BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07120.1
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478032 jgi|Araly1|478032|fgenesh2_kg.3__733__AT3G07120.1 1971 0.0
> Ahg478032 jgi|Araly1|478032|fgenesh2_kg.3__733__AT3G07120.1
Length=1217
Score = 1971 bits (1067), Expect = 0.0
Identities = 1169/1219 (96%), Gaps = 4/1219 (0%)
Strand=Plus/Plus
Query 48 ATGCACGAGGTAACATTTCGATGCATGGAGTTAAATGTCAGCGTTAAAGAGCCGTAGTAA 107
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGCAAGAGGTAACATTTCGATGCATGGAGTTAAATGTCGGCGTTAAAGAGCCGTAGTAA 60
Query 108 CTCGTTAGCCGGACTAAGTCTAGACGCTGTGCTTGGCGGCGAGATCCTTATAGAACCGCC 167
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 61 CTCGTTAGCCGGACTAAGTCTAGACGCTGTGCTTGGCGGCGAGATCGTTATACAACCGTC 120
Query 168 ATCTCTACCGTCGCCACCACCTTTACCATCAAAATCTCTTGTACCGCACCGTC-CAACAA 226
||||| || ||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 121 ATCTCCCCCATCGCCACCACCTTTACCATCAAAATCTCTTGTACCGCACCG-CGCAACAA 179
Query 227 GCCAAACCCTTTTTGATATCATACGTGAGGAATACGCCAAAGAAGGGCACAAAGATCGGA 286
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 GCCAAACGCTTTTTGATATCATACGTGAGGAATACGCCAAAGAAGGGCACAAAGATCGTA 239
Query 287 CCACGTGGCAGATTTTCCGTGAGAAACTCCGTCTTAAACGAACCGGTTCTGCTTGGACCT 346
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 CCACGTGGCAGATTTTCCGTGAGAAACTCCGTCTCAAACGAACCGGTTCTGCTTGGACCT 299
Query 347 CGTCTCTTCATATCCCTGCTTCGGATATCCTTATCCCTAATCCCAAACACATTGGAACAG 406
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 300 CGTCTCTTCATATCCCTGCTTCGGATATTCTTATCCCTAATCCCAAACACCTTGGAACAG 359
Query 407 CGTTCCGGTCTCACTCCGCCGGTTTAAACATCCGAGATCTGGTTCACGCTATACCGATGT 466
||||||| || ||||||||||||||||||||||||||||||||| ||||| | || ||||
Sbjct 360 CGTTCCGATCACACTCCGCCGGTTTAAACATCCGAGATCTGGTTTACGCTGTTCCAATGT 419
Query 467 CAGATCCACCTGGTTCTTCAGGACGCGCTATGTTCACGCGCGGATCTTCAATGCGGGTCG 526
| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 420 CGGATCCACCTGGTTCTTCAGGACGCGCTATGTTCACACGCGGATCATCAATGCGGGTCG 479
Query 527 GGTCGAGTAAAAACCCGGACGATTCGCCTGACATCAGCGTTCTTGAAGATGGGCCACCGT 586
||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 480 GGTCGAGCAAAAACCCGGACGATTCGCCTGACATCAGCGTTCTTGGAGATGGACCACCGT 539
Query 587 CTAGGAGTTTTAAGCCGCAGTTATCACGGCACGATTCCGTTAGAGATCACAGCGAAGGCG 646
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 540 CTAGGAGTTTTAAGCCGCAGTTATCACGGCACGATTCCGTTAGAGATCACAGTGACGGCG 599
Query 647 AAGAAAACAACAGACGACGTCATCCGATCGTCACGTTCGTGGAAGAGAGACAAATGTCGG 706
||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 AAGAAGATAACAGACGACGTCATCCGATCGTCACGTTCGTGGAAGAGAGGCAAATGTCGG 659
Query 707 CGAGAGAAGCGGTTGCTGCTCAAGAAGCGGCGGAAGCTGAAGCGGCGGCGGCTGGAGGAA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGAGAGAAGCGGTTGCTGCTCAAGAAGCGGCGGAAGCTGAAGCGGCGGCGGCTGGAGGAA 719
Query 767 GCGAAGATGAAGACGACGATGACGAAGAGGATGATTCAGGAGAAACAGAGGAGATG-AAA 825
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 720 GCGAAGACGAAGACGACGATGACGAAGAGGATGATTCAGGAGAAACAGAGGAGA-GAAAA 778
Query 826 TCATCTTCAGCTTCTGAGCCGAAACAGACGATGTCTCTGATGGATCTGTTGGAAGAAACA 885
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCATCTTCAGGTTCTGAACCGAAACAGACGATGTCTCTGATGGATCTGTTGGAAGAAACA 838
Query 886 GATCGACAAATGGGATTAACAGGATCGAGATACGCCATGgatgaagatgaagagtacgaa 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GATCGACAAATGGGATTAACAGGATCGAGATACGCCATGGATGAAGATGAAGAGTACGAA 898
Query 946 gaagacgaagaagatgagaacaacgaggaagaaggagatagtcatggaggaggagaagga 1005
|||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||||
Sbjct 899 GAAGACGAAGAAGATGAGAATTACGAAGAAGAAGGAGATGGTCAAGGAGGAGGAGAAGGT 958
Query 1006 gagCTTAGTTGCTGCGTTTGCATGGTGAAAATAAAAGGCGCTTCTTTTACACCTTGTGGT 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GAGCTTAGTTGCTGCGTTTGCATGGTGAAAATAAAAGGCGCTTCTTTTACACCTTGTGGT 1018
Query 1066 CACACGTTTTGTAAGCTCTGTTCTAAAGAGCTTATGGCTCAGAAAGGTCACTGTCCTGTT 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CACACGTTTTGTAAGCTCTGTTCTAAAGAGCTTATGGCTCAGAAAGGTCACTGTCCTGTT 1078
Query 1126 TGCAGCAGCTTCGTTCTCGAGTTCCTTGAGATCttttagaaacaaattttgatacttttt 1185
|||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1079 TGCAGCAGCTTCGTCCTCGAGTTCCTTGAGATCTTTTAGAAACTAATTTTGAAACTTTTT 1138
Query 1186 gtttatttttggagaaattttgaaacttttatttttCTTGGGAGAAACTGTTACATGATC 1245
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GTTTATTTTTGGAGAAATTTTTAAACTTTTATTTTTCTTGGGAGAAACTGTTACATGATC 1198
Query 1246 AAAGTCCCAAAAATTTTAT 1264
||||||| ||| ||||||
Sbjct 1199 AAAGTCCTAAATCTTTTAT 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47234294163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5