BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07030.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903595 jgi|Araly1|903595|Al_scaffold_0003_723 1343 0.0
> Ahg903595 jgi|Araly1|903595|Al_scaffold_0003_723
Length=1242
Score = 1343 bits (727), Expect = 0.0
Identities = 1101/1267 (87%), Gaps = 84/1267 (7%)
Strand=Plus/Plus
Query 1 ATGGATAGATACCAGAGAGTCGCTAAACCGAAACCAGAGTCTCCGATTAACGAGAATGAG 60
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATAGATACGAGAGAGTCGTTAAACCGAAACCAGAGTCTCCGATTAACGAGAATGAG 60
Query 61 ATCCGTATCACCAGTAAAGGCCTTATCCGAAACTACATCAGTTATGCCACCAGTCTTCTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 ATCCGTATCACCAGTAAAGGCCTTATCCGAAACTACATCAGTTATGCCACCACTCTTCTT 120
Query 121 CAGGAGAAAAGTGTTAAAGACATTGTGTTGAAGGCAATGGGGCAGGCAATCAGCAAGACT 180
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGGAGAAAAATGTGAAAGACATTGTGTTGAAGGCAATGGGGCAGGCAATCAGCAAGACG 180
Query 181 GTGGCTATCTCTGAGATACTAAAAAATAAAATCCCAGGTTTGCATCAAGATATTGCAATC 240
||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 181 GTGGCCATCTCTGAGATACTAAAGAATAAAATTCCAGGTTTGCATCAAGACATTGCAATC 240
Query 241 AGTTCTATTAGCATTACTGATGTCTGGGAGCCTACTGAGGAGGGT-TTGTTTCCGGTGGA 299
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 241 AGTTCTATTAGCATTACTGATGTCTGGGAGCCTACTGAGGAGGGTCTT-TTTCCGGTGGA 299
Query 300 GTTGACGCGCCATGTTTCCATGATTTCAATCACATTGTCATTGAGC-GAGCTAAACAAAG 358
|||||| ||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 300 GTTGACTCGCCATGTTTCCATGATTTCAATCACATTGTCATTGA-CTGAGCTAAATAAAG 358
Query 359 ATTCTCCTGGGTATCAAGCTCCAGCACAGTCAGATCAGTCTAAGCCTCAATATCAGCCAC 418
||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 359 ATTCTCCTGGGTATCAAGCTCCATCCCAAACAGATCAGTCTAAGCCTCAATATCAGCCAC 418
Query 419 AACAAGGGAGACAAGCCCGCCTACCATACAATGCTTATGGTGAAGA-------GG--GAG 469
|||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 419 AACAAGGGAGACAAGCCCGCCTGCCATACAATGCTTATGGTGAAGATTCTTATGGTCGAG 478
Query 470 --AG-G-TCGTGGCAGAGGGAGAAGCAGGGGAAGAGGTGGATATGGAAACTACCAAGGGA 525
|| | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 479 GGAGAGGTCGTGGCAGAGGGAGAGGCAGGGGAAGAGGTGGATATGGAAACTACCAAGGGG 538
Query 526 GTTATGAAGGAAAAGACCAAGGGAACTATCAAGAAGATTATCAAGACAATGA-AGG---T 581
||||||||||||||||||||||||||||||||||||||||||||| | || | | |
Sbjct 539 GTTATGAAGGAAAAGACCAAGGGAACTATCAAGAAGATTATCAAGGTA-TGTTATGCCAT 597
Query 582 GG--GTA-TTCAAACTCGGG-CAG----A----GGCCGTGGACGTGGTGGACGAAGCTAT 629
| | | |||| || | | | |||||||||||||||||||||||| ||
Sbjct 598 CGAAGAAGTTCATTCT-GTTTCCTCTTTATTTTGGCCGTGGACGTGGTGGACGAAGCCAT 656
Query 630 GGCTATCgtgg----g--t----gg----cagaggcgggtatggtggtgggagagatggt 675
||| ||||||| | | || ||||||||||||||||||| ||||||||||
Sbjct 657 GGCCATCGTGGTACTGGATATCAGGGTGGCAGAGGCGGGTATGGTGGTAGGAGAGATGGC 716
Query 676 ggatatggtggtgggagagatgacgggtatggggaAAGGAGAAATGACGGGTATGGGGAA 735
|||||||||| ||||||||||||||| ||||||| | ||||||| ||| |||||||| |
Sbjct 717 GGATATGGTGATGGGAGAGATGACGGATATGGGGGAGGGAGAAACGACAGGTATGGG-A- 774
Query 736 AGGAGAAATGACAGGTATGGTGGAGGAAGAGACGACGGGTATGGTGGAGGGAGAGATGAC 795
| | || ||| ||||| ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 775 -G-A-AAC-GACGGGTATAGTGGAGGCAGAAACGACGGGTATGGTGGAGGGAGAGATGAT 830
Query 796 GGATATGGTGGAGGCAGAAACGATGGATATGGGGGAAGAAGAGGCGGATTTCGTGGCGGT 855
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 831 GGATATGGTGGAGGCAGAAATGATGGGTATGGGGGAAGAAGAGGCGGATTTCGAGGCGGT 890
Query 856 CGTGGTGGAGGCAGAGATGAAGGATACGGTGGCGGCCGAGGTGGATATGGAGGTAGAAGT 915
| |||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||| ||
Sbjct 891 CATGGTGGAGGCAGAGATGAAGGATATGGTGGAGGCCGAGGTGGGTATGGTGGTAGAGGT 950
Query 916 GGCGGCCAAGGTGATGGGTATGGCGGAGGCAGAGGTGACGGGTATGGTGGAGGCAGAGGT 975
|| |||| |||||| |||||||| || ||||||||||| ||||||||||| |||||||||
Sbjct 951 GGAGGCCGAGGTGACGGGTATGGTGGCGGCAGAGGTGATGGGTATGGTGGCGGCAGAGGT 1010
Query 976 GACGGGTATGG---TGGAGGCAGAGGTGATGGCTATGGTGGTGGCCGAGTTGATAGGTAT 1032
|| || ||||| ||| |||||||||||||| ||||| |||||||||| |||| |||||
Sbjct 1011 GATGGTTATGGAGGTGGCGGCAGAGGTGATGGTTATGGAGGTGGCCGAGGTGATGGGTAT 1070
Query 1033 GATGG-AGGAAGACGTGATGGCTATGGTGGAGGCCGATATGATGGCTATGGTGGGGGTAA 1091
| ||| || | || ||||||| ||||| || |||||| | || ||||| ||
Sbjct 1071 GGTGGCAGCA-GAGGTGATGGTTATGGAGGTGGCCGAG--G-TG---ATGGT-----TA- 1117
Query 1092 AAGTGATGGTTATGGAGGTGGCCGAGGCGGATACCGTGGAGGTAGAGGCGGATATGGTCG 1151
||| || | ||| ||||||||||||||| |||| |||||| |||||||||||
Sbjct 1118 ---TGA-GG----G-AGG---CCGAGGCGGATACCGCGGAGTTAGAGGTGGATATGGTCG 1165
Query 1152 TGGACGTGGAAGGATGGGTAATGGTGGTCGTTCAAGGGATGGTGCTAGTAACCAAAACGA 1211
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1166 TGGACGTGGAAGGATGGGTAATGGTGGTCGTTCAAGGGGTGGGGCTAGTAACCAAAACGA 1225
Query 1212 AGCCTAA 1218
|||||||
Sbjct 1226 AGCCTAA 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5