BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07190.1
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478041 jgi|Araly1|478041|fgenesh2_kg.3__742__AT3G07190.1 1478 0.0
Ahg952123 jgi|Araly1|952123|scaffold_38400002.1 311 8e-84
> Ahg478041 jgi|Araly1|478041|fgenesh2_kg.3__742__AT3G07190.1
Length=977
Score = 1478 bits (800), Expect = 0.0
Identities = 927/987 (94%), Gaps = 14/987 (1%)
Strand=Plus/Plus
Query 118 TTTTGTTTTCGTTTTAGCGTTTCCCGATCTGTGAATTGGGTATCAGCTCCAAAGGTTTAA 177
||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 1 TTTTGTTTTTGTTTTAGCGTTTCCCGATCTGGGAATTGGGTTTCAGCTCCAAAGGTGTAA 60
Query 178 TGCCCAGTAA-AGTTATCGAGGACGAGAGTTTAGGGGTCTTACAGTGCGAGTGAA-TTTA 235
||||||| || ||||| |||||||||||||||||| | |||||||||||||||| |||
Sbjct 61 TGCCCAG-AATTGTTATTGAGGACGAGAGTTTAGGGTTTTTACAGTGCGAGTGAATTTTT 119
Query 236 GATTAAAAGGTACAAACTTTACCTTTTGGTCGGAACTGGGAAGAGGGGGAATCGGACATG 295
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 120 GATTTAAAGGCACAAACTTTACCTTTTGGTCGGAACTGGGAAGGGGGGGAATCAGACATG 179
Query 296 ATTCAGTTACTATTCCTGGTTCTGTTCGTAGAAGGTGCGATTGCGTTCTTACTACTGGTA 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTCAGTTACTATTCCTGGTTCTGTTCGTAGAAGGTGCGATTGCGTTCTTACTACTGGTG 239
Query 356 AAGATTGGTCCTTTAAGGGAGCTTGTAATGAAGAGCTTAGACCAGCTTAAATTGGGGAAA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAGATTGGTCCTTTAAGGGAGCTTGTAATGAAGAGCTTAGACCAGCTTAAATTGGGGAAA 299
Query 416 CGTCCTGCTACTCTGAAAACCATCGCTGGAACCATGTCTGTGATCCTCCTGTCGAATCTC 475
||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 300 GGTCCTGCTACTGTGAAAACCATCGCTGGAACCATGTCTGTCATCCTCTTGTCGAATCTC 359
Query 476 ATGAATATCATTAAGATCCAGAACAAGGGTGCCAAACTTGGGACAATGTCTCCAATGGAT 535
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 360 ATGAATATCATCAAGATCCAGAACAAGGGTGCCAAACTTGGGACAATGTCTCCTATGGAT 419
Query 536 CAAGTCCTCTGGAGAACACACTTGCTCGAGGCTTCTCTTATGGGTGTTGTGCTCTTTTTT 595
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 CAAGTCCTCTGGAGAACACACTTGCTTGAGGCTTCTCTTATGGGTGTTGTGCTCTTTTTC 479
Query 596 GGCTTCATTATTGACCGGACACATCATTACCTCGAAAAGCTAATCACTTTAAGAAGCAAT 655
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 480 GGCTTCATCATTGACCGGACACATCATTACCTCGAAAAGCTTATCACTTTAAGAAGCAAT 539
Query 656 GTCGGGTCATCgaaaggagaactagaagaacttaggaaggagagaatcgaactgaaggag 715
||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||
Sbjct 540 GTCGGGTCATCGAAAGGAGAACTGGAACAACTTAGGAAGGAGAGAACCGAACTGAAGGAA 599
Query 716 aaagaagagaagaCATCCAAGGAAATTAAGCAGCTGAAAGAAAAACTGTCGTGTGTTTCA 775
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 600 AAAGAAGAGAAGACATCCAAGGAAATTAAACAGCTGAAAGAAAAACTGTCCTGTGTTTCA 659
Query 776 GAGAATCTCAAGAAA-CTAGAGAAGGAATCCAAAGAGAAAGAAACGAAGCTCGAAACAGC 834
|||||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 GAGAATCTGAAGAAAGC-AGAGAAGGAATCCAAAGAGAAAGAAACAAAGCTCGAAACAGC 718
Query 835 TGAAGCCCATGTCACAGCTCTCCAAAAGCAGTCTTCAGAGCTATTGTTGGAGTATGACAG 894
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGAAGCCCATGTGACAGCTCTTCAAAAGCAGTCTTCAGAGCTATTGTTGGAGTATGACAG 778
Query 895 ATTGCTAGAAGACAACCAAAATCTCCAAAGCCAGATTTTGGTTGGAACCAAGAAAACCTG 954
|||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||
Sbjct 779 ATTGCTAGAAGACAACCAGAATCTCCAAAGCCAGATTTTGGTAGGAACAAAAAAAACCTG 838
Query 955 AAGTGATTTAAGATTCTTAAGAGCTCTTTGATAGAGTTTTAGAGTGTTTTGTGAACGAAT 1014
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 839 AAGTGATATAAGATTCTTAAGAGCTCTTTGATAGAGTTTTAGAGTGTTT-GTAAACGAAT 897
Query 1015 GCGGAAATGGTAAGTGGCAACCAAGGAATTCTTGTACTCGttttttttttGCGCTCTTGG 1074
|||||||||| | | | | | ||||||||||||||||||| |||||||| |||||||
Sbjct 898 GCGGAAATGGCA--T--C--CGA-GGAATTCTTGTACTCGTTTATTTTTTGCTCTCTTGG 950
Query 1075 TTCCT-ACCCATTGATGCTGTCTTCCA 1100
||| | ||||||||||| |||||||||
Sbjct 951 TTCTTCACCCATTGATGATGTCTTCCA 977
> Ahg952123 jgi|Araly1|952123|scaffold_38400002.1
Length=242
Score = 311 bits (168), Expect = 8e-84
Identities = 200/215 (93%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 605 ATTGACCGGACACATCATTACCTCGAAAAGCTAATCACTTTAAGAAGCAATGTCGGGTCA 664
|||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ATTGACTGAACGCATCATTACCTCGAAAAGCTAATCACTTTAAGAAGCAATGTCGGGTCA 180
Query 665 TCgaaaggagaactagaagaacttaggaaggagagaatcgaactgaaggag-aaagaaga 723
|||||||||||||| ||| |||||||||||||||||| |||||||||| || ||||||||
Sbjct 179 TCGAAAGGAGAACTCGAACAACTTAGGAAGGAGAGAACCGAACTGAAG-AGGAAAGAAGA 121
Query 724 gaagaCATCCAAGGAAATTAAGCAGCTGAAAGAAAAACTGTCGTGTGTTTCAGAGAATCT 783
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 120 GAAGACATCCAAGGAGATTAAGCAGCTGAAAGAAAAGCTGTCCTGTGTTTCAGAGAATCT 61
Query 784 CAAGAAA-CTAGAGAAGGAATCCAAAGAGAAAGAA 817
|||||| | |||||||||| ||||||||||||||
Sbjct 60 GAAGAAAGC-AGAGAAGGAAGCCAAAGAGAAAGAA 27
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43155142044
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5