BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07140.1
Length=2126
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478034 jgi|Araly1|478034|fgenesh2_kg.3__735__AT3G07140.1 3182 0.0
> Ahg478034 jgi|Araly1|478034|fgenesh2_kg.3__735__AT3G07140.1
Length=2093
Score = 3182 bits (1723), Expect = 0.0
Identities = 1988/2112 (94%), Gaps = 33/2112 (2%)
Strand=Plus/Plus
Query 1 GGAGCTCAGCGTTTATACTCTGTAATGC-CAGATCCGCGGTAACGCAAGTCAGTGACCTA 59
||||||||||||| |||||||||||||| | ||||||||||||| |||||||||||||||
Sbjct 1 GGAGCTCAGCGTTAATACTCTGTAATGCTC-GATCCGCGGTAACACAAGTCAGTGACCTA 59
Query 60 CTCCGGCGTTTATCACTGAATCCGATTATGGCTAGTCTTCTTCGATCCTTAATCCTTTTG 119
|||||||| | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 CTCCGGCG--------T---TCCGATTATGGCTAGCCTTCTTCGATCCTTAATCCTTTTG 108
Query 120 CTAATCGTGCAATCATTTTTGGTTGCGATCGCTTTCGGGTCGAAAGAAGTTGAAGAATTC 179
|||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 109 TTAATTGTGCAATCGTTTTTGGTTGCGATCGCTTTTGGGTCGAACGAAGTTGAAGAATTC 168
Query 180 AGCGAGGCATTGCTCTTGAAGCCTTTACCTGATCGAAAAGTTTTAGCTCACTTCCACTTC 239
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 169 AGCGAGGCATTGCTCTTGAAGCCTTTGCCTGATCGAAAGGTTTTAGCTCACTTCCATTTC 228
Query 240 GAGAACCGAGCTCCTCCGTCAAACTCCCATGGCCGCCATCACCATCTCTTCCCGAAAGCT 299
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 229 GAAAACCGAGCTCCTCCTTCAAATTCCCATGGCCGCCATCACCATCTCTTCCCGAAAGCT 288
Query 300 ATTTCTCAGTTGGTTCAGAAGTTTCGGGTCAAGGAGATGGAGTTATCTTTTACTCAGGGT 359
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 289 ATTTCTCAGTTGGTTCAGAAATTCCGGGTCAAGGAGATGGAGTTATCTTTTACTCAGGGT 348
Query 360 CGATGGAACCATGAACATTGGGGAGGATTTGACCCTCTATCAAGTATGAATGCGAAGCCT 419
|| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 349 CGTTGGAATCATGAACATTGGGGAGGATTTGACCCTCTATCAAGTATGAACGCAAAGCCT 408
Query 420 GTTGGTGTGGAGCTGTGGGCTGTGTTTGATGTTCCTCAGTCTCAGGTTGATACTTCTTGG 479
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 409 GTTGGGGTGGAGCTGTGGGCTGTGTTTGATGTTCCTCATTCTCAGGTTGATACTTCTTGG 468
Query 480 AAGAACTTAACTCATGCACTGTCAGGGCTTTTCTGTGCTTCCATCAATTTTCTAGAATCT 539
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 469 AAGAACTTAACTCACGCACTTTCAGGGCTTTTCTGTGCTTCCATCAACTTTCTAGAATCT 528
Query 540 TCCACTTCATATGCTGCTCCTACATGGGGATTTGGACCC-AATTCTGACAAGCTGAGGTA 598
||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 529 TCCACTTCATATGCTGCTCCTACATGGGGATTTGG-CCCAAATTCGGACAAGCTGAGGTA 587
Query 599 TGGTTCACTGCCACGTGAAGCTGTTTGTACTGAGAACTTGACCCCATGGCTAAAGTTACT 658
||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 588 TGGTTCACTGCCACGGGAAACTGTTTGTACTGAGAACTTGACCCCATGGCTGAAGTTGCT 647
Query 659 TCCTTGTAGAGATAAGGATGGTATTTCTGCGTTAATGAATAGGCCATCTGTTTACAGAGG 718
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 648 TCCGTGTAGAGACAAGGATGGAATTTCTGCGTTAATGAATAGGCCATCTGTTTACAGAGG 707
Query 719 GTTTTATCATTCTCAGAGATTGCATTTATCCACGGTTGAATCTGGTCAAGAGGGATTGGG 778
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 708 GTTTTATCATTCTCAGAGATTGCATTTATCCACGGTTGAGTCTGGTCAAGAGGGATTGGC 767
Query 779 TTCTGGTATAGTGCTGGAGCAGACGCTTACTGTTGTTCTTCAGCCTGAGACTACTTCTGT 838
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 768 TTCTGGCATAGTGCTGGAGCAGACTCTTACTGTTGTTCTTCAGCCTGAGACTACTTCTGT 827
Query 839 TGAATCAAATATGCAGCCAAGTTGGTCCCTCAGCTCCCTCTTTGGGAGACAAGTTGTTGG 898
|||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 828 TGAATCAAATATGCAGCCAAGTTGGTCCCTCAGCTCCCTCTTTGGGCGAAAAGTAGTTGG 887
Query 899 GAGATGTGTTCTTGCAAAGTCAAGTAATGTGTATCTTCAATTGGAAGGTCTTCTTGGTTA 958
||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| |
Sbjct 888 GAGATGTATTCTTGCAAAGTCAAGTAATGTATATCTTCAATTGGAGGGTCTTCTTGGTCA 947
Query 959 CGAATCAAAAAACGTGGATACAGAAATAGAAGCACACCAACTATGGAAGAATGCAGAGTT 1018
||||| ||| ||| ||||||| ||||||||||||||| |||| |||||||||||||||||
Sbjct 948 CGAATTAAAGAACATGGATACGGAAATAGAAGCACACGAACTCTGGAAGAATGCAGAGTT 1007
Query 1019 TGAATTGTCTCTTAAGCCAGAGAGGGTTATTCGAGAAAGCTGCAGCTTTCTTTTTATTTT 1078
|||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||| ||
Sbjct 1008 TGAATTATCTCTTAAGCCAGACAGGGTTCTTCGAGAAAGCAGCAGCTTTCTTTTTATCTT 1067
Query 1079 TGATATTGACAAATCAAGTGACAGCGAGCCATTTGATCTTGGCCTTACTTGGAAGCGTCC 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1068 TGATATTGACAAATCAAGTGACAGCGAGCCATTTGATCTTGGCCTTACTTGGAAGCTTCC 1127
Query 1139 CTCAAAGTGGTCATGTCAACAAGCTCCATTACACTCGAGTCGGTTTTTGATGGGAAGCGG 1198
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1128 CTCAAAGTGGTCATGTCAACAAGCTCCATTACACGCAAGTCGGTTTTTGATGGGAAGCGG 1187
Query 1199 GAACGAAAGAGGTGCAATAGCCATCTTGTTAAAAGCGACAGAATCTCAGGAGAAGTTATC 1258
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GAACGAAAGGGGTGCAATAGCCATCTTGTTAAAAGCGACAGAATCTCAGGAGAAGTTATC 1247
Query 1259 AGGCAGAGATCTCACTAATGGCCAATGTACAATAAAAGCAAATATCTTCCAGATTTTCCC 1318
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 1248 AGGCAGAGATCTCACTAATGGCCACTGTACAATAAAAGCAAACATTTTCCAGATTTTCCC 1307
Query 1319 ATGGTATATTAAGGTTTATTATCATACTCTACAAATCTTTGTGGATCAACAACAGAAGAC 1378
|||||||||||||||||||||||||| ||||||||||||||| || |||||||||| |||
Sbjct 1308 ATGGTATATTAAGGTTTATTATCATAGTCTACAAATCTTTGTTGACCAACAACAGACGAC 1367
Query 1379 AGACAGTGAGGTCTTAAAGAAGATCAATGTCTCACCATCTACGGATAAGGTGTCATCTGG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 AGACAGTGAGGTCTTAAAGAAGATCAATGTCTCACCATCTACGGATAAGGTGTCATCTGG 1427
Query 1439 CATGATGGAGATGATGTTGGAACTACCATGTGAAGTGAAATCTGTAGCCATATCAATTGA 1498
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1428 CATGATGGAGATGATGCTGGAACTACCATGTGAAGTGAAATCTGTAGCCATATCAATCGA 1487
Query 1499 ATATGATAAGGGTTTTCTGCATATAGATGAATATCCTCCTGATGCTAATCAAGGATTCGA 1558
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 ATATGATAAGGGTTTTCTACATATAGATGAATATCCTCCTGATGCTAATCAAGGATTCGA 1547
Query 1559 CATTCCATCGGCTTTGATAAGCTTCCCCGATCATCATGCTAGTTTAGATTTCCAAGAAGA 1618
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1548 CATTCCATCGGCTCTGATAAGCTTCCCCAATCATCATGCTAGTTTAGATTTCCAAGAAGA 1607
Query 1619 GCTCAGCAACTCGCCCTTATTATCAAGTTTAAAGGAAAAATCCTTAGTACGCTCTTACAC 1678
||||||||| || ||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1608 GCTCAGCAAATCCCCCTTATTATCAAGTTTTAAGGAAAAATCTTTAGTTCGCTCTTACAC 1667
Query 1679 AGAAGTATTGCTCGTACCTTTGACAACCCCTGATTTTAGCATGCCTTACAACGTAATCAC 1738
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1668 AGAAGTATTGCTCGTACCATTGACAACCCCAGATTTTAGCATGCCTTACAACGTAATCAC 1727
Query 1739 GATCACATGCACCATCTTCGCATTGTATTTTGGATCATTGCTAAATGTTCTACGTAGACG 1798
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1728 GATCACATGCACCATCTTCGCATTGTATTTCGGATCATTGCTCAATGTTCTACGTAGACG 1787
Query 1799 AATTGGTGAAGAAGAAAGGTTTCTCAAAAGCCAAGCAGGAAAGAAAACAGGTGGGC---T 1855
||| || |||||||||||||||||||||||||||| | ||||||||||||||||| |
Sbjct 1788 AATCGGCGAAGAAGAAAGGTTTCTCAAAAGCCAAG--G-AAAGAAAACAGGTGGGCGGCT 1844
Query 1856 TAAGCAGTTATTATCGAGAATCACAGCCAAGATTAGAGGGAGACCAATTGAAGCACCATC 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1845 TAAGCAGTTATTATCGAGAATCACAGCCAAGATTAGAGGGAGACCAATTGAAGAACAATC 1904
Query 1916 ATCATCAGAA--GC-TG-A----A-TCTTCGGTCTTGTCTAGTAAACTTATCTTAAAAAT 1966
||||||||| || || | | ||||||||||||||||||||||||||||| |||||
Sbjct 1905 ATCATCAGAGTCGCCTGCAGCTCAATCTTCGGTCTTGTCTAGTAAACTTATCTTCAAAAT 1964
Query 1967 CATATTAGTTGCAGGAGCTGCTGCAGCGTGGCAATATTTTTCCACGGACGAGTAGGCTTA 2026
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1965 CATTTTAGTTGCAGGAGCTGCTGCAGCGTGGCAATATTTTTCCACGGACAAGTAGACT-A 2023
Query 2027 AAACTTTTGAAGAAATACCAGTTGTACCATATGTATCAACAAGGTAAtttttttGGGACC 2086
|| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 2024 AA-CTTT-GAAGAAATACCAGTTGTACCATATGTATCAACAAGGTAATTTTTTTTGGATC 2081
Query 2087 GTGTAAGATTTG 2098
||||||||||||
Sbjct 2082 GTGTAAGATTTG 2093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79989514500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5