BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07210.1
Length=2179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928392 jgi|Araly1|928392|scaffold_300849.1 2680 0.0
> Ahg928392 jgi|Araly1|928392|scaffold_300849.1
Length=1681
Score = 2680 bits (1451), Expect = 0.0
Identities = 1599/1670 (96%), Gaps = 11/1670 (1%)
Strand=Plus/Plus
Query 332 CAATGGGAGTGATATTGGACTCATGGTGCTTTTGTAAAGGAGTTGGCAAAAGCGAGAAGA 391
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 19 CAATGGGAGTGATATTGGACTCATGGTGCTTTTGTAAAGGAGTAGGCAAAAGCGAGAAGA 78
Query 392 TGAAAGGTTCCATTTT-TACCGGCAAAGCTCCGGCGATGGCTCGAATCTCTGTCTCCGGA 450
|||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 79 TGAAAGCTTCCATTTTCT-CCGGCAAAGCTCCGGCGATGGCTCGAATCTCTGTCTCCGGA 137
Query 451 CCAAATGGTGTTACTTCTGGAACTGGATTCCTCATTCACCGGAATCTTCTTCTGACCACT 510
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 138 CCAAATGGTGTTACTTCCGGCACCGGATTCCTCATTCACCGGAATCTTCTTCTGACCACT 197
Query 511 CACCTCAATCTTCCTTCCATCTCCGCCACCGAAACCGCCGAGGTCCGCCTTCAGAACGGT 570
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 198 CACCTCAATCTCCCTTCCATCTCCGCCACCGAAACCGCCGAGGTCCGCCTCCAGAACGGT 257
Query 571 GTCGCTGCTGCTCTCTTCCCTCACAGGTTTTTCATTACGAGTTCAGTTATTGATCTCACT 630
||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 258 GTCGCCGCCGCTCTCTTCCCTCACAGGTTTTTCATTACAAGTTCGGTTATTGATCTCACT 317
Query 631 ATTGTTGGCTTAGACCTTGTTGATGGAGACTCAAGTTCCCAGAGCC-AACTTCAACAACA 689
||||||||||||||||| |||||||||||||||| ||||||||||| ||| | |||||
Sbjct 318 ATTGTTGGCTTAGACCTCGTTGATGGAGACTCAAATTCCCAGAGCCAAAC--C--CAACA 373
Query 690 ACCACATTACCTGAAGACATGTTCCAAACCAAACCTGGATCTAGGGAGTGTGGTGTACCT 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 ACCACATTACCTGAAGACATGTTCCAAACCAAACCTGGATCTAGGGAGTGTGGTGTACCT 433
Query 750 CTTAGGCTATGCCAATCAGAATGAACTCAAGATCGGCGAGGGAAAGTTAGTTGTAGCTAC 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 CTTAGGCTATGCCAATCAGAATGAACTCAAGATCGGCGAGGGAAAGTTAGTTGTAGCTAC 493
Query 810 CGACAATCTCATCAAACTCTCAACTGATGAAATGATTTGGAGTCCTGGATCTGCTGGATT 869
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 494 CGACAATCTCATCAAGCTCTCGACTGATGAAATGATTTGGAGTCCTGGATCTGCTGGATT 553
Query 870 TGATGTTCAAGGGAATCTTGCATTCATGATTTGTGATCCGAGGAAACTATCGACATCACC 929
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 554 TGATGTTCAAGGGAATCTCGCATTCATGATCTGTGATCCGAGGAAACTATCGACATCACC 613
Query 930 AACCTCAACCTCGTCATCTTCCTCTTCTTCTTTGAAGAAAGATAACAACAAGACACTGAT 989
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 614 AACCTCAACCTCGACATCTTCCTCTTCGTCTTTGAAGAAAGATAACAACAAGACACTGAT 673
Query 990 GATGCAGTTTGGTATACCAATACCAGTAATATGTGACTGGCTGAATCAGCATTGGGAAGG 1049
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 674 GATGCAGTTTGGTATACCAATACCAGTAATCTGTGACTGGCTGAATCAGCATTGGGAAGG 733
Query 1050 TAGTTTGGATGAACATACGACGAAA-CCTAAGTTGCCTCTCATTCGATTAATGTCTTCTG 1108
||||||||||||||||||| | ||| || ||||||||||| ||||| |||||||||||||
Sbjct 734 TAGTTTGGATGAACATACGTC-AAAGCCCAAGTTGCCTCTTATTCGGTTAATGTCTTCTG 792
Query 1109 GTCAGAAGAGTGAGCGTTCTTGTACTTCATTCACCATGCGCCGTGTTTTCAAGCCAAACG 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GTCAGAAGAGTGAGCGTTCTTGTACTTCATTCACCATGCGCCGTGTTTTCAAGCCAAACG 852
Query 1169 ACTCTGCTGATGTTGGAACACCATCTTCATCTAACACTAGAGATCAAACTCATCCGAGCT 1228
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 853 ACTCGGCTGATGTTGGAACGCCATCTTCATCTAACACTAGAGATCAAACTCATCCGAGCT 912
Query 1229 CTTCTATCGCTGCTGAGGAAGAAAAAGAAGAAGAAACCTCAAAAACCAATCCACAAGTCT 1288
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 913 CTTCCATCGCTGCTGAGGAAGAAAAAGAAGAAGAAACCTCAAAAACCAATCCACAAGGCG 972
Query 1289 GCGGAACTACTACTCATGCGCAGGGTATCCCTACCCCTGAGATATATGAATCGCCAAAGT 1348
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 973 GCGGGACTACTACTCATGCACAGGGTATCCCGACCCCTGAGATATATGAATCGCCAAAGT 1032
Query 1349 TGACTTCTGGTCCTCTAAGAAATGAGACAGCTCAAGTACACCTTTTGGACATCAACTTTC 1408
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1033 TGACTTCTGGTCCTTTAAGAAATGAGACAGGTCAAGTACACCTTTTGGACATCAACTTTC 1092
Query 1409 CTCCACGGATACCTAAAGCTATAACCTTTCATCCTGAGCTCAACTCTCTACAGAGTAACC 1468
||||||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||
Sbjct 1093 CTCCACGGATACCTAAAGCTACAACCATTCTTCCTGAGCTCAACTCTCTACAGGGTAACC 1152
Query 1469 ATATAGTGGAAGAGGCTGAGATTGTCTCTGAAGGATCAGATGCGCAGATTGCTTCGACAG 1528
| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1153 ACGTAGTGGAAGACGCTGAGATTGTCTCTGAGGGATCAGATGCGCAGATTGCTTGGACAG 1212
Query 1529 GTTCAGTAAATGGTGCTCTCAGTGAGGTCATCTCAAGTTCACCGCCAG-CAGCAGCTCAC 1587
|||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 1213 GTTCAGTAAACGGTGCTCTCAGTGAGGTCATCTCAAGTTCACCGCCAGTC-GCAGCACAC 1271
Query 1588 TATGTATATAACAATCATGGATACAGCAGCGAGGAAGAGACAATGTATTCTGCAGAAACA 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 TATGTATATAACAATCATGGATACAGCAGCGAGGAAGAGACAATGTATTCTGCAGAAACA 1331
Query 1648 GCAGAAAGCCGAAACTACCCAACTCCTCCAAGAAAAAGCGAGTTTCATCATGAGAGAGTT 1707
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1332 GCAGAAAGCCGAAACTACCCAACTCCCCCAAGAAAAAGCGAGTTTCATCATGAGAGAGTT 1391
Query 1708 GGAAGGAGTCAAAGCTGTGTGAGCTCCAGCAGATGGGGAACTCCTCAGAAGAGTTTGAAT 1767
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1392 GGAAGGAGCCAAAGCTGTGTGAGCTCCAGCAGATGGGGAACTCCTCAGAAGAGTTCGAAT 1451
Query 1768 GGTAGAAGAGAAATGCTGGAGAAACAGAGAAGCTTCGTCCATGGGAAGAAGATGCATTCA 1827
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1452 GGTAGAAGAGAAATGCTGGAGAAACAGAGAAGCTTCGTCCATGGAAAGAAGATGTATTCA 1511
Query 1828 CAAGGAGCAATGTCACAGAGGAGTAATGACTATTACAGCCCAACGGTCTCATCTATCATG 1887
|||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1512 CAAGGAACAATGTCACAGAGGAGTAATGACTATTACAGCCCAACTGTCTCATCCATCATG 1571
Query 1888 AAGAAAAGGATTAATAGTTCAGAGCAACAGATTATCAAACCGGTACCTAGACCTAGAGCT 1947
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1572 AAGAAAAGGAACAATAGTTCAGAGCAACAGATTTTCAAACCGGTACCTAGACCTAGAGCT 1631
Query 1948 GTTAGTTCTTCACCAAGATGGGCGTTCTAAGGTCGATACAGACCGGAGAA 1997
||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 1632 ATTAGTTCTTCACCAAGATGGGCGTTCTGAGATCGATACAGACCCGAGAA 1681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82008297485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5