BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G07070.1 Length=1649 Score E Sequences producing significant alignments: (Bits) Value Ahg340899 jgi|Araly1|340899|fgenesh1_pg.C_scaffold_3000662 2067 0.0 > Ahg340899 jgi|Araly1|340899|fgenesh1_pg.C_scaffold_3000662 Length=1245 Score = 2067 bits (1119), Expect = 0.0 Identities = 1203/1245 (97%), Gaps = 0/1245 (0%) Strand=Plus/Plus Query 405 ATGAATTGCTTTTCATGTTTTTATTTCCATGAAAAGAAAAAGGTTCCAAGAGATTCAGAC 464 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 ATGAATTGCTTTTCATGTTTTTATTTCCATGAAAAGAAAAAGGTTCCGAGAGATTCAGAT 60 Query 465 AACAGCTACCGGAGAAATGGGGAGGTGACCGGTAGAGACAACAACAAAACACACCCTGAG 524 |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 61 AACAGCTACCGGAGAAATGGCGAGTTGACCGGTAGAGACAACAACAAAACACACCCTGAG 120 Query 525 AATCCAAAGACTGTAAATGAGCAGAACAAGAACAATGATGAAGACAAAGAAGTGACAAAC 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AATCCAAAGACTGTAAATGAGCAGAACAAGAACAATGATGAAGACAAAGAAGTGACAAAC 180 Query 585 AACATTGCTGCTCAAACATTCAGCTTCAGGGAGCTAGCTACTGCAACTAAGAATTTCAGA 644 ||||| ||||| |||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 181 AACATCGCTGCGCAAACATTCACCTTCAGGGAGCTAGCTACTGCAACCAAGAATTTCAGA 240 Query 645 CAAGAATGTCTGATCGGTGAAGGCGGCTTTGGAAGGGTTTACAAAGGCAAACTCGAGAAA 704 ||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||| Sbjct 241 CAAGAATGTCTCATCGGTGAAGGCGGGTTTGGAAGGGTTTACAAGGGCAAACTTGAGAAA 300 Query 705 ACCGGCATGATTGTGGCAGTGAAGCAATTAGATAGAAATGGATTGCAAGGGAACAAAGAG 764 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ACCGGCATGATTGTTGCAGTGAAGCAATTAGATAGAAATGGATTGCAAGGGAACAAAGAG 360 Query 765 TTCATAGTAGAGGTCTTGATGTTAAGTCTTTTGCATCACAAGCATCTCGTGAATCTCATT 824 ||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 361 TTCATCGTTGAGGTCTTGATGTTAAGTCTATTGCATCACAAGCATCTTGTGAATCTCATT 420 Query 825 GGGTATTGTGCTGATGGAGATCAGAGACTTCTCGTCTATGAGTACATGTCTCGCGGTTCA 884 |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 421 GGGTATTGTGCTGATGGAGATCAGAGACTTCTAGTCTATGAGTACATGCCTCGCGGCTCA 480 Query 885 CTCGAAGATCATCTCCTCGATCTAACACCGGACCAAATACCGTTGGATTGGGACACAAGG 944 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 481 CTCGAAGATCATCTCCTCGATCTAACACCGGACCAAATACCATTGGATTGGGACACGAGG 540 Query 945 ATTAGAATCGCTCTAGGAGCCGCAATGGGTCTTGAATACTTGCATGACAAGGCAAATCCT 1004 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 541 ATTAGAATCGCTCTAGGAGCCGCAAAGGGTCTTGAATACTTGCATGACAAGGCAAATCCT 600 Query 1005 CCAGTGATCTACAGAGATCTCAAGGCAGCTAATATCCTTCTAGACGGTGAATTCAATGCC 1064 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 601 CCAGTGATCTACAGAGATCTCAAGGCAGCTAATATCCTTCTAGACAGTGAATTCAACGCC 660 Query 1065 AAGTTATCCGATTTCGGTCTGGCAAAGCTAGGCCCTGTCGGGGACAAACAACATGTGTCT 1124 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 AAGTTATCCGATTTTGGTCTGGCAAAGCTAGGCCCTGTCGGGGACAAACAACATGTGTCT 720 Query 1125 TCCAGAGTTATGGGAACTTACGGATATTGTGCTCCAGAGTATCAGAGAACCGGTCAGTTA 1184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TCCAGAGTTATGGGAACTTACGGATATTGTGCTCCAGAGTATCAGAGAACCGGTCAGTTA 780 Query 1185 ACTACAAAATCCGATGTTTATAGCTTCGGAGTTGTGTTGTTGGAGTTGATAACTGGACGA 1244 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 781 ACTACTAAATCCGATGTTTATAGCTTCGGAGTTGTATTGTTGGAGTTGATAACTGGACGA 840 Query 1245 AGAGTTATTGATACTACCAGACCCAAAGATGAACAGAATCTAGTAACTTGGGCTCAACCG 1304 ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 841 AGAGTTATTGACACTACCAGACCCAAACATGAACAGAATCTAGTAACTTGGGCACAACCG 900 Query 1305 GTGTTCAAAGAACCGAGTAGATTCCCAGAGTTAGCGGATCCGAGTCTGGAGGGAGTGTTC 1364 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 901 GTGTTCAAAGAACCGAGTAGATTCCCGGAGTTGGCGGATCCGAGTCTGGAGGGAGTGTTC 960 Query 1365 CCGGAGAAAGCTCTGAATCAAGCGGTGGCAGTGGCAGCAATGTGTTTACAAGAAGAGGCA 1424 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 961 CCGGAGAAAGCTCTGAATCAAGCAGTGGCAGTCGCAGCAATGTGTTTACAAGAAGAGGCA 1020 Query 1425 ACGGTACGGCCACTCATGAGTGACGTTGTAACCGCTCTCGGTTTCTTAGGAACCGCTCCT 1484 |||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| Sbjct 1021 ACGGTACGGCCACTGATGAGCGACGTGGTAACCGCTCTAGGTTTCTTAGGAACCGCTCCT 1080 Query 1485 GACGGCTCAATCTCTGTTCCACACTACGATGATCCTCCTCAGCCGTCGGATGAAACGTCC 1544 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 GACGGCTCTATCTCTGTTCCACACTACGATGATCCTCCTCAGCCGTCGGATGAAACGTCT 1140 Query 1545 GTGGAGGATTCAGTGGCAGCGGAAGAACGGGAAAGAGCCGTGGCTGAGGCAATGGAGTGG 1604 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 GTTGAGGATTCAGTGGCAGCGGAAGAACGGGAAAGAGCCGTGGCTGAGGCAATGGAGTGG 1200 Query 1605 GGAGTTGCTTCAAGAGCACATTCCCGGAACCCAAGTGCTTCTTGA 1649 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 GGAGTTGCTTCAAGAGCACATTCCCGGAACCCAAGTGCTTCTTGA 1245 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61820467635 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5