BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07150.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340907 jgi|Araly1|340907|fgenesh1_pg.C_scaffold_3000670 828 0.0
> Ahg340907 jgi|Araly1|340907|fgenesh1_pg.C_scaffold_3000670
Length=579
Score = 828 bits (448), Expect = 0.0
Identities = 553/600 (92%), Gaps = 21/600 (4%)
Strand=Plus/Plus
Query 1 ATGGCGGGAGACTCAGGTCGGAGGAAGATCAAACTTTTCTGTCCCTCGGTATCGAAGATT 60
|||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCGGGAGACACAGCTCGGAGGAAGATCAAACTTTTTTGTCCCTCGGTATCGAAGATT 60
Query 61 GTGGAGTGGGTTGCTTGGAACGACGAGAAACTAGACTTTAGAGCCATAGCCGCAGCGTTT 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGGAGTGGGCTGCTTGGAACGACGAGAAACTAGACTTTAGAGCCATAGCCGCAGCGTTT 120
Query 121 GGGCTCGAACCATCAACGGTGAAGCTCAATGGTCACTTCATAAGCAGAGGTTTTGATCTA 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGGCTCGAACCATCGACGGTGAAGCTCAATGGTCACTTCATAAGCAGAGGTTTTGATCTA 180
Query 181 GTTGCCACTTGTGTGACGTGGCAGTCTTTGCTCACTTTCTTCTCTGCTAGAGGCTTGTCT 240
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 ATCGCCACTTGTGTGACGTGGCAGTCTTTGCTCACTTTCTTCTCGGCTAGAGGCTTGTCT 240
Query 241 ACTGGAAAACACGAAGCCGATGCTCTGCTAGTTCACGGCAAGCTCTCTAAACTCGGTACT 300
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTGGTAATCACGAAGCCGATGCTCTGCTAGTTCACGGCAAGCTCTCTAAACTCGGTACT 300
Query 301 AAAAGAGCACGCTCGGATCCTCTGGAGGACTTCGCCTGCAATGATCTTGGTCTAATCAAA 360
||||| |||| ||| ||||||| |||| | | | ||| |||||||
Sbjct 301 AAAAGGGCACACTCTGATCCTC---AGGA----G---G-A-----CTT-----AATCAAA 339
Query 361 ACGAAGAAGTTGAAAGATAAGTGCTCAGTTGGAGAATCACTGATCTCTGGATGCAACAAG 420
||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||
Sbjct 340 ACGAAGAAGTTAAAAGATAAGTGTTCAGTTGAAGAATCACTCATCTCTGGATGCAACAAG 399
Query 421 AGAAAGCTGTTGTCTGAAGATTCACACCCACTCAAGAAACTAAAACTCAACATGGATGAT 480
|||||||| |||||| ||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 400 AGAAAGCTATTGTCTCAAGATTCTCACTCGCTCAAGAAACTAAAACTCAACATGGATGAT 459
Query 481 AGTTTCGGAGGGAGCGGATCTAAAACGCCATTGAAATGCAGTTTCATGAGTGATAATGGT 540
||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 460 AGTTTTGGAGGGAGCGGTTCTAAAACGCCGTTGAAATGCAGTTTCATAAGTGATAATGGT 519
Query 541 CTGAAGAGGACAAGAGAAGATGATATGATTGCTTCTGCATCTTGTAAGAAGATAAGATGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 CTGAAGAGGACAAGAGAAGATGATATGATTGCTTCTGCATCTTGTAAGAAGATAAGATGA 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21977619264
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5