 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 657 AACGGCTTCAGGACTATGGCCATCGAGTTAGACTTGCAACTCATGCTAATTTTAAAGAGT 716 Query 813 TTGTTTTGACTGCTGGATTAGAGTTTTATCCTCTAGGTGGAGATCCAAAAGTGCTCGCCG 872 ||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| | Sbjct 717 TTGTTTTGACTGCTGGATTGGAGTTCTATCCTTTAGGTGGAGATCCAAAAGTGCTCGCTG 776 Query 873 GTTATATGGTTAAGAACAAGGGCTTTTTGCCATCAGGCCCTTCAGAGATTCCAATTCAAC 932 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 777 GTTATATGGTTAAGAACAAGGGATTTTTGCCATCAGGCCCTTCAGAGATTCCAATTCAAC 836 Query 933 GAAACCAAATGAAGGACATCATATATTCTCTACTTCCAGCATGTAAAGAACCTGATCCAG 992 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 GAAACCAAATGAAGGACATCATATATTCTCTACTTCCAGCATGTAAAGAACCTGATCCAG 896 Query 993 ATTCTGGGATTTCCTTTAAAGCTGATGCAATTATTGCCAACCCTCCAGCGTATGGACATA 1052 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 897 ATTCTGGAATTTCCTTTAAAGCTGATGCAATTATTGCCAACCCTCCAGCATATGGACATA 956 Query 1053 CCCATGTGGCAGAAGCACTGAAGATACCGATTCACGTATTTTTCACCATGCCATGGACAC 1112 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 957 CCCATGTCGCAGAAGCACTGAAGATACCGATTCATGTATTTTTCACCATGCCATGGACAC 1016 Query 1113 CAACAAGTGAATTTCCACACCCATTGTCACGTGTCAAACAACCAGCAGGATACAGACTTT 1172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 CAACAAGTGAATTTCCACACCCATTGTCACGTGTCAAACAACCAGCAGGATACAGACTTT 1076 Query 1173 CATATCAAATCGTCGATTCATTGATCTGGCTTGGAATAAGAGATATGGTAAATGACCTTA 1232 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 CGTATCAAATCGTCGACTCATTGATCTGGCTTGGAATAAGAGATATGGTAAATGACCTTA 1136 Query 1233 GGAAAAAGAAATTGAAACTACGGCCTGTTACATATCTAAGTGGAACACAAGGATCTGGAT 1292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 GGAAAAAGAAATTGAAACTACGGCCTGTTACATATCTAAGTGGAACACAAGGATCTGGAT 1196 Query 1293 CTAATATCCCACATGGATATATGTGGAGTCCTCACCTTGTACCAAAGCCAAAAGACTGGG 1352 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1197 CTAATATCCCACATGGATATATGTGGAGTCCTCACCTTGTCCCAAAGCCAAAAGACTGGG 1256 Query 1353 GGCCTCAAATTGATGTAGTGGGATTTTGCTATCTTGATCTTGCATCCAACTATGAACCTC 1412 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1257 GGCCTCAAATTGATGTAGTGGGATTTTGCTTTCTTGATCTTGCATCCAACTATGAACCTC 1316 Query 1413 CTGCAGAGCTTGTGGAATGGCTAGAAGCTGGTGACAAGCCCATATATATCGGCTTTGGTA 1472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 CTGCAGAGCTTGTGGAATGGCTAGAAGCTGGTGACAAGCCCATATATATCGGCTTTGGTA 1376 Query 1473 GTCTCCCTGTGCAAGAACCAGAGAAAATGACAGAAATCATTGTGGAAGCACTTCAAAGAA 1532 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1377 GTCTACCTGTGCAAGAACCAGAGAAAATGACAGAAATCATTGTAGAAGCACTTCAAAGAA 1436 Query 1533 CTAAACAGAGAGGAATCATCAACAAAGGTTGGGGTGGCCTTGGAAACTTGAAAGAACCGA 1592 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1437 CTAAACAGAGAGGAATCATCAACAAAGGCTGGGGTGGACTTGGAAACTTGAAAGAACCGA 1496 Query 1593 AGGACTTTGTTTACTTGTTGGATAATGTCCCACATGACTGGCTATTCCCGAGATGCAAAG 1652 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1497 AGGACTTCGTTTACTTGTTGGATAATGTCCCACATGACTGGCTATTCCCGAGATGCAAGG 1556 Query 1653 CTGTGGTTCATCATGGTGGTGCTGGAACAACGGCTGCGGGTCTTAAAGCCTCGTGCCCAA 1712 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1557 CTGTGGTTCATCATGGTGGTGCTGGAACAACTGCTGCAGGTCTTAAAGCCTCGTGCCCAA 1616 Query 1713 CTACAATCGTGCCTTTCTTTGGAGACCAACCTTTTTGGGGAGAACGAGTGCATGCTAGAG 1772 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1617 CTACGATCGTGCCTTTCTTTGGAGACCAACCTTTTTGGGGAGAACGAGTGCATGCTAGAG 1676 Query 1773 GTGTTGGTCCTTCACCAATCCCAGTGGATGAATTCTCACTTCATAAGCTTGAAGATGCCA 1832 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1677 GTGTAGGTCCTGCACCAATCCCAGTGGATGAATTCTCACTTCATAAGCTTGAAGATGCCA 1736 Query 1833 TAAATTTCATGCTCGACGATAAGGTAAAGAGCAGTGCAGAGACACTAGCAAAGGCGATGA 1892 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 1737 TAAATTTCATGCTCGACGATAAGGTGAAGAGCAGTGCAGAGACGCTAGCAAAGGCGATGA 1796 Query 1893 AGGACGAGGATGGTGTGGCTGGAGCCGTGAAGGCCTTCTTTAAACATCTTCCAAGTGCAA 1952 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1797 AGGACGAGGATGGTGTGGCTGGAGCCGTGAAGGCCTTCTTTAAACATCTTCCAAGTGCGA 1856 Query 1953 AACAGAATATCTC-GGATCCGATCCCAGAACCTTCTGGATTTCTCTCTTTCAGGAAATGC 2011 |||||||| | || ||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 1857 AACAGAATCT-TCCGGATCAGATCCCAGAACCTTCTGGATTTCTCTCTTTCAGAAAATGC 1915 Query 2012 TTTGGCTGTTCGTAACTTTCTTCTCTCCCTCCAGAATCTCCT 2053 ||||||||||||||||| || ||| || ||||||||||||| Sbjct 1916 TTTGGCTGTTCGTAACT--CT-CTC-CC-TCCAGAATCTCCT 1952 > Ahg910807 jgi|Araly1|910807|Al_scaffold_0001_1061 Length=426 Score = 244 bits (132), Expect = 2e-63 Identities = 150/159 (94%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 151 TTCCTCGtcttcttcttcttcttcCTCAAGTTCCGGCAGAGCGTCGGTGAAAATCGAAGA 210 ||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||| || Sbjct 102 TTCTTCTTCTTCTTCATCTTCTTCCTCAAGTTCCGGCCGAGCGTCGGTGAAAATCGAGGA 161 Query 211 GATTGAAGGCGGTGCTGCTGCTAGTGGCGTCGTCATTGTTTCTGAAGAACTTGAGACCAA 270 ||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 162 GATTGAAAGCGGTGCTGCTGGTAGTGGCGTCGTCATTGGCTCTGAAGAACTTGAGACCAA 221 Query 271 TCCCAAAACTGTTGTTGCCTCCATTGCTGATGAAACTGT 309 ||||||||||||||||||||||||||||||||||||||| Sbjct 222 TCCCAAAACTGTTGTTGCCTCCATTGCTGATGAAACTGT 260 Score = 239 bits (129), Expect = 8e-62 Identities = 149/159 (94%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 586 AGATGCTATCCCTCAACCTATTGTTGTTGATCGTGGAGAATCGAAAAACGGTGTTTGCGC 645 ||||| |||||| ||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 264 AGATGGTATCCCCCAACCTATTGTTGTTGACCGTGAAGAATCGAAAAACGGTGTTTGCGC 323 Query 646 TGATGAGTCTATTGATGGGGTTGACCTTCAGTATATCCCTCCTATGCAAATTGTGATGTT 705 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 324 TGATGAGTCTATTGATGGGGTTGACCTTCAGTATATCCCTCCTACGCAAATTGTGATGCT 383 Query 706 AATTGTTGGAACACGTGGAGATGTTCAACCTTTTGTTGC 744 |||| | ||||||||||||||||||| |||||| ||||| Sbjct 384 AATTCTCGGAACACGTGGAGATGTTCCACCTTTGGTTGC 422 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93968634415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5