BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07080.1
Length=1831
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478027 jgi|Araly1|478027|fgenesh2_kg.3__728__AT3G07080.1 2627 0.0
> Ahg478027 jgi|Araly1|478027|fgenesh2_kg.3__728__AT3G07080.1
Length=1803
Score = 2627 bits (1422), Expect = 0.0
Identities = 1700/1829 (93%), Gaps = 39/1829 (2%)
Strand=Plus/Plus
Query 1 GCTGTTTATCTGAATTCGATACC--tttttgttttttCTTTGGTAAATAAATATCTGATT 58
|||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 1 GCTGTTTATCTGAATTCGCTACCTTTTTTTGTTTTCTCTTTGGTAAATAAATATCTGATT 60
Query 59 TCGCTTTTGAATCGCCATTGGTTGAACAATTTGACGCCGATCT-AGATTTCTGTCGCTGT 117
|||||||||||||| ||||| ||||||| | |||||||| ||| | |||||||| |||||
Sbjct 61 TCGCTTTTGAATCGACATTGATTGAACAGTCTGACGCCGCTCTCA-ATTTCTGTAGCTGT 119
Query 118 GAAGGTAGTGTCCTGTTTTTC-CGATCAATTGGTTTGTTCCGATCGTTTCTCGTTTACGC 176
||||| ||||||||||||||| |||||| |||||||| | |||| ||||||||||||||
Sbjct 120 GAAGGCAGTGTCCTGTTTTTCTCGATCATTTGGTTTGGTGAGATC-TTTCTCGTTTACGC 178
Query 177 TTTTTGTTATCCTTGAGAAATTTTACGTTGCAAGAGAGATCTTTGATTCATGGGTGTTGA 236
|||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 179 TTTTTGTTCTCCTTGGGAAATTTTTCGTTGCAAGAGAGATCTTTGATTCATGGGTATTGA 238
Query 237 AGCATTCGTGTTAAAATGTATGATTGATCTTAATCAGTGAGATCGGTGAGCTCAAGTTCT 296
||||| || | ||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 239 AGCATCCGAGGTAAAACGTATCATTGATCTTAATCAGTGAGATCGGTGAGCTCAAGTTCT 298
Query 297 G-TGTTTTGTAATT-GAGA-TTCGAAGAGGTATGTCAACAAAGTTATGGAGATGGGTGTT 353
| | |||| | ||| || | ||||||||| ||||||||||||||||||||||||||| ||
Sbjct 299 GAT-TTTTCTTATTGGA-ATTTCGAAGAGATATGTCAACAAAGTTATGGAGATGGGTATT 356
Query 354 AGGGCTGATATACCTATTTGCCGTTGCCACGATTTGGATTGCGGCTAGTTTTGTAGTCCA 413
|||| |||| |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 357 AGGGTTGATGTACCTATTTGCCGTTGCCACGATTTGGATTGCAGCGAGTTTTGTAGTCCA 416
Query 414 GTCTGTGGTGGAAGCTGGTGTTTCTCCGTTCTTGATCACTTTCATTTGTAATTCATTGTT 473
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 417 GTCTGTGGTGGAAGCTGGTGTTTCTCCGTTCTTGATCACTTTCATCTGTAATTCATTGTT 476
Query 474 CGTTGTTTATCTTCCCCTTTTTGAGATTGGTCGATATCTGGAAGATGCATATGGGAGTTT 533
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 477 CGTTGTTTATCTTCCCCTTTTTGAGATTGGTCGATATCTCGAAGATGCATATGGGAGTTT 536
Query 534 ATTGTTCTGGAGAAGCAAAAGGTCGCATTTAATGGAACTGGTCGAATCAGAGAAGGCTGT 593
|||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 537 ATTGTTTTGGAGAAGCAAAAGGTCGCATTTAATGGAATTGGTTGAATCAGAGAAGGCTGT 596
Query 594 TTTGCTTGGAAAAGATGTTTCTGGTGTGAAATCAGATGCTACTGAGAG---TTCAGGGCT 650
|||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 597 TTTGCTTGGACAAGATGTTTCAGGTGTTAAATCAGATGCTACTGAGAGTTCTTCAGGGCT 656
Query 651 TGTTGTGAGAGAGCAAGAGATTAGTGAGGGTGGTAATGGGATTGAATCTGGATTGGAAAA 710
||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 657 TGTTGTGAGAGAGGAAGAGATTAGTGAGGGTGGTAATGGAATTGAATCTGGATTAGAAAA 716
Query 711 TATAGAGCTTGAGATTGATGCTAGTGTCAATGTTAGTGATGGAGCTAGTGGAGTTTCTAA 770
|||||||||||||||| ||| |||||||||||||||||||||||| |||||| |||||||
Sbjct 717 TATAGAGCTTGAGATTAATGGTAGTGTCAATGTTAGTGATGGAGCCAGTGGAATTTCTAA 776
Query 771 TAAAGGATTAGATGAGAAGGGTCGTTGGACAAGGATGCGAGTTGCTAAAGTTAGCCTTGT 830
|||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 777 TAAAGGGTTAGATGAGAAGGGACGTTGGACACGGATGCGAGTTGCTAAAGTTAGCCTTGT 836
Query 831 GATTTGTCCGTTTTGGTTTTTGGCGCAGCTTACATTTAATGTCTCTCTCAAGTACACAAC 890
|| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 837 TATATGTCCGTTTTGGTTTTTGGCACAGCTTACTTTTAATGTCTCTCTCAAGTACACGAC 896
Query 891 AGTTACGTCAAATACCATATTAAGCAGTGCATCAAGCCTTTTCACCTTTCTTGTTTCACT 950
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGTTACGTCAAATACCATCTTAAGCAGTGCATCAAGCCTTTTCACCTTTCTTGTTTCACT 956
Query 951 AATATTCTTGGGTGAGAAGTTCACATGGTTGAAACTCTTCAGCGTTCTTCTTTGTATGTC 1010
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 957 AATATTCTTGGGTGAGAAGTTCACGTGGTTGAAACTCTTCAGTGTTCTTCTTTGTATGTC 1016
Query 1011 TGGGACTATAATTGTAAGTATGGGTGACTCAGAGTCCAAGTCAAATGCAGTAGCTAAGAA 1070
||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 1017 TGGGACTATCATTGTAAGTATGGGTGACACAGAGTCCAACTCAAATGCAGTAGCTAAAAA 1076
Query 1071 CCCTCTTTTGGGAGATATTCTTTCGCTGGTCTCAGCGGCGCTGTATGCTGTCTACATCAC 1130
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1077 CCCTCTTTTGGGAGATATTCTTTCACTGGTCTCAGCTGCGCTATATGCTGTCTACATCAC 1136
Query 1131 TCTTATACGCAAAAAGCTTCCGGATGATGATGAAAGAAACGGCCGGGTCAGTATGGCTCA 1190
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 1137 TCTTATACGCAAAAAGCTTCCAGATGATGATGAAAGAAACGGTCGTGTCAGTATGGCTCA 1196
Query 1191 GTTCCTCGGGTTTCTTGGTCTCTTCAATTTCTTCATTTTCCTTCCTCCTGCTCTAATACT 1250
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1197 GTTCCTGGGGTTTCTTGGTCTCTTCAATTTCTTCATTTTCCTTCCTCCTGCTCTAATTCT 1256
Query 1251 CAACTTCACAAAGCGAGAACGCTTCAACGCACTTACCTTGAAACAATTTGGCCTAGTTGT 1310
|||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||
Sbjct 1257 CAACTTCACAAAGCGAGAACGCTTCAACACACTAACCTTGAAACAATTTGGTCTAGTTGT 1316
Query 1311 TGGCAAAGGTTTGTTAGATAATGTGCTTAGTGACTATCTGTGGGCAAAGGCAGTACTATT 1370
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1317 TGGCAAAGGTTTGTTAGATAATGTGCTTAGTGACTATCTGTGGGCAAAGGCAGTCCTATT 1376
Query 1371 GACAACAACCACTGTAGCTACAGCTGGGCTAACTATTCAGGTCCCATTGGCAGCCATTGT 1430
||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||||||
Sbjct 1377 GACAACAACCACTGTAGCTACGGCTGGGCTAACCATTCAGGTTCCACTGGCAGCCATTGT 1436
Query 1431 AGACAGCTTATCAGGGAACAAACCAAGCTTCACCGACTACATTGGTGCTGCAGCTGTTAT 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 AGACAGCTTATCAGGGAACAAACCAAGCTTCACCGACTACATTGGTGCTGCAGCTGTTAT 1496
Query 1491 GGTTGGCTTTGCAGGGATTAATATTCCCTCAGAGATGTTTTGCAAATCCAAAGAGACTGC 1550
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1497 GGTTGGCTTTGCAGGGATCAATATTCCCTCAGAGATGTTTTGCAGATCCAAAGAGACCGC 1556
Query 1551 TATTGAGTTAGAACCTGGGACTTCGTTCACAGATCCTCCTCCGATTGTGCCAGATAGCAT 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TATTGAGTTAGAACCTGGGACTTCGTTCACAGATCCTCCTCCGATTGTGCCAGATAGCAT 1616
Query 1611 AAGAGTAGATTCTTCACTGACTGTAGTATAAGCCTAAATTGTTC-CAAATTCAAAAGCCA 1669
|||||||||||||||| |||||||||||||| ||||| |||||| ||| |||||||||||
Sbjct 1617 AAGAGTAGATTCTTCATTGACTGTAGTATAATCCTAA-TTGTTCACAA-TTCAAAAGCCA 1674
Query 1670 CAATTCTTGTAAAATCttttttttttCTCTTGTTTACTGCTCTTTTCCTCTTTTATGATA 1729
|||| || | ||||| || ||||| || || ||| |||||| | ||||
Sbjct 1675 TAATT-TT-T-----CTTTTGTT---CTCTT-----CT-CT-TTT-CCTCTTCTGTGAT- 1715
Query 1730 ATTAATTTGTAGATCGTTGAACATAATACA-CGAAATACAGCTGAAGGCAATAGTGTAAT 1788
| |||||||||||||| |||||||||| | ||||||| |||||||||||||||||||||
Sbjct 1716 -T-AATTTGTAGATCGTCGAACATAATATATCGAAATATAGCTGAAGGCAATAGTGTAAT 1773
Query 1789 GAAATCGTTCAAGATTCTGGACTTAGTTT 1817
||||||||||||||||||||||| |||||
Sbjct 1774 GAAATCGTTCAAGATTCTGGACTCAGTTT 1802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68752892225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5