BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07060.1
Length=2684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928372 jgi|Araly1|928372|scaffold_300829.1 3690 0.0
> Ahg928372 jgi|Araly1|928372|scaffold_300829.1
Length=2356
Score = 3690 bits (1998), Expect = 0.0
Identities = 2238/2354 (95%), Gaps = 15/2354 (1%)
Strand=Plus/Plus
Query 135 GTGAAGCCCACCATACAGAAATGTCTAACAGAAGCCTCCATTTGAAGAAAATATCATGGC 194
||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 GTGAAGCCCACGATACAGGAATGTCTAACAGAAGCCTCCATTTGAAGAAAATTTCATGGC 60
Query 195 TTTCTTCTCGGATTCTCTCAGACAATGTTCACGGTCGATTTCGCCGATCAATCACTACTC 254
|||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||
Sbjct 61 TTTCTTCTCGGATTCTCTCAGACAATGTGCACGGTCGATTTCGCCGACCAATTACTACTC 120
Query 255 CAGCCACTTGTTTAGCTCCTTCACTCGATGGAGACATGAACATTGGATCCAAGACATTGG 314
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 CAGCCACTTGTTTAGCTCCTTCACTCGATGGAGACATGAACATTGGGTCCAAGACATTGG 180
Query 315 TCGAACAAC-GTTTCTCTCGCGGATTTGCATCAGTACGACGAGTATCTCGAGcttcttct 373
|||||| || |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 TCGAAC-ACTGTTTCTCTCGCGGATTTGCATCAGTACGACGAGTATCTCGAG------CT 233
Query 374 tcttcttcttcttctCCTTCCTCTCCACATGTTGATTTGCTCTCTTTTATTAAAGCTTCA 433
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 234 TCTTCTTCTTCTTCTCCTTCCTCTCCACATGTTGATTTACTCTCTTATATTAAAGCTTCA 293
Query 434 CTTGATAAACTTGAAGGTCCTTCCCATCATTGGTTGAATCGAGACTTTGGGAATAAACAG 493
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 294 CTTGATAAACTTGAAGGTCCTTCCCATCATTGGTTGAATCGAGACATTGGGAATAAACAG 353
Query 494 CTTTTCAAGGACAAAGGAACTTATGTAGTTCTAGCTGGACATTTGCTAGACGGA-ACAAG 552
|||||||||||||||||||||||||||||||| ||||||||||||||| || || |||||
Sbjct 354 CTTTTCAAGGACAAAGGAACTTATGTAGTTCTTGCTGGACATTTGCTAAAC-GAGACAAG 412
Query 553 TGATCTGAGTGGTTTCTTTGAGAAACTAAAGTTGCTTCAGCAGAGGTCTCCGGGTGTCTG 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TGATCTGAGTGGTTTCTTTGAGAAACTAAAGTTGCTTCAGCAGAGGTCTCCGGGTGTCTG 472
Query 613 TTTCATGGGCATCCACTTCAGTGATCAAGCTCGAATCGCTGATGATCGAACTGCTCTAGC 672
||||||| |||| ||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 473 TTTCATGTGCATTCACTTCAGTGATCAAGCTCGAATTGCTGATGATCGAACTGCTTTAGC 532
Query 673 TGAGTTGATTTTGAAGGAATACCTCACTTTTCCTGTGCTACTTTCCGAAAAAGAATTTCC 732
|||||||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct 533 TGAGTTGATTGTGAAGGAATACCTCACTTTTCCTGTACTACTTTCTGAAAAAGGATTTCC 592
Query 733 CAAGACAAGTGGGGAAGTACGTTACATCGTGTTTAAAGATTTTAAGAATCCTCTAATCTA 792
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 593 CAAGACAAGTGGGGAAGTACGTTACATCGTGTTTAAAGATTTTAAGAATCCTTTAATCTA 652
Query 793 CGAAGAGAAGGATCTTGATATTGCTTCTGTAGTTAAAGCTCTTGACAGCCTCCTCACTCA 852
||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |||
Sbjct 653 CGAAGAGAAGGATCTCGATATTGCTTCTGTAGCTAAAGCTCTTGACAG---CCTCAGTCA 709
Query 853 AGATACTGAGAAATCCAAGTCTGTCAGACTTTTCACGAACACTTGGTCAAAACAAGCAGA 912
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 710 AGATACTGAGAAATCCAAGTCTGTCAGAATTTTCACGAACACTTGGTCAAAACAAGCTGA 769
Query 913 GGCTATCAAGGAATCACATTTCCCTTCTTTCTTTCAGGATTTGTTACTTTACTTTCCAGG 972
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 770 GGCTATCAAGGAATCACATTTCCCTTCTTTCTTTCAGGATTTGTTACTCTACTTTCCAGG 829
Query 973 TTGTATCTCTGCAGACGAAGTTGGAGACCGTCTGTTTCTTTCTGATACCAACCATCATCG 1032
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 830 TTGTATCACTGCAGACGAAGTTGGAGAACGTCTGTTTCTTTCTGATACCAACCATCATCG 889
Query 1033 TATTATTATTTTCGAAAACAGTGGGAAGATTGTAGACAGTATTGGTTGTTTCCCAGGTTT 1092
||| ||||| |||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 890 TATAATTATGTTCGAAAAGAATGGGAAGATTTTAGACAGTATTGGTTGTTTCCCAGGTTT 949
Query 1093 TGAGGATGGAGATTTTGAATCTGCAAAGATGTTACGTCCTACAGGGACCCTTTACGACGA 1152
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 950 TGAGGATGGAGAATTTGAATCTGCAAAGATGTTACGTCCTACAGGGGCCCTTTATGACGA 1009
Query 1153 AGCGGAGGATTGTCTTTACATTGTAGATTCTGAGAATCACGCCATTAGAAGAGCAAATAT 1212
|| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 AGAGGAGGATTGCCTCTACATTGTAGATTCTGAGAATCACGCCATTAGAAGAGCAAATAT 1069
Query 1213 AAATAGCCGGGTCCTGGAAACAGTATATCCAAAGGTTATTAAGAAAACTGGTGGCTTATG 1272
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1070 AAATAGCCGGGTCCTGGAAACAGTATATCCAAAGGTTATTAAGAAAAGTGGTGGCATATG 1129
Query 1273 GTCTTGGATAATGGAGAAAATGGGTCTTGGAAAAGATGACGATACAACAGTTGATGCTGA 1332
||||||| |||||||||||||||||||||||||||| || |||| |||||||||||||||
Sbjct 1130 GTCTTGGGTAATGGAGAAAATGGGTCTTGGAAAAGAGGATGATATAACAGTTGATGCTGA 1189
Query 1333 TACCAAATCAGAAGAATTTGATGCACGCTCTCTTTTGTTTCCATGGCATATACTGAAGCG 1392
| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1190 TGCCAAATCAGAAGAATTTGATGCTCGCTCTCTGTTGTTTCCATGGCATATACTGAAGCG 1249
Query 1393 TGACGATGAGAGTCTTTTAGTCATTAACAAAAGCTTTTCGAAGTTATGGATAATAAATTT 1452
| | |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1250 TAATGATGAGAGTCTTTTGGTCCTTAACAAAAGCTTTTCGAAGTTATGGATAATAAATTT 1309
Query 1453 TGCTTCAGGAGAGATCGAAGAAGTTGTGGAAGGGTTTTCGAAGATAATTGAGATCTGCGG 1512
||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1310 AGCTACAGGAGAGATCGAAGAAGTCGTGGAAGGGTTTTCGAAGATAATGGAGATCTGCGG 1369
Query 1513 TCAATCAATCACAGAGAAGCTATCAGTGTTGGAACATATGCCTTCTAACTGGTTGCAACA 1572
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1370 GCAATCAATCACAGAGAAGCTATCAGTGTTGAAACATATGCCTTCTAACTGGTTGCAACA 1429
Query 1573 GCAAACTGCGGCTATCGCCTCATTTAAGGAGCAGCCAAGTGCTTCCCTTTTGTCTTCTTT 1632
|||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1430 GCAAACTGAGGCTATCATCTCATGCAAGGAGCAGCCAAGTGCTTCCCTTTTATCTTCTTT 1489
Query 1633 TACTAAACTTGGAGACGACATTGTCATGACAGATATAGCTTGTCAGAGGGTGTTGAAGCT 1692
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1490 TACTAAACTTGGAGAAGACATTGTCATGACAGATATAGCTTGTCAGAGAGTTTTGAAGCT 1549
Query 1693 AAATAGAGATTCTGGAGCATGCTCTAGCATTCAATTCTCAAACAGTGGGATCCTTGGGTT 1752
||||| ||||||| ||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1550 AAATATAGATTCTAGAGCATGCTCTAGCATTCAGTTCTCAAACATTGGGATCCTTGGGTT 1609
Query 1753 GCCCTATTGGTTGTTCATTCCACTGGAGAGAGTTTTTAATCTAGCTAATGGAGTTCAGGA 1812
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1610 GCCCTATTGGTTGTTCATTCCACTGGAGAGAGTTTTCAATCTAGCTAATGGTGTTCAGGA 1669
Query 1813 AGCACATCTCAGTCATACTCAGGAACTCCGGTTATTGCCAGGTAAAATTAGCATACGGTT 1872
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1670 AGCACATCTCAGTCATACTCAGGAACTCCGGTTATTGCCAGGTAAAATTAGCTTACGGTT 1729
Query 1873 GAACATAGAGATTCCTCCATGCACGGAGCTTGTTGAACCGATACAAGAAAGCTGCATATG 1932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 GAACATAGAGATTCCTCCATGCACGGAGCTTGTTGAACCGATACAAGAAAGCTGCATATG 1789
Query 1933 GCGACAGACAAGAGGCGCAATCAGTGAATTCTCGAGTGCTGGAAGTGCAGTTGAACCTTC 1992
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1790 GCGACAGACAAGAGGCGCAATCAGTGAAGTCTCGAGTGCTGGAAGTGCAGTTGAACCTTC 1849
Query 1993 AGAAAAGATTGGAGTTTCACAACAATGGTATGATGAATTAGACAGCCTCGCCAAAGAAAT 2052
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 CGAAAAGGTTGGAGTTTCACAACAATGGTATGATGAATTAGACAGCCTCGCCAAAGAAAT 1909
Query 2053 AGCCAACCCTGAAGCAGCTGAGGAAGAGGAAGAAGAAGATGTTAACCCCTCTGAGGTTGA 2112
||||||||| || |||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct 1910 AGCCAACCCCGACGCAGTTGAGGAAGAGGAGGAGGAAGATGTTAACCCCTCTGAGGTTGA 1969
Query 2113 CAGAGAAGAAGATGGACGTATCCACATTGATTGTCCTGTCAAAACAAGTCCTGGCTCAAG 2172
|||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||
Sbjct 1970 AAGAGAAGAAGATGGACGTATTCACATTGATTGTACTGTCAAAACCAGTCCTGGCTCAAG 2029
Query 2173 TGAGCTTATTGTTTATGCAGCTTTGTATTTAAGACTAG-CGAGAAACGAAGAGACAGAAA 2231
|||||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 2030 TGAGCTTATTGTCTATGCAGCTTTGTATTTAAGACT-GTCGAGAAACAAAGAGACAGAAA 2088
Query 2232 GTGCGACCCAGGAAGAACTGGCGAGAAAAATAGCAAAGATTTTAAAGCCAGTACGGAACA 2291
|||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct 2089 GTGCGAGCCAGGAAGAACTGGCCAGAAAAATAGCAGAGATTTTAAAGCCAGTACGAAACA 2148
Query 2292 TTACAACTATGAAGGAAGATTTGTTTGTGAATTTGTTGTCCAAGTCAAAGAGAGAATTGA 2351
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2149 TTACGACTATGAAGGAAGATTTGTTTGTGAAACTGTTGTCCAAGTCAAAGAGAGAATTGA 2208
Query 2352 GAGACATTGTCTTCATAAAGCCGATGCATGTGCGGATAAGGTTAGACTCGAAGGATCATC 2411
|||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2209 GAGACATTGTCTTCTTGAAGCCGATGCATGTGCGGATAAGGTTAGACTCGATGGATCATC 2268
Query 2412 CAAAAGCCGATAACTCAAGAGACGTAATCTTGACTGACTCCTCTGTTGAGGTTGATGTCT 2471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2269 CAAAAGCCGATAACTCAAGAGACGTAATCTTGACTGACTCCTCTGTTGAGGTTGATGTCT 2328
Query 2472 CTCTCTGACAACGA 2485
|||| |||| ||||
Sbjct 2329 CTCTTTGACGACGA 2342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101243871210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5