BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07020.2
Length=2493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928368 jgi|Araly1|928368|scaffold_300825.1 3240 0.0
Ahg910807 jgi|Araly1|910807|Al_scaffold_0001_1061 244 2e-63
> Ahg928368 jgi|Araly1|928368|scaffold_300825.1
Length=1952
Score = 3240 bits (1754), Expect = 0.0
Identities = 1895/1962 (97%), Gaps = 13/1962 (1%)
Strand=Plus/Plus
Query 93 GAGATAGAGAGAGAATCACGATGCCGGAAATATCGCCGGCTGAGCTCGCCAAGGTTTCTT 152
|||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||| |
Sbjct 3 GAGATAGAGAGAGATTCACGATGCCGGAAATATCTCCGGCTGAGCTAGCCAGGGTTTC-T 61
Query 153 CCTCGtcttcttcttcttcttcCTCAAGTTCCGGCAGAGCGTCGGTGAAAATCGAAGAGA 212
||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 62 --TCG---TCTTCTTCTTCTTCCTCAAGTTCCGGCCGAGCGTCGGTGAAAATCGAGGAGA 116
Query 213 TTGAAGGCGGTGCTGCTGCTAGTGGCGTCGTCATTGTTTCTGAAGAACTTGAGACCAATC 272
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 117 TTGAAGGCGGTGCTGCTGCTGGTGGCGTCGTCATTGGCTCTGAAGAACTTGAGACCAATC 176
Query 273 CCAAAACTGTTGTTGCCTCCATTGCTGATGAAACTGTCGCTGAATCTTCAGGTACTGGCA 332
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 177 CCAAAACTGTTGTTGCCTCCATTGCTGATGAAACTGTGGCTGAATCTTCAGGTTCTGGCA 236
Query 333 ATAAAAGCTTTTCTCGAGTATGGACAATGCCATTGGAGGGTTCATCGAGCAGTGATAAGG 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 237 ATAAAAGCTTTTCTCGAGTATGGACAATGCCATTGGAGGGTTCATCGAGCAGTGATAGGG 296
Query 393 CTGAATCATCATCAACAAACCAACCTAGGTTAGATAAATCAAAGACTGAGAGGCAGCAAA 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTGAATCATCATCAACAAACCAACCTAGGTTAGATAAATCAAAGACTGAGAGGCAGCAAA 356
Query 453 AAGTTACTCACATTCTTGCTGAGGATGCTGCTAAGATTTTCGATGACAAAATCTCTGCAG 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AAGTTACTCACATTCTTGCTGAGGATGCTGCTAAGATTTTCGATGACAAAATCTCTGCAG 416
Query 513 GGAAGAAGCTTAAATTGCTGAACCGTATAGCTACTGTGAAACATGATGGGACTGTTGAGT 572
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 417 GGAAGAAGCTTAAATTGCTGAACCGTATAGCTACTGTGAAACATGATGGGACAGTTGAAT 476
Query 573 TTGAAGTTCCAGCAGATGCTATCCCTCAACCTATTGTTGTTGATCGTGGAGAATCGAAAA 632
|||| ||||||||||||| |||||| ||||||||||||||||| |||| |||||||||||
Sbjct 477 TTGACGTTCCAGCAGATGTTATCCCCCAACCTATTGTTGTTGACCGTGAAGAATCGAAAA 536
Query 633 ACGGTGTTTGCGCTGATGAGTCTATTGATGGGGTTGACCTTCAGTATATCCCTCCTATGC 692
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ACGGTCTTTGCGCTGATGAGTCTATTGATGGGGTTGACCTTCAGTATATCCCTCCTATGC 596
Query 693 AAATTGTGATGTTAATTGTTGGAACACGTGGAGATGTTCAACCTTTTGTTGCAATAGCCA 752
|||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 597 AAATCGTGATGTTAATTGTTGGAACACGCGGTGATGTTCAACCTTTTGTTGCAATAGCCA 656
Query 753 AACGGCTTCAGGACTATGGCCATCGAGTTAGACTTGCAACTCATGCAAATTTTAAAGAGT 812
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 657 AACGGCTTCAGGACTATGGCCATCGAGTTAGACTTGCAACTCATGCTAATTTTAAAGAGT 716
Query 813 TTGTTTTGACTGCTGGATTAGAGTTTTATCCTCTAGGTGGAGATCCAAAAGTGCTCGCCG 872
||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |
Sbjct 717 TTGTTTTGACTGCTGGATTGGAGTTCTATCCTTTAGGTGGAGATCCAAAAGTGCTCGCTG 776
Query 873 GTTATATGGTTAAGAACAAGGGCTTTTTGCCATCAGGCCCTTCAGAGATTCCAATTCAAC 932
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 777 GTTATATGGTTAAGAACAAGGGATTTTTGCCATCAGGCCCTTCAGAGATTCCAATTCAAC 836
Query 933 GAAACCAAATGAAGGACATCATATATTCTCTACTTCCAGCATGTAAAGAACCTGATCCAG 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GAAACCAAATGAAGGACATCATATATTCTCTACTTCCAGCATGTAAAGAACCTGATCCAG 896
Query 993 ATTCTGGGATTTCCTTTAAAGCTGATGCAATTATTGCCAACCCTCCAGCGTATGGACATA 1052
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 897 ATTCTGGAATTTCCTTTAAAGCTGATGCAATTATTGCCAACCCTCCAGCATATGGACATA 956
Query 1053 CCCATGTGGCAGAAGCACTGAAGATACCGATTCACGTATTTTTCACCATGCCATGGACAC 1112
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 957 CCCATGTCGCAGAAGCACTGAAGATACCGATTCATGTATTTTTCACCATGCCATGGACAC 1016
Query 1113 CAACAAGTGAATTTCCACACCCATTGTCACGTGTCAAACAACCAGCAGGATACAGACTTT 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CAACAAGTGAATTTCCACACCCATTGTCACGTGTCAAACAACCAGCAGGATACAGACTTT 1076
Query 1173 CATATCAAATCGTCGATTCATTGATCTGGCTTGGAATAAGAGATATGGTAAATGACCTTA 1232
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CGTATCAAATCGTCGACTCATTGATCTGGCTTGGAATAAGAGATATGGTAAATGACCTTA 1136
Query 1233 GGAAAAAGAAATTGAAACTACGGCCTGTTACATATCTAAGTGGAACACAAGGATCTGGAT 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GGAAAAAGAAATTGAAACTACGGCCTGTTACATATCTAAGTGGAACACAAGGATCTGGAT 1196
Query 1293 CTAATATCCCACATGGATATATGTGGAGTCCTCACCTTGTACCAAAGCCAAAAGACTGGG 1352
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1197 CTAATATCCCACATGGATATATGTGGAGTCCTCACCTTGTCCCAAAGCCAAAAGACTGGG 1256
Query 1353 GGCCTCAAATTGATGTAGTGGGATTTTGCTATCTTGATCTTGCATCCAACTATGAACCTC 1412
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1257 GGCCTCAAATTGATGTAGTGGGATTTTGCTTTCTTGATCTTGCATCCAACTATGAACCTC 1316
Query 1413 CTGCAGAGCTTGTGGAATGGCTAGAAGCTGGTGACAAGCCCATATATATCGGCTTTGGTA 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CTGCAGAGCTTGTGGAATGGCTAGAAGCTGGTGACAAGCCCATATATATCGGCTTTGGTA 1376
Query 1473 GTCTCCCTGTGCAAGAACCAGAGAAAATGACAGAAATCATTGTGGAAGCACTTCAAAGAA 1532
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1377 GTCTACCTGTGCAAGAACCAGAGAAAATGACAGAAATCATTGTAGAAGCACTTCAAAGAA 1436
Query 1533 CTAAACAGAGAGGAATCATCAACAAAGGTTGGGGTGGCCTTGGAAACTTGAAAGAACCGA 1592
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1437 CTAAACAGAGAGGAATCATCAACAAAGGCTGGGGTGGACTTGGAAACTTGAAAGAACCGA 1496
Query 1593 AGGACTTTGTTTACTTGTTGGATAATGTCCCACATGACTGGCTATTCCCGAGATGCAAAG 1652
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1497 AGGACTTCGTTTACTTGTTGGATAATGTCCCACATGACTGGCTATTCCCGAGATGCAAGG 1556
Query 1653 CTGTGGTTCATCATGGTGGTGCTGGAACAACGGCTGCGGGTCTTAAAGCCTCGTGCCCAA 1712
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1557 CTGTGGTTCATCATGGTGGTGCTGGAACAACTGCTGCAGGTCTTAAAGCCTCGTGCCCAA 1616
Query 1713 CTACAATCGTGCCTTTCTTTGGAGACCAACCTTTTTGGGGAGAACGAGTGCATGCTAGAG 1772
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 CTACGATCGTGCCTTTCTTTGGAGACCAACCTTTTTGGGGAGAACGAGTGCATGCTAGAG 1676
Query 1773 GTGTTGGTCCTTCACCAATCCCAGTGGATGAATTCTCACTTCATAAGCTTGAAGATGCCA 1832
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 GTGTAGGTCCTGCACCAATCCCAGTGGATGAATTCTCACTTCATAAGCTTGAAGATGCCA 1736
Query 1833 TAAATTTCATGCTCGACGATAAGGTAAAGAGCAGTGCAGAGACACTAGCAAAGGCGATGA 1892
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1737 TAAATTTCATGCTCGACGATAAGGTGAAGAGCAGTGCAGAGACGCTAGCAAAGGCGATGA 1796
Query 1893 AGGACGAGGATGGTGTGGCTGGAGCCGTGAAGGCCTTCTTTAAACATCTTCCAAGTGCAA 1952
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1797 AGGACGAGGATGGTGTGGCTGGAGCCGTGAAGGCCTTCTTTAAACATCTTCCAAGTGCGA 1856
Query 1953 AACAGAATATCTC-GGATCCGATCCCAGAACCTTCTGGATTTCTCTCTTTCAGGAAATGC 2011
|||||||| | || ||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1857 AACAGAATCT-TCCGGATCAGATCCCAGAACCTTCTGGATTTCTCTCTTTCAGAAAATGC 1915
Query 2012 TTTGGCTGTTCGTAACTTTCTTCTCTCCCTCCAGAATCTCCT 2053
||||||||||||||||| || ||| || |||||||||||||
Sbjct 1916 TTTGGCTGTTCGTAACT--CT-CTC-CC-TCCAGAATCTCCT 1952
> Ahg910807 jgi|Araly1|910807|Al_scaffold_0001_1061
Length=426
Score = 244 bits (132), Expect = 2e-63
Identities = 150/159 (94%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 151 TTCCTCGtcttcttcttcttcttcCTCAAGTTCCGGCAGAGCGTCGGTGAAAATCGAAGA 210
||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 102 TTCTTCTTCTTCTTCATCTTCTTCCTCAAGTTCCGGCCGAGCGTCGGTGAAAATCGAGGA 161
Query 211 GATTGAAGGCGGTGCTGCTGCTAGTGGCGTCGTCATTGTTTCTGAAGAACTTGAGACCAA 270
||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 162 GATTGAAAGCGGTGCTGCTGGTAGTGGCGTCGTCATTGGCTCTGAAGAACTTGAGACCAA 221
Query 271 TCCCAAAACTGTTGTTGCCTCCATTGCTGATGAAACTGT 309
|||||||||||||||||||||||||||||||||||||||
Sbjct 222 TCCCAAAACTGTTGTTGCCTCCATTGCTGATGAAACTGT 260
Score = 239 bits (129), Expect = 8e-62
Identities = 149/159 (94%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 586 AGATGCTATCCCTCAACCTATTGTTGTTGATCGTGGAGAATCGAAAAACGGTGTTTGCGC 645
||||| |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 264 AGATGGTATCCCCCAACCTATTGTTGTTGACCGTGAAGAATCGAAAAACGGTGTTTGCGC 323
Query 646 TGATGAGTCTATTGATGGGGTTGACCTTCAGTATATCCCTCCTATGCAAATTGTGATGTT 705
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 324 TGATGAGTCTATTGATGGGGTTGACCTTCAGTATATCCCTCCTACGCAAATTGTGATGCT 383
Query 706 AATTGTTGGAACACGTGGAGATGTTCAACCTTTTGTTGC 744
|||| | ||||||||||||||||||| |||||| |||||
Sbjct 384 AATTCTCGGAACACGTGGAGATGTTCCACCTTTGGTTGC 422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93968634415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5