BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07195.1
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928390 jgi|Araly1|928390|scaffold_300847.1 1009 0.0
> Ahg928390 jgi|Araly1|928390|scaffold_300847.1
Length=718
Score = 1009 bits (546), Expect = 0.0
Identities = 657/711 (92%), Gaps = 6/711 (1%)
Strand=Plus/Plus
Query 57 GATCAAGAAATATGGCAAACCGTCCACACGTTCCGAAGTTTGGGGACTGGAACAACCAAG 116
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 10 GATCAAGAAATATGGCAAACCGTCCACACGTTCCAAAGTTTGGGGACTGGAACAACCAAG 69
Query 117 ACCAACCATTCACGGTCGTCTTTGACAACGCAAGGACGAACAAACGACAAGACTTGTATG 176
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 70 ACCAACCATTCACGGTGGTCTTTGACAACGCAAGGACGAACAAACGACAAGACTTGTACG 129
Query 177 AATCTATAGAGAAACCAGAGACCAAACCTCAAGAGCTAGCTCCTCCTCCTCCTCAGCCTG 236
||||||| |||||||| ||||||||||||||||| | ||||||||| |||||||||||||
Sbjct 130 AATCTATTGAGAAACCTGAGACCAAACCTCAAGAACAAGCTCCTCCGCCTCCTCAGCCTG 189
Query 237 CTCGTAGAATTCAAAAACCGGAAGCACCAAAACCGGTTAAGCAAGACACGCCGAGAGCAC 296
|| |||||| ||||| ||||||| | ||||||||||| ||| | ||||||||||||||||
Sbjct 190 CTAGTAGAAATCAAAGACCGGAACCCCCAAAACCGGTCAAGGAGGACACGCCGAGAGCAC 249
Query 297 CTCCACCAACCGaaaaaaaCAGAGTCAAAGCTCCACCGGCAGATCAACTCTACGGAGGCG 356
|||||||| | |||||||||||||||| |||||||||||| ||||||||||||| |||||
Sbjct 250 CTCCACCAGCGGAAAAAAACAGAGTCAGAGCTCCACCGGCGGATCAACTCTACGAAGGCG 309
Query 357 GGGGCAGTGGAGGCGGAGGCAGGAGTGGAAGTGGAAGCGCAGGTGGTCTTTATGGAGGTT 416
||||||| ||||||| ||||||||||||||||||| ||| |||||| || ||||||||||
Sbjct 310 GGGGCAGCGGAGGCGCAGGCAGGAGTGGAAGTGGAGGCGGAGGTGGACTATATGGAGGTT 369
Query 417 ATGGAGGCGGATCAGTCGGGAACCAACGGCAGCCACCAGCTCCTCGTCCTACGCAGCCTA 476
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 370 ATGGAGGCGGATCAGTCGGGAACCAGCGGCAGCCACCAGCTCCTCGTCCTGCGCAGCCTA 429
Query 477 GACAAAATCTCAGAGGCGGCAACAACGGAAGGGGAGGGACAACGATACCGCCATTCCCAG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GACAAAATCTCAGAGGCGGCAACAACGGAAGGGGAGGGACAACGATACCGCCATTCCCAG 489
Query 537 GATCAGTTGGTGCAgggggggACATGAGTTACACACAAATTTTCGAGAAAGTCAAAGAAG 596
||||| | |||||||||| | |||||||||||||||| |||||||| |||||||||||||
Sbjct 490 GATCACTAGGTGCAGGGGAGAACATGAGTTACACACACATTTTCGACAAAGTCAAAGAAG 549
Query 597 AGAGAAACGAAGGTGTCATCAGACCCAACGGAGGAACAGCCGGCAACACTCCTTCCCGCC 656
|||||||||||||||||| ||||| |||| ||||||||||| ||||||||||| ||||
Sbjct 550 AGAGAAACGAAGGTGTCA---GACCCTACGGCGGAACAGCCGGAAACACTCCTTCTCGCC 606
Query 657 CCATCAACAGTCAACATGATCAATCTACCAACCAAACCTC-T--TCCAAGGGCTGCTGCT 713
||||||||||||||||||||| |||| |||| |||||||| | |||| | ||||||||
Sbjct 607 CCATCAACAGTCAACATGATCCATCTCCCAAACAAACCTCCTCCTCCATGTTCTGCTGCT 666
Query 714 TCTCATGGTGCCGCAGGGGAAGTAAATATTGAAGACAATGTACATATTTAT 764
||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 667 TCTCATGGTGCCGCAAGGGATCTAAATATTGAAGACAATGTACATATTTAT 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34920591972
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5