BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07200.1
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928391 jgi|Araly1|928391|scaffold_300848.1 782 0.0
> Ahg928391 jgi|Araly1|928391|scaffold_300848.1
Length=591
Score = 782 bits (423), Expect = 0.0
Identities = 543/598 (91%), Gaps = 19/598 (3%)
Strand=Plus/Plus
Query 170 GTTAGCTTAACTC--TGTTGAAAGATGGCTTCTCGGGTGGTGAGGACTAGTATGAGACTT 227
||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1 GTTGGCTTAACTCTGTGTTGAAAGATGACTTCTCGGGTGGTGAGGACTAATATGAGACTT 60
Query 228 CGAAGGAGGGATGGTGTG-A-----CTCAAAACGAACACCAGGGAGATCAACAAGTGG-C 280
|||||||||||||||||| | |||||||||||||||| | | ||| || |
Sbjct 61 CGAAGGAGGGATGGTGTGAATGTGTCTCAAAACGAACACCA--G-G------AAG-GGAC 110
Query 281 TGACCAAGCTCCAACGGTGCCTCAGATTGTGGCTACTCCTCCTAGGATCAATGTGGTTGC 340
||| ||||||||||||||||||||||||||| |||||||||||||||||||| | |||||
Sbjct 111 TGAACAAGCTCCAACGGTGCCTCAGATTGTGTCTACTCCTCCTAGGATCAATATAGTTGC 170
Query 341 TATTGAAGATGATGATGATGTTGTTGAATCAACTGCTTCTGCTTTTGCTCAGGCTAAAAA 400
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 171 TATTGAAGATGATGATGATGTTGTTGAATCAACTGCATCTGCTTTTGCTCAGGCTAAAAA 230
Query 401 CAAATCGAGAAGTGCACGCAGAGGATCACAAGTAGTTGATGTGGAGTCAGCTGGTGCTAA 460
|||||||||||||||||||||||| | |||| ||||||| ||||||| ||| ||||
Sbjct 231 CAAATCGAGAAGTGCACGCAGAGGGCCTGTAGTACTTGATGTAGAGTCAGGTGGCACTAA 290
Query 461 TAGATCCACAAGGCGTCGCTCTGATCAAACTAGTGTTGACTCAGTTGAGCTTAACAAGCC 520
|||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 291 TAGAGGCACAAGGCGTCGCTCTGATCAAACTAGTGCTGACTCGGTTGAGCTTAACAAGCC 350
Query 521 GAGAAAGTCCAAGGCTGTGGCTCCTCCTGTAGAGGAACCAAAATTTAGCTGTCCAATCTG 580
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 351 GAGAAAGTCCAAGGCTGTGGCTCCTCCTGTAGAGGAACCAAAATTTAACTGTCCAATCTG 410
Query 581 TCTGTGTCCATTTACTCAGGAGGTTTCAACGAAATGTGGTCATATTTTCTGCAAAAAGTG 640
| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||
Sbjct 411 TTTGTGTCCATTTACTGAGGAGGTTTCAACGAAGTGTGGTCATATTTTCTGCAAAGCGTG 470
Query 641 CATAAAGAATGCGTTATCCCTCCAAGCTAAATGCCCGACATGTAGGaaaaaaaTCACTGT 700
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 471 CATAAAGAATGCGTTATCTCTCCAAGCTAAATGCCCGACGTGTAGGAAAAAAATCACTGC 530
Query 701 TAAGGACCTTATCCGGGTCTTCCTTCCAACCACCAGATGAATGATACAGAAACATCAC 758
|||||||||||||||||| ||||||||||| | |||||||| |||||||||||||||
Sbjct 531 TAAGGACCTTATCCGGGTATTCCTTCCAACTGCTAGATGAATCATACAGAAACATCAC 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34234379466
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5