BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07090.1
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903601 jgi|Araly1|903601|Al_scaffold_0003_729 1218 0.0
Ahg478027 jgi|Araly1|478027|fgenesh2_kg.3__728__AT3G07080.1 145 8e-34
> Ahg903601 jgi|Araly1|903601|Al_scaffold_0003_729
Length=798
Score = 1218 bits (659), Expect = 0.0
Identities = 754/800 (94%), Gaps = 6/800 (1%)
Strand=Plus/Plus
Query 94 ATGGCTGAGGAAGCGCATAAGGTAACATTGAATGTCTATGATTTAAGCCAAGGCTTGGCA 153
|||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||
Sbjct 1 ATGGCTGAGGAAGCGCATAAGGTAACGTTGAATGTCTATGACCTCAGCCAAGGCTTGGCA 60
Query 154 CGCCAGCTCTCACAATCACTCCTGGGAAAGGTTATTGAAGGTGTATGGCATACAGGAATA 213
||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 61 CGCCAGCTCTCGCAATCACTCTTGGGAAAGGTTATCGAAGGTGTATGGCATACAGGAATA 120
Query 214 GTTGTCTATGGGAATGAGTACTTTTTTGGAGGAGGGATACAACATTTACCAGTTGGAAGA 273
||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||| ||
Sbjct 121 GTTGTCTATGGAAATGAGTACTTTTTTGGAGGAGGAATACAGCATTTGCCAGTTGGACGA 180
Query 274 ACTCCATATGGAACACCAATTCGAACGATAGAGTTGGGTCTATCACATGTGCCTAAAGAT 333
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 181 ACTCCATATGGAACACCAATTCGAACGATAGAGTTGGGTCTGTCACATGTTCCTAAAGAT 240
Query 334 GTATTCGAGATGTACTTGGAAGAAATCAGTCCTCGTTACACTGCTGAATCCTACAATTTA 393
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 241 GTATTCGAGATGTACTTGGAAGAAATCAGTCCTCGTTACACCGCTGAATCTTACAATTTA 300
Query 394 CTTACTCACAACTGCAACAACTTCAGCAACGAGGTCGCTCAGTTTTTGGTGGGTAAAGGG 453
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CTCACTCACAACTGCAACAACTTCAGCAACGAGGTCGCTCAGTTTTTGGTTGGTAAAGGG 360
Query 454 ATTCCTGACTACATTCTCCAGCTTCCTAATGATGTTCTAAACAGTCCCATGGGTGGTCTT 513
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 361 ATTCCTGACTACATTCTTCAGCTTCCCAATGATGTTCTAAACAGCCCCATGGGTGGTCTG 420
Query 514 ATAATGCCTATGTTGCAAGGCCTCGAAACAACTCTAAAGGCTGGTGCTGTTCCTCAAGTT 573
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 ATAATGCCTATGTTACAAGGCCTCGAAACAACTCTAAAAGCTGGTGCTGTTCCTCAAGTT 480
Query 574 CCACAGTTTAGGCCACAGCCACAACCTTTTGGAGCTTTTAGTAAAGATGATGGCCCACAA 633
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 481 CCACAGTTTAGGCCACAGCCACAACCTTTTGGAGCTTTTAGTAAAGATGAAGGTCCAAAA 540
Query 634 ATTGTGATAGC-TCCTAAGC-TCGAGGCAGCAGAAACCTCAACTGCAACTGAGAAAGTGC 691
||| || ||| || ||||| | |||||||||||||||||| ||||||| ||||||||||
Sbjct 541 ATTAAGAAAGCCTC-TAAGCCT-GAGGCAGCAGAAACCTCAGCTGCAACGGAGAAAGTGC 598
Query 692 CACCTGTTATTCAACCATCAGCTAGTAAAGAGAAGGTCAAGGACGACCCGTTGGGTGATG 751
|||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 599 CACCTGTTGTTCAACCATCAGCTAGTAAAGAGAAGGTGAAGGAGGACCCGTTGGGTGATG 658
Query 752 CTAGGGCCAAGATTCAGGAAGAGATTACAAGC-GAATTTGCAGCTCTAATGGCACAAGGC 810
|||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 659 CTAGGGCCAAGATTCAGGAAGAGATTACAA-CTGAATTTGCAGCTCTCATGGCACAAGGC 717
Query 811 ACATTACGAGCAAGTGAAGCAGCTGCTATGGCGACAAAAAGAGTCATGCAAAAGTACGGA 870
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 718 ACATTACGAGCAAGTGAAGCAGCAGCTATGGCGACTAAAAGAGTCATGCAAAAGTATGGA 777
Query 871 CATCTCAATGTAAACGCTTA 890
|||||||||||||| |||||
Sbjct 778 CATCTCAATGTAAATGCTTA 797
> Ahg478027 jgi|Araly1|478027|fgenesh2_kg.3__728__AT3G07080.1
Length=1803
Score = 145 bits (78), Expect = 8e-34
Identities = 100/110 (91%), Gaps = 4/110 (4%)
Strand=Plus/Minus
Query 934 AAACTAAGTCCAGAATCTTGAACGATTTCATTACACTATTGCCTTCAGCTGTATTTCG-T 992
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1802 AAACTGAGTCCAGAATCTTGAACGATTTCATTACACTATTGCCTTCAGCTATATTTCGAT 1743
Query 993 GTATTATGTTCAACGATCTACAAATTAATTATCATAAAAGAGGAAAAGAG 1042
|||||||||| ||||||||||||||||| | || || |||||||||||
Sbjct 1742 ATATTATGTTCGACGATCTACAAATTAATCA-CAGAA--GAGGAAAAGAG 1696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38923498257
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5