BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07130.1
Length=1676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478033 jgi|Araly1|478033|fgenesh2_kg.3__734__AT3G07130.1 2588 0.0
> Ahg478033 jgi|Araly1|478033|fgenesh2_kg.3__734__AT3G07130.1
Length=1663
Score = 2588 bits (1401), Expect = 0.0
Identities = 1577/1663 (95%), Gaps = 7/1663 (0%)
Strand=Plus/Plus
Query 21 AACGATGACGTTTCTACTACTTCTACTCTTCTGCTTTCTCTCGCCGGCAATCTCCTCCGC 80
||||||||||||| |||||||||| ||||||||||||||||| |||||||||| || |||
Sbjct 1 AACGATGACGTTTTTACTACTTCTGCTCTTCTGCTTTCTCTCCCCGGCAATCTTCTTCGC 60
Query 81 CCACTCTATTCCGTCAACTTTAGATGGACCGTTCGTTCCGGTGACGGTGCCATTGGACAC 140
| ||||||| || ||||| || || |||||||||||||||||||||||||| || |||||
Sbjct 61 CGACTCTATCCCTTCAACGTTGGACGGACCGTTCGTTCCGGTGACGGTGCCGTTAGACAC 120
Query 141 CTCTCTCCGGGGGCAAGCCATCGATTTGCCCGACACCGATCCCCGCGTCCGCCGGCGTGT 200
|||||||||||| ||||||||||||| ||||| |||||||| ||||||||||| |||||
Sbjct 121 CTCTCTCCGGGGAAAAGCCATCGATTTACCCGATACCGATCCTCGCGTCCGCCGCCGTGT 180
Query 201 CATTGGTTTTGAGCCGGAGCAAAtctctctctccctctcctcCGATCATGATTCCATCTG 260
|| || || |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 181 CACCGGATTCGAGCCGGAGCAAATTTCCCTCTCCCTTTCCTCCGATCATGATTCCATCTG 240
Query 261 GGTCTCTTGGATCACAGGTGAGTTCCAAATCGGAAAGAAGGTGAAGCCATTAGATCCGAC 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTCTCTTGGATCACAGGTGAGTTCCAAATCGGAAAGAAGGTGAAGCCATTAGATCCGAC 300
Query 321 AAGTATCAACAGTGTTGTTCAATTCGGAACCTTGAGGCACTCACTGAGTCATGAAGCTAA 380
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 AAGTATCAAGAGTGTTGTCCAATTCGGGACCTTGAGGCACTCACTGAGTCATGAAGCTAA 360
Query 381 AGGACATTCACTTGTTTATAGTCAACTTTATCCTTTCGACGGTCTCCTTAACTACACTTC 440
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 361 AGGACATTCACTTGTTTATAGTCAACTTTACCCTTTCGACGGTCTCCTTAATTACACTTC 420
Query 441 TGGAATCATACACCATGTTCGCATTACAGGGCTGAAACCAAGTACTATCTATTACTATCG 500
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 TGGAATCATACACCATGTTCGCATTACAGGGCTGAAACCAAGTACTATATATTACTATCG 480
Query 501 ATGTGGAGATCCTTCAAGACGGGCTATGAGTAAGATACACCATTTCAGGACAATGCCTGT 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGTGGAGATCCTTCAAGACGGGCTATGAGTAAGATACACCATTTCAGGACAATGCCTGT 540
Query 561 TTCTAGTCCCTCGAGTTATCCTGGTCGAATAGCGGTTGTTGGTGATCTTGGTCTCACTTA 620
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 TTCTAGTCCCTCAAGTTATCCTGGTCGAATAGCGGTTGTGGGTGATCTTGGTCTCACTTA 600
Query 621 TAACACTACTGATACAATTAGTCACTTGATTCATAACTCTCCGGATCTCATTTTATTGAT 680
|||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 601 TAACACAACTGATACAATTAGTCACTTGATTCATAATTCTCCGGATCTTGTTTTATTGAT 660
Query 681 CGGCGACGTGAGTTATGCAAACTTGTATCTAACAAACGGGACTAGCTCTGATTGTTATTC 740
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 CGGCGATGTGAGTTATGCAAACTTGTATCTAACAAACGGGACTAGCTCCGATTGTTATTC 720
Query 741 TTGCTCTTTCCCTGAGACACCTATACATGAGACGTATCAGCCACGTTGGGACTACTGGGG 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGCTCTTTCCCTGAGACACCTATACATGAGACGTATCAGCCACGTTGGGACTACTGGGG 780
Query 801 TAGGTTTATGGAGAATCTGACTTCCAAAGTTCCTTTGATGGTGATTGAAGGGAACCATGA 860
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 781 TAGGTTTATGGAGAATCTGACTTCTAAAGTTCCTTTGATGGTCATTGAAGGGAACCATGA 840
Query 861 GATCGAATTGCAAGCAGAGAACAAGACATTTGAAGCTTATAGTTCAAGATTCGCTTTCCC 920
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 GATCGAATTGCAAGCCGAGAACAAGACCTTTGAAGCTTATAGTTCAAGATTCGCTTTCCC 900
Query 921 TTTTAATGAAAGCGGCTCGTCTTCTACGCTATATTATTCCTTTAACGCTGGTGGGATTCA 980
|||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 901 TTTTAAAGAAAGCGGCTCGTCTTCTACGCTCTATTATTCTTTTAACGCTGGCGGGATTCA 960
Query 981 CTTTGTTATGCTTGGTGCCTACATTGCGTATGACAAATCAGCGGAACAATATGAATGGTT 1040
|||||| ||||| |||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 961 CTTTGTCATGCTCGGTGCCTACATTGCTTATGACAAATCAGCGGAACAATACGAGTGGTT 1020
Query 1041 AAAGAAGGATTTGGCTAAAGTCGATAGATCGGTAACTCCATGGTTAGTAGCTTCTTGGCA 1100
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAAGAAAGATTTGGCTAAAGTGGATAGATCGGTAACTCCATGGTTAGTAGCTTCTTGGCA 1080
Query 1101 TCCACCTTGGTATAGTTCTTATACAGCGCATTACAGAGAAGCAGAATGTATGAAAGAAGC 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TCCACCTTGGTATAGTTCTTATACAGCGCATTACAGAGAAGCAGAATGTATGAAAGAAGC 1140
Query 1161 TATGGAGGAATTACTTTATTCTTATGGTACCGACATTGTCTTTAACGGACATGTGCATGC 1220
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1141 TATGGAGGAATTACTTTACTCTTATGGTACCGACATTGTCTTTAACGGACATGTTCATGC 1200
Query 1221 TTATGAACGGTCGAACAGAGTATACAATTACGAACTGGACCCATGTGGTCCAGTTTACAT 1280
||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 1201 TTATGAACGTTCGAACAGAGTTTACAATTACGAACTGGACCCGTGTGGTCCGGTTTACAT 1260
Query 1281 TGTGATTGGTGATGGAGGTAACCGTGAAAAGATGGCGATCGAGCATGCAGATGACCCCGG 1340
|||| |||||||||||||||||||||||||||||||||| ||||| || ||||| |||||
Sbjct 1261 TGTGGTTGGTGATGGAGGTAACCGTGAAAAGATGGCGATTGAGCACGCCGATGAACCCGG 1320
Query 1341 TAAATGTCCAGAGCCGTTAACCACGCCCGATCCAGTCATGGGTGGGTTTTGCGCGTGGAA 1400
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1321 TAAATGTCCTGAGCCGTTAACCACGCCGGATCCAGTCATGGGTGGGTTTTGCGCGAGGAA 1380
Query 1401 CTTCACGCCGTCTGATAAGTTCTGTTGGGATCGGCAACCTGATTATAGTGCCCTGAGAGA 1460
|||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1381 CTTCACCCCGTCTGGTAAATTCTGTTGGGATCGGCAACCTGATTATAGTGCCATGAGAGA 1440
Query 1461 AAGCAGCTTTGGCCATGGAATCCTAGAGATGAAGAACGAGACATGGGCACTATGGACATG 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AAGCAGCTTTGGCCATGGAATCCTAGAGATGAAGAACGAGACATGGGCACTATGGACATG 1500
Query 1521 GTATAGGAATCAAGACTCGAGCAGTGAAGTCGGAGATCAGATTTATATTGTGAGACAACC 1580
||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||
Sbjct 1501 GTATAGGAATCAAGACTCGAGCAGTCAAGTCGGAGATCAGATTTACATTGTCAGACAACC 1560
Query 1581 TGATCGATGTCCGCTTCACCACCGCCTTGTTAACCATTGCTAAG---A---T-CAAACAG 1633
|||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 1561 TGATCGATGTCCGCTTCACCACCGCCTTGTTAACCATTGCTAAGCTCAAAGTTCAAACAG 1620
Query 1634 AGATGGTCTAATAAAATTTTTGGGACTTTGATCATGTAACAGT 1676
|||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1621 AGATGGTCTAATAAAAGATTTAGGACTTTGATCATGTAACAGT 1663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62848904250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5