BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07070.1
Length=1649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340899 jgi|Araly1|340899|fgenesh1_pg.C_scaffold_3000662 2067 0.0
> Ahg340899 jgi|Araly1|340899|fgenesh1_pg.C_scaffold_3000662
Length=1245
Score = 2067 bits (1119), Expect = 0.0
Identities = 1203/1245 (97%), Gaps = 0/1245 (0%)
Strand=Plus/Plus
Query 405 ATGAATTGCTTTTCATGTTTTTATTTCCATGAAAAGAAAAAGGTTCCAAGAGATTCAGAC 464
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGAATTGCTTTTCATGTTTTTATTTCCATGAAAAGAAAAAGGTTCCGAGAGATTCAGAT 60
Query 465 AACAGCTACCGGAGAAATGGGGAGGTGACCGGTAGAGACAACAACAAAACACACCCTGAG 524
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 61 AACAGCTACCGGAGAAATGGCGAGTTGACCGGTAGAGACAACAACAAAACACACCCTGAG 120
Query 525 AATCCAAAGACTGTAAATGAGCAGAACAAGAACAATGATGAAGACAAAGAAGTGACAAAC 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATCCAAAGACTGTAAATGAGCAGAACAAGAACAATGATGAAGACAAAGAAGTGACAAAC 180
Query 585 AACATTGCTGCTCAAACATTCAGCTTCAGGGAGCTAGCTACTGCAACTAAGAATTTCAGA 644
||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 181 AACATCGCTGCGCAAACATTCACCTTCAGGGAGCTAGCTACTGCAACCAAGAATTTCAGA 240
Query 645 CAAGAATGTCTGATCGGTGAAGGCGGCTTTGGAAGGGTTTACAAAGGCAAACTCGAGAAA 704
||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 241 CAAGAATGTCTCATCGGTGAAGGCGGGTTTGGAAGGGTTTACAAGGGCAAACTTGAGAAA 300
Query 705 ACCGGCATGATTGTGGCAGTGAAGCAATTAGATAGAAATGGATTGCAAGGGAACAAAGAG 764
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACCGGCATGATTGTTGCAGTGAAGCAATTAGATAGAAATGGATTGCAAGGGAACAAAGAG 360
Query 765 TTCATAGTAGAGGTCTTGATGTTAAGTCTTTTGCATCACAAGCATCTCGTGAATCTCATT 824
||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 361 TTCATCGTTGAGGTCTTGATGTTAAGTCTATTGCATCACAAGCATCTTGTGAATCTCATT 420
Query 825 GGGTATTGTGCTGATGGAGATCAGAGACTTCTCGTCTATGAGTACATGTCTCGCGGTTCA 884
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 421 GGGTATTGTGCTGATGGAGATCAGAGACTTCTAGTCTATGAGTACATGCCTCGCGGCTCA 480
Query 885 CTCGAAGATCATCTCCTCGATCTAACACCGGACCAAATACCGTTGGATTGGGACACAAGG 944
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 481 CTCGAAGATCATCTCCTCGATCTAACACCGGACCAAATACCATTGGATTGGGACACGAGG 540
Query 945 ATTAGAATCGCTCTAGGAGCCGCAATGGGTCTTGAATACTTGCATGACAAGGCAAATCCT 1004
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 ATTAGAATCGCTCTAGGAGCCGCAAAGGGTCTTGAATACTTGCATGACAAGGCAAATCCT 600
Query 1005 CCAGTGATCTACAGAGATCTCAAGGCAGCTAATATCCTTCTAGACGGTGAATTCAATGCC 1064
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 601 CCAGTGATCTACAGAGATCTCAAGGCAGCTAATATCCTTCTAGACAGTGAATTCAACGCC 660
Query 1065 AAGTTATCCGATTTCGGTCTGGCAAAGCTAGGCCCTGTCGGGGACAAACAACATGTGTCT 1124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGTTATCCGATTTTGGTCTGGCAAAGCTAGGCCCTGTCGGGGACAAACAACATGTGTCT 720
Query 1125 TCCAGAGTTATGGGAACTTACGGATATTGTGCTCCAGAGTATCAGAGAACCGGTCAGTTA 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCCAGAGTTATGGGAACTTACGGATATTGTGCTCCAGAGTATCAGAGAACCGGTCAGTTA 780
Query 1185 ACTACAAAATCCGATGTTTATAGCTTCGGAGTTGTGTTGTTGGAGTTGATAACTGGACGA 1244
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 ACTACTAAATCCGATGTTTATAGCTTCGGAGTTGTATTGTTGGAGTTGATAACTGGACGA 840
Query 1245 AGAGTTATTGATACTACCAGACCCAAAGATGAACAGAATCTAGTAACTTGGGCTCAACCG 1304
||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 841 AGAGTTATTGACACTACCAGACCCAAACATGAACAGAATCTAGTAACTTGGGCACAACCG 900
Query 1305 GTGTTCAAAGAACCGAGTAGATTCCCAGAGTTAGCGGATCCGAGTCTGGAGGGAGTGTTC 1364
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 901 GTGTTCAAAGAACCGAGTAGATTCCCGGAGTTGGCGGATCCGAGTCTGGAGGGAGTGTTC 960
Query 1365 CCGGAGAAAGCTCTGAATCAAGCGGTGGCAGTGGCAGCAATGTGTTTACAAGAAGAGGCA 1424
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 961 CCGGAGAAAGCTCTGAATCAAGCAGTGGCAGTCGCAGCAATGTGTTTACAAGAAGAGGCA 1020
Query 1425 ACGGTACGGCCACTCATGAGTGACGTTGTAACCGCTCTCGGTTTCTTAGGAACCGCTCCT 1484
|||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 1021 ACGGTACGGCCACTGATGAGCGACGTGGTAACCGCTCTAGGTTTCTTAGGAACCGCTCCT 1080
Query 1485 GACGGCTCAATCTCTGTTCCACACTACGATGATCCTCCTCAGCCGTCGGATGAAACGTCC 1544
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GACGGCTCTATCTCTGTTCCACACTACGATGATCCTCCTCAGCCGTCGGATGAAACGTCT 1140
Query 1545 GTGGAGGATTCAGTGGCAGCGGAAGAACGGGAAAGAGCCGTGGCTGAGGCAATGGAGTGG 1604
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GTTGAGGATTCAGTGGCAGCGGAAGAACGGGAAAGAGCCGTGGCTGAGGCAATGGAGTGG 1200
Query 1605 GGAGTTGCTTCAAGAGCACATTCCCGGAACCCAAGTGCTTCTTGA 1649
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GGAGTTGCTTCAAGAGCACATTCCCGGAACCCAAGTGCTTCTTGA 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61820467635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5