BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07110.2
Length=893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478031 jgi|Araly1|478031|fgenesh2_kg.3__732__AT3G07110.2 1288 0.0
Ahg930609 jgi|Araly1|930609|scaffold_303066.1 553 9e-157
> Ahg478031 jgi|Araly1|478031|fgenesh2_kg.3__732__AT3G07110.2
Length=796
Score = 1288 bits (697), Expect = 0.0
Identities = 766/799 (96%), Gaps = 5/799 (1%)
Strand=Plus/Plus
Query 1 TAATTTGAATAA-GCTGCTCACTTTTAATCACCCCGGAGTAGTAAGCTTGCGGCTGATCA 59
|||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TAATTTCAA-AACGCTGCTCACTTTTAATCACCCCGGAGAAGTAAGCTTGCGGCTGATCA 59
Query 60 GAGCTGAGTGAAAAATGGTGTCTGGATCAGGAATTTGCGCGAAGCGCGTGGTGGTTGATG 119
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 60 GAGCTGAGTG-AAAATGGTGTCTGGATCAGGAATTTGCGCGAAGCGAGTGGTGGTTGATG 118
Query 120 CTCGTCACCACATGCTAGGTCGCTTGGCTTCGGTTGTAGCAAAGGATCTGCTCAATGGCC 179
|||||||||||||||||||||||||||| ||| |||| |||||||| |||||||||||||
Sbjct 119 CTCGTCACCACATGCTAGGTCGCTTGGCCTCGATTGTGGCAAAGGAGCTGCTCAATGGCC 178
Query 180 AGAATATTGTGGTTGTCCGGTGCGAGGAGATTTGTCTCTCCGGCGGACTTGTTCGTCAGA 239
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 179 AGAAGGTTGTGGTTGTCCGGTGCGAGGAGATTTGTCTCTCCGGTGGACTTGTTCGTCAGA 238
Query 240 AGATGAAGTACATGAGGTTTCTCCGTAAGCGTATGAACACTAAACCTTCTCACGGACCTA 299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 AGATGAAGTACATGAGGTTTCTCCGCAAGCGTATGAACACTAAACCTTCTCACGGACCTA 298
Query 300 TTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGTATGATTCCACACA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGTATGATTCCACACA 358
Query 360 AGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGAGTTCCTACTC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGAGTTCCTACTC 418
Query 420 CATATGACAAGATCAAGAGGATGGTCGTTCCTGATGCTCTCAAGGTCTTGAGGCTGCAGG 479
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 419 CATATGACAAGATCAAGAGGATGGTCATTCCTGATGCTCTCAAGGTCTTGAGGCTGCAGG 478
Query 480 CTGGACACAAATACTGTCTGTTGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACG 539
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 479 CTGGCCACAAATACTGTCTGTTGGGTCGCCTTTCTTCTGAAGTCGGATGGAACCACTACG 538
Query 540 ACACCATCAAGCAGGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGCTGTTTATGAGA 599
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 539 ACACCATCAAGCAGGAGCTGGAGAACAAGAGAAAGGAAAGAGCTCAAGTTGTTTATGAAA 598
Query 600 GAAAGAAGCAACTTAGCAAACTCAGAGCTAAGGCCGAGAAGGTTGCTGAAGAGAAGCTTG 659
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 599 GAAAGAAGCAACTTAACAAACTCAGAGCCAAGGCCGAGAAGGTTGCTGAAGAGAAGCTTG 658
Query 660 GATCTCAATTGGATGTTCTTGCACCCGTCAAGTACTGAATTCAATCAGTTTATCGTATTT 719
||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| |||
Sbjct 659 GATCTCAATTGGAAGTTCTTGCACCAGTCAAGTACTGAATTCTATCGGTTTATCGTTTTT 718
Query 720 GAATGTTTT-TGCAAGTTTTGCTCAGACATTATACTATTATATTACGAGGTTTTGTTGTA 778
|||||||| | |||||||||||| ||||||||||||| ||||||||| ||| |||||||
Sbjct 719 GAATGTTTCCT-CAAGTTTTGCTCCGACATTATACTATCATATTACGAAGTTCTGTTGTA 777
Query 779 TGCGATTTTGACTTAGTTT 797
|||||||||||||||||||
Sbjct 778 TGCGATTTTGACTTAGTTT 796
> Ahg930609 jgi|Araly1|930609|scaffold_303066.1
Length=661
Score = 553 bits (299), Expect = 9e-157
Identities = 525/633 (83%), Gaps = 19/633 (3%)
Strand=Plus/Plus
Query 74 ATGGTGTCTGGATCAGGAATTTGCGCGAAGCGCGTGGTGGTTGATGCTCGTCACCACATG 133
||||||||||| ||||| || || | ||||| || |||||||| || |||||||| |||
Sbjct 21 ATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTTGTGGTTGACGCACGTCACCATATG 80
Query 134 CT-AGGTCG-CTTGGCTTCGGTTGTAGC-AAAGGATCTGCTCAATGGCCAGAATATTGTG 190
| ||||| ||| |||||| | ||| |||| || |||||||||| |||| | ||||
Sbjct 81 -TGTGGTCGTCTT-GCTTCGATCACAGCTAAAGAAT-TGCTCAATGGACAGAGTGTTGTC 137
Query 191 GTTGTCCGGTGCGAGGAGATTTGTCTCTCCGGCGGACTT-GTTCGTCAGAAGATGAAGTA 249
||||| || || |||||||||||| | || || || || ||||||||||||||||||||
Sbjct 138 GTTGTTCGATGTGAGGAGATTTGTTTGTCTGGTGG-TTTGGTTCGTCAGAAGATGAAGTA 196
Query 250 CATGAGGTTTCTCCGTAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCACTTCCG 309
|||||||||||| | || ||||||||||||||||||||||| || |||||||| |||||
Sbjct 197 CATGAGGTTTCTTAGGAAACGTATGAACACTAAACCTTCTCATGGTCCTATTCATTTCCG 256
Query 310 TGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGTATGATTCCACACAAGACTAAGCG 369
|||||| || ||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 257 TGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTCCACACAAGACCAAGCG 316
Query 370 TGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGAGTTCCTAC-TCCATATGACA 428
||| ||| ||| ||||| || |||||||| ||||| ||||| || || ||| |||||||
Sbjct 317 TGGTGCTGCTGCTCTTGCACGTTTGAAGGTTTTTGAGGGAGTACC-ACCTCCTTATGACA 375
Query 429 AGATCAAGAGGATGGTCGTTCCTGATGCTCTCAAGGTCTTGAGGCTGCAGGCTGGACACA 488
|| ||||||| |||||| ||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 376 AGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAGGCTGGTCACA 435
Query 489 AATACTGTCT-GTTGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATC 547
| ||||| || |||||| || |||||||||||||| || |||||||| || || |||||
Sbjct 436 AGTACTG-CTTGTTGGGACGTCTTTCTTCTGAAGTTGGCTGGAACCATTATGATACCATT 494
Query 548 AAGCAGGAGCTGGAGAACAAGAGAAAGGAAAGAG-CTCAAGCTGTTTATGAGAGAAAGAA 606
||| | |||| ||| || |||||||| || | | |||||||| |||||| | |||||
Sbjct 495 AAG--G-AGCTTGAGGTGAAAAGAAAGGAGAG-GTCACAAGCTGTGTATGAGCGTAAGAA 550
Query 607 GCAACTTAGCAAACTCAGAGCTAAGGCCGAGAAGGTTGCTGAAGAGAAGCTTGGATCTCA 666
|||||| | ||| ||||| || ||||||||||||||||| || ||||| |||||||| ||
Sbjct 551 GCAACTCAACAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAACTTGGATCCCA 610
Query 667 ATTGGATGTTCTTGCACCCG-TCAAGTACTGAA 698
| |||||||||||||| | | ||||||||||
Sbjct 611 GCTCGATGTTCTTGCACC-GATTAAGTACTGAA 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33090691956
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5