BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07170.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928387 jgi|Araly1|928387|scaffold_300844.1 1055 0.0
Ahg494934 jgi|Araly1|494934|fgenesh2_kg.8__750__AT5G48680.1 313 2e-84
Ahg952122 jgi|Araly1|952122|scaffold_38400001.1 130 2e-29
> Ahg928387 jgi|Araly1|928387|scaffold_300844.1
Length=652
Score = 1055 bits (571), Expect = 0.0
Identities = 625/651 (96%), Gaps = 4/651 (1%)
Strand=Plus/Plus
Query 217 TCATCCAAG-GGGAT-AAAGATGTATGCTGATAAATTGGAGGCTGAGTCTGGAAGCAGGA 274
||||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 TCATCCAAGAGAGATAAAAGATGTATGCTGATAAACTGGAGGCTGAGTCTGGAAGCAGGA 60
Query 275 AGGTCGTTAAGGATCGTATCAATGGCGGTTCTGGAGACATCTCTACTCGCGTGCGACAAG 334
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 61 AGGTCGTTAAGGATCGTATCAATGGCGGTTCTGGCGACATCTCTTCTCGCGTGCGACAAG 120
Query 335 TGACTGGGAAGAGGCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACA 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGACTGGGAAGAGGCAAAGGCAGGACGACAAATGGGAGCATGATCTTTTCAGTAGTGACA 180
Query 395 AACCTCAACTTTCAAATCGCAGGGTTGATCCTAGAGATCTTCGTTTGAAGCTCCAAAAGA 454
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 AACCTCAACTTTCAAATCGCAGAGTTGATCCTAGAGATCTTCGTTTGAAGCTCCAAAAGA 240
Query 455 GACATCATGGGTCTCAAAGTGGGCGAGAAGCTGGTTCAGGCGTGCGGGATTTACGGGATC 514
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GACATCATGTGTCTCAAAGTGGGCGAGAAGCTGGTTCAGGCGTGCGGGATTTACGGGAAA 300
Query 515 AGCTCTCTGGGACAATGAATCAGCAACCAAAAAACAGTGACCCACCAAAATCC-AAAGCG 573
||||||||||||||||||||| ||||||||||||||||||| | |||||| || ||||||
Sbjct 301 AGCTCTCTGGGACAATGAATCTGCAACCAAAAAACAGTGACGCGCCAAAA-CCTAAAGCG 359
Query 574 GAGGCTGCTAGGCCAAGTATGAAGAGCGTAGCGACTGAAACAGAGACTAGAAAAACTTCC 633
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 GAGGCTGCTAGACCAAGTATGAAGAGCGTAGCTACTGAAACAGAGACTAGAAAAACTTCC 419
Query 634 AGTCAAGCTACCAGGAAGAAATCACAGCAGGCTGATTCATCGGTTGATAGCTTTCTTGAA 693
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 420 ACTCAAGCTACCAGGAAGAAATCACAGCAGGCTGATTCATCTGTTGATAGCTTTCTGGAA 479
Query 694 TCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAAGTTGATATGGATGCT 753
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 TCATTGGGTCTAGAGAAATATTCAACAGCTTTTCAAGTGGAAGAAGTTGATATGGATGCT 539
Query 754 CTCATGCATATGACAGATGATGACCTCAAGGCTATGCTCATACCGATGGGTCCGAGGAAG 813
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 540 CTCATGCATATGACAGATGATGACCTCAAGGCCATGCTCATACCAATGGGTCCGAGGAAG 599
Query 814 AAGATACTTCTTGCTTTGGGATCTAAACCCTAAGAGCTTAGTGCCATCTAC 864
|||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 AAGATACTGCTTGCTTTGGGATCTAAACCCTAAGAGCTTAGTGCCTTCTAC 650
> Ahg494934 jgi|Araly1|494934|fgenesh2_kg.8__750__AT5G48680.1
Length=980
Score = 313 bits (169), Expect = 2e-84
Identities = 494/641 (77%), Gaps = 62/641 (10%)
Strand=Plus/Plus
Query 235 ATGTATGCTGATAAATTGGAGGCTGAGTCTGGAAGCAGGAAGGTCGTT-AAGGATCGTAT 293
|||||| | ||| || ||| |||||| || ||| ||| || ||||| ||| | || |
Sbjct 96 ATGTATTCAGATCAAGTGGTGGCTGAAACTAGAATCAGCAA-ATCGTTAAAGAACCGCCT 154
Query 294 CAATGGCGGTTCTGGAGACATCTCTACTCGC-G-----TGCGACAAGTGACTG-GGAAGA 346
|||||||| ||| || ||| ||||| ||||| | | |||||| || | ||||||
Sbjct 155 CAATGGCGCTTCCGGTGACGTCTCTTCTCGCGGCAAACAACAACAAGTCAC-GAGGAAGA 213
Query 347 G-GCAAAGGCAGGACGA-CA-AA-TGGGAGCATGATCTTTTCAG-T-A-G-TGACAAACC 398
| | ||||||||| || | || |||||||||||||||||| | | | | ||| ||
Sbjct 214 GAG-GAAGGCAGGATGATGATAAGTGGGAGCATGATCTTTTC-GATGACGACGACGTGCC 271
Query 399 TCAACTTTCAAATCGCAGGGTTGATCCTAGAGATCTTCGTTTGAAGCTCCAAAAGAGACA 458
|| |||||||| ||||| ||||||||| |||||| || |||||||||||||||| |||
Sbjct 272 TCGGCTTTCAAAACGCAGATTTGATCCTAAAGATCTCCGCTTGAAGCTCCAAAAGAAACA 331
Query 459 TCATGGGTCT-CAAA---GTGGGCGAGAAG-CT-GGTTCAGGCGTGC-GGGATTTACGGG 511
|||||| | | |||| |||| |||| | | | || | |||| | ||||| |||||
Sbjct 332 TCATGGCT-TGCAAATTGGTGGACGAG-TGTTTAGTTTGA-GCGT-CGGGGATCTACGGA 387
Query 512 ATCAGCTCTCTGGGACAATGAATCAGCAACCAAAAAACAGTGACCCACCAAAATCCAAAG 571
|| |||| || |||||| |||||| | | |||| || | || | | | | ||||
Sbjct 388 ATAAGCTATCCGGGACAGTGAATC--C-A-CAAACAA-A--GA---A-C--AGT-AAAAG 433
Query 572 CGGAGGCTGCTAGGCCAAG-TATGAAG-A-G-CGTA-GCG--ACTGAAA-CAGAGACTAG 623
|||||||| ||| || || ||| ||| | | | | | | || ||| | ||||||||
Sbjct 434 -GGAGGCTGTTAGACC-AGCTATAAAGAAGGTTGCAGGGGTAAC-CAAATCCGAGACTAG 490
Query 624 AAAAACTTCCAG-TCA-AGCT-ACCAGGAAGAAATCACAGCAGGCTGATTCATCGGTTGA 680
|| | ||| | || || | | || ||||||| |||||||| |||| ||||||||||
Sbjct 491 AACGGC-TCC-GAACAGAG-TAATCAAGAAGAAACCACAGCAGAATGATGCATCGGTTGA 547
Query 681 TAGCTTTCTTGAATCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAAGT 740
|||||| || |||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 548 TAGCTTCCTGGAATCATTGGGTCTCGAGAAATATTCGACCGCATTTCAAGTGGAAGAAGT 607
Query 741 TGATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCTATGCTCATACCGAT 800
||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 608 TGATATGGATGCTCTCAGGCATATGACAGATGATGACCTCAAAGCTCTGCTCATACCAAT 667
Query 801 GGGTCCGAGGAAGAAGATACTTCTTGCTTTGGGATCTAAAC 841
||| || |||||||||||||||||||| |||||||||||||
Sbjct 668 GGGACCTAGGAAGAAGATACTTCTTGCCTTGGGATCTAAAC 708
> Ahg952122 jgi|Araly1|952122|scaffold_38400001.1
Length=736
Score = 130 bits (70), Expect = 2e-29
Identities = 72/73 (99%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 729 AGTGGAAGAAGTTGATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCTAT 788
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 122 AGTGGAAGAAGTTGATATGGATGCTCTCATGCATATGACAGATGATGATCTCAAGGCTAT 181
Query 789 GCTCATACCGATG 801
|||||||||||||
Sbjct 182 GCTCATACCGATG 194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5