BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07220.1
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478044 jgi|Araly1|478044|fgenesh2_kg.3__745__AT3G07220.1 1825 0.0
Ahg317584 jgi|Araly1|317584|fgenesh1_pm.C_scaffold_3000600 1321 0.0
Ahg899936 jgi|Araly1|899936|Al_scaffold_0004_586 898 0.0
> Ahg478044 jgi|Araly1|478044|fgenesh2_kg.3__745__AT3G07220.1
Length=1216
Score = 1825 bits (988), Expect = 0.0
Identities = 1150/1225 (94%), Gaps = 24/1225 (2%)
Strand=Plus/Plus
Query 1 TCGATTCACAAATTATTACGATTG------C-AATCCCTAATTTGGAAGTCCCGGTTCCT 53
||| |||| ||||||||||||||| | |||||||||||| |||||||||| | |
Sbjct 1 TCGTTTCAGAAATTATTACGATTGCAATCCCTAATCCCTAATTTAGAAGTCCCGG-TGCG 59
Query 54 CTTTCGATCAAATCGGAGAATTTCACGGCATGGCTACGGCTGTTGGTGGCGGAAGCGATG 113
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 60 CTTTTGATCAAATCGGCGAATTTCACGGCATGGCTACGGCTGTTGGAGGCGGAAGCGATG 119
Query 114 TGGAGGTTGGATTTGCGAAGCTTCAAGGTGAGGATTTCGAGTACTATATGCAGTCTTACT 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 120 TGGAGGTTGGATTTGCGAAGCTTCAAGGTGAGGATTTCGAGTACTATATGCAGTCGTACT 179
Query 174 CCATTATACTCGGCCGGAATTCTAAGAAAGCCACCGTCGACGTTGATCTCTCATCCCTCG 233
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 CCATTATACTCGGCCGGAATTCTAAGAAAGCGACCGTCGACGTTGATCTCTCATCCCTCG 239
Query 234 GCGGTGGGATGAACATCTCGCGCAACCACGCTCGGATCTTCTATGACTTCACTA-GACGA 292
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 240 GCGGCGGGATGAACATTTCGCGCAACCACGCTCGGATCTTCTATGACTTCAC-ACGACGC 298
Query 293 CGCTTCTCTCTCGAGGTCCTTGGCAAAAATGGCTGCCTCGTTGAAGGTGTTCTTCATCTC 352
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 299 CGCTTCTCTCTCGAGGTCCTTGGCAAAAATGGCTGCCTCGTTGAAGGTGTCCTCCATCTC 358
Query 353 CCTGGGAATCCTAACGTCAAGCTCGATTCACAAGACCTTTTGCAGATCGGAGACAAAGAG 412
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 359 CCTGGGAATCCTAACGTCAAGCTCGATTCCCAAGACCTTTTGCAGATTGGTGACAAAGAG 418
Query 413 TTCTACTTTCTCCTACCGGTTCGGAGCATCTTAGGCGGGCCGTTGGGACCTAGGCACCAC 472
|| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 419 TTTTACTTTCTCCTTCCGGTTCGGAGCATTTTAGGCGGGCCATTGGGACCTAGGCACCAC 478
Query 473 GTCTCTGGGCAAACAAGTGTTGTTCCATACCATAATTATCAGTCGGGTCCAGGTTCTGGG 532
||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 479 GTCTCAGGGCAAACTAGTGTTGTTCCATACCATAATTATCAGTCAGGTCCGGGTTCTGGG 538
Query 533 TCGGGTAAGAAGGGCGTCAGGAGTAGAGAGTTGTatgagtacgatgatgaagatgatgat 592
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCGGGTAAAAAGGGTGTCAGGAGTAGAGAGTTGTATGAGTACGATGATGAAGATGATGAT 598
Query 593 gacgacgacgatgaggaggacgatatgagagGAAGTGGAAAGAAAACAAGGAGAGATGGA 652
|| || ||||||| |||||| ||| ||||| |||||||||||||||||||||||||||
Sbjct 599 GAAGATGACGATGGGGAGGA---TATCAGAGGCAGTGGAAAGAAAACAAGGAGAGATGGA 655
Query 653 CATGAAGTAGTATATGCTTCCGGAGAGAAGAAGAGAGAGGGAAGATCAAAGGTAGATCGT 712
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CATGAAGT--T-TATGCTTCCGGAGAGAAGAAGAGAGAGGGAAGATCAAAGGTAGATCGT 712
Query 713 GAAGCTGATGATCAACAATTTTTGCAGCTGGAGGAAAAAGATGTTGTATCGTCTGTTGCC 772
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 713 GAAGCTGATGATCAACAAGTTTTGCAGCTGGAGGAAAAAGATGTTGTATCATCTGTTGCC 772
Query 773 ACTGTGCTTTCCGATTTGTGTGGTCCGGGAGAGTGGATGCCTATGGAAAAACTTCATTCG 832
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 773 ACTGTGCTTTCCGATTTGTGTGGTCCGGGAGACTGGATGCCTATGGAAAAACTTCACGCG 832
Query 833 GTGATATTAAAGGAGTATGGAAACGTATGGCATCACAGTCGAGTAAGAAGATACCTATCA 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 833 GTGATATTAAAGGAGTATGGAAACGTATGGCATCACAGTCGAGTAAGAAGATACCTAACA 892
Query 893 CAAGAAGACTGGGCTATCCCTGAAGCAAAAGGTAAACCATGGTACGGTTTGCTGATGCTG 952
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 893 CAAGAAGACTGGGCTATCCCTGAAGCAAAGGGTAAACCATGGTACGGTTTGCTGATGCTG 952
Query 953 CTGAGAAAATACCCGGAGCATTTCGTCATCAACACGAGATCAAAGGGAAGAGTTACCCTT 1012
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 953 CTGAGAAAATACCCGGTGCATTTCGTCATCAACACTAGATCAAAGGGAAGAGTTACCCTT 1012
Query 1013 GAATTCGTTTCCCTCGTTACCCTACTCTCATGAGAACTTTACCTTAGTGACTCGGATTA- 1071
|||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 1013 CAATTCGTTTCCCTCGTTACCCTACTCACATGAGAACTTGACCTTAGTGACTCCGATTGT 1072
Query 1072 ---AGATTTAAGAAGCTTTTCTCTCTTTTCTTTGTTTCATATGTAAAATATTTTGGCATT 1128
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1073 TTGAGATTTAAGAAGCTTTTCTCTCTTTTCTTTGTTACATATGTAAAATATTTTGGCACT 1132
Query 1129 GATTAGTAACACGCTGTGTCGTTTTTCTGCACCCAAAAACGCCAACTTCTT---GGTCCT 1185
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
Sbjct 1133 GATTAGTAACACGCTGTGTCGTTTTTCTGCACC-AAAAACGCCAACTTCTTCTTGGTCGT 1191
Query 1186 TGCAGTTGAGAGATTTTGATTTTCT 1210
|||||||||| ||||||||||||||
Sbjct 1192 TGCAGTTGAGGGATTTTGATTTTCT 1216
> Ahg317584 jgi|Araly1|317584|fgenesh1_pm.C_scaffold_3000600
Length=939
Score = 1321 bits (715), Expect = 0.0
Identities = 884/962 (92%), Gaps = 26/962 (3%)
Strand=Plus/Plus
Query 83 ATGGCTACGGCTGTTGGTGGCGGAAGCGATGTGGAGGTTGGATTTGCGAAGCTTCAAGGT 142
|||||||| | ||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCTACATCCGTTGGAAGCGGGAGCGATGTGGAGGTCGGATTTGCGAAGCTTCAAGGT 60
Query 143 GAGGATTTCGAGTACTATATGCAGTCTTACTCCATTATACTCGGCCGGAATTCTAAGAAA 202
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GAAGATTTCGAATACTATATGCAGTCATACTCCATTATACTCGGCCGGAATTCTAAGAAA 120
Query 203 GCCACCGTCGACGTTGATCTCTCATCCCTCGGCGGTGGGATGAACATCTCGCGCAACCAC 262
|| |||||||||||||||||||||||||||||||| || |||||||| || |||||||||
Sbjct 121 GCGACCGTCGACGTTGATCTCTCATCCCTCGGCGGCGGAATGAACATTTCTCGCAACCAC 180
Query 263 GCTCGGATCTTCTATGACTTCACTAGACGACGCTTCTCTCTCGAGGTCCTTGGCAAAAAT 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCGGATCTTCTATGACTTCACTAGACGACGCTTCTCTCTCGAGGTCCTTGGCAAAAAT 240
Query 323 GGCTGCCTCGTTGAAGGTGTTCTTCATCTCCCTGGGAATCCTAACGTCAAGCTCGATTCA 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCTGCCTCGTTGAAGGTGTTCTTCATCTCCCTGGGAATCCTAACGTCAAGCTCGATTCA 300
Query 383 CAAGACCTTTTGCAGATCGGAGACAAAGAGTTCTACTTTCTCCTACCGGTTCGGAGCATC 442
|| |||||||||||||| || ||||||||||||||||| || || ||||||||||| |||
Sbjct 301 CAGGACCTTTTGCAGATTGGTGACAAAGAGTTCTACTTCCTGCTTCCGGTTCGGAGTATC 360
Query 443 TTAGGCGGGCCGTTGGGACCTAGGCACCACGTCTCTGGGCAAACAAGTGTTGTTCCATAC 502
|||||||||| |||||||| |||||||||||||| ||||| || ||||||||||| |||
Sbjct 361 CTAGGCGGGCCATTGGGACCCAGGCACCACGTCTCAGGGCAGACTAGTGTTGTTCCGTAC 420
Query 503 CATAATTATCAGTCGGGTCCAGGTTCTGGGTCGGGTAAGAAGGGCGTCAGGAGTAGAGAG 562
||||| ||||| |||||||||||||| |||||||||||||||| |||| |||||||||||
Sbjct 421 CATAACTATCATTCGGGTCCAGGTTCCGGGTCGGGTAAGAAGGCCGTCCGGAGTAGAGAG 480
Query 563 TTGTatgagtacgatgatgaagatgatgatgacgacgacgatgaggaggacgatatgaga 622
|||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 481 TTGTATGAGTACGATGATGA------------CGACGACGATGAGGAGGA---TATCAGG 525
Query 623 gGAAGTGGAAAGAAAACAAGGAGAGATGGACATGAAGTAGTATATGCTTCCGGAGAGAAG 682
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 526 GGAAGTGGAAAGAAAACAAGGAGAGATGGATATGAAGTAGTATATGCTTCCGGAGAGAAG 585
Query 683 AAGAGAGAGGGAAGATCAAAGGTAGATCGTGAAGCTGATGATCAACAATTTTTGCAGCTG 742
|||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 586 AAGAGA---------TCAAAGGTAGATCGTGAAGCTGATGATCAACAATTTTTGCAACTG 636
Query 743 GAGGAAAAAGATGTTGTATCGTCTGTTGCCACTGTGCTTTCCGATTTGTGTGGTCCGGGA 802
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 637 GAGGAGAAAGATGTTGTATCATCTGTTGCCACTGTGCTCTCCGATTTGTGTGGTCCGGGA 696
Query 803 GAGTGGATGCCTATGGAAAAACTTCATTCGGTGATATTAAAGGAGTATGGAAACGTATGG 862
|| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 697 GACTGGATGCCCATGGAAAAACTTCATTTGGTGATATTAAAGGAGTATGGAAACGTATGG 756
Query 863 CATCACAGTCGAGTAAGAAGATACCT-ATCACAAGAAGACTGGGCTATCCCTGAAGCAAA 921
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 757 CATCACAGTCGAGTAAGAAGATACCTGACC-CAAGAAGACTGGGCTATCCCTGAAGCAAA 815
Query 922 AGGTAAACCATGGTACGGTTTGCTGATGCTGCTGAGAAAATACCCGGAGCATTTCGTCAT 981
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 816 GGGTAAACCATGGTACGGTTTGCTAATGCTACTGAGAAAATACCCGGAGCATTTCGTCAT 875
Query 982 CAACACGAGATCAAAGGGAAGAGTTACCCTTGAATTCGTTTCCCTCGTTACCCTACTCTC 1041
|||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 876 CAACACTAGATCAAAGGGAAGAGTTACCCTTCAATTCGTTTCCCTCGTTTCCCTACTCCC 935
Query 1042 AT 1043
||
Sbjct 936 AT 937
> Ahg899936 jgi|Araly1|899936|Al_scaffold_0004_586
Length=666
Score = 898 bits (486), Expect = 0.0
Identities = 594/645 (92%), Gaps = 12/645 (2%)
Strand=Plus/Plus
Query 83 ATGGCTACGGCTGTTGGTGGCGGAAGCGATGTGGAGGTTGGATTTGCGAAGCTTCAAGGT 142
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTACGGCTGTTGGAGGCGGAAGCGATGTGGAGGTTGGATTTGCGAAGCTTCAAGGT 60
Query 143 GAGGATTTCGAGTACTATATGCAGTCTTACTCCATTATACTCGGCCGGAATTCTAAGAAA 202
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GAGGATTTCGAATACTATATGCAGTCTTACTCCATTATACTCGGTCGGAATTCTAAGAAA 120
Query 203 GCCACCGTCGACGTTGATCTCTCATCCCTCGGCGGTGGGATGAACATCTCGCGCAACCAC 262
|| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||
Sbjct 121 GCGACCGTCGACGTTGATCTCTCATCTCTCGGCGGCGGGATGAACATTTCGCGTAACCAC 180
Query 263 GCTCGGATCTTCTATGACTTCACTAGACGACGCTTCTCTCTCGAGGTCCTTGGCAAAAAT 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCGGATCTTCTATGACTTCACTAGACGACGCTTCTCTCTCGAGGTCCTTGGCAAAAAT 240
Query 323 GGCTGCCTCGTTGAAGGTGTTCTTCATCTCCCTGGGAATCCTAACGTCAAGCTCGATTCA 382
|||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCTGCTTCGTTGAAGGTGTCCTCCATCTCCCTGGGAATCCTAACGTCAAGCTCGATTCA 300
Query 383 CAAGACCTTTTGCAGATCGGAGACAAAGAGTTCTACTTTCTCCTACCGGTTCGGAGCATC 442
||||||||||||||||| || ||||||||||| ||||| || || ||||||||||| |||
Sbjct 301 CAAGACCTTTTGCAGATTGGTGACAAAGAGTTTTACTTCCTGCTTCCGGTTCGGAGTATC 360
Query 443 TTAGGCGGGCCGTTGGGACCTAGGCACCACGTCTCTGGGCAAACAAGTGTTGTTCCATAC 502
||| |||||| |||||||| |||||||||||||| ||||| || ||||||||||| |||
Sbjct 361 CTAGACGGGCCATTGGGACCCAGGCACCACGTCTCAGGGCAGACTAGTGTTGTTCCGTAC 420
Query 503 CATAATTATCAGTCGGGTCCAGGTTCTGGGTCGGGTAAGAAGGGCGTCAGGAGTAGAGAG 562
|| || ||||| |||||||||||||| |||||||||||||||| |||| |||||||||||
Sbjct 421 CACAACTATCATTCGGGTCCAGGTTCCGGGTCGGGTAAGAAGGCCGTCCGGAGTAGAGAG 480
Query 563 TTGTatgagtacgatgatgaagatgatgatgacgacgacgatgaggaggacgatatgaga 622
|||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 481 TTGTATGAGTTCGATGTTGAAGATGATGATGACGACGACGATGAGGAGGA---TATCAGG 537
Query 623 gGAAGTGGAAAGAAAACAAGGAGAGATGGACATGAAGTAGTATATGCTTCCGGAGAGAAG 682
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 538 GGAAGTGAAAAGAAAACAAGGAGAGATGGATATGAAGTAGTATATGCTTCCGGAGAGAAG 597
Query 683 AAGAGAGAGGGAAGATCAAAGGTAGATCGTGAAGCTGATGATCAA 727
|||||| ||||||||||||||| ||||||||||||||
Sbjct 598 AAGAGA---------TCAAAGGTAGATCGTCAAGCTGATGATCAA 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45175656645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5