BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07270.1
Length=1904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478046 jgi|Araly1|478046|fgenesh2_kg.3__747__AT3G07270.1 2357 0.0
> Ahg478046 jgi|Araly1|478046|fgenesh2_kg.3__747__AT3G07270.1
Length=1729
Score = 2357 bits (1276), Expect = 0.0
Identities = 1427/1501 (95%), Gaps = 5/1501 (0%)
Strand=Plus/Plus
Query 307 ATTTGTGATTTTGTTGTTTTTGGGTACTTTCCCTTTGTGGATTCGGATCTGGTTGGTGGC 366
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 233 ATTTGTGATTTTATTGTTTTTGGGTACTTTCCCTTTGTGGA-TCGGATCTGGTTGGTGGC 291
Query 367 TTTGTCAAATGGGCGCATTAGATGAGGGATGTTTGAATCTGGAGCTCGACATTGGAATGA 426
|| || ||||||||| |||||||||||| |||||||||||| || ||||| |||||||
Sbjct 292 -TTCTC-AATGGGCGCTTTAGATGAGGGACATTTGAATCTGGACCTTGACATCGGAATGA 349
Query 427 AAAATGGCTGCATTGAGCTTGCTTTCGAGCACCAACCTGAGACTTTAGCAATCCAAGACG 486
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 350 AAAATGGCTGCATTGACCTTGCTTTCGAGCTCCAACCTGAGACTTTAGCAATCCAAGACG 409
Query 487 CTGTCAAACTTCTCTTGCAAGGTCTTCATGAAGATGTCAATCGGGAAGGCATCAAAAAGA 546
||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||
Sbjct 410 CTGTCAAACTTCTCTTGCAAGCTCTTCACGAGGATGTCAATAGGGAAGGCATCAAAAAGA 469
Query 547 CTCCTTTCCGTGTCGCCAAGGCCCTTCGTGAAGGGACCAGAGGTTATAAGCAAAAGGTGA 606
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 470 CTCCTTTCCGTGTCGCCAAGGCTCTTCGTGAAGGGACCAGAGGTTATAAGCTAAAGGTGA 529
Query 607 AGGACTATGTACAGAGTGCTCTGTTTCCAGAAGCAGGGTTGGATGAAGGAGTTGGGCAAG 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 AGGACTATGTACAGAGTGCTCTGTTTCCAGAAGCAGGGTTGGATGAAGGAGTTGGGCAAG 589
Query 667 CAGGAGGAGTCGGAGGACTTGTTGTTGTCAGAGACCTCGATCATTACTCTTACTGTGAAT 726
|||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| || |
Sbjct 590 CAGGAGGAGTGGGAGGACTTGTCGTTGTGAGAGATCTCGATCATTACTCTTACTGCGAGT 649
Query 727 CTTGCTTGCTTCCTTTTCATGTCAAGTGTCACATAGGTTATGTCCCATCGGGCCAGA-GA 785
||||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||
Sbjct 650 GTTGCTTGCTTCCTTTTCATGTGAGGTGTCACATAGGTTATGTCCCATCGGGCCA-ACGA 708
Query 786 GTGTTAGGACTGAGCAAGTTCTCTAGAGTCACTGATGTTTTCGCCAAGCGGCTCCAAGAC 845
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 709 GTGTTAGGACTGAGCAAGTTCTCTCGAGTCACTGATGTTTTCGCCAAGCGGCTCCAAGAC 768
Query 846 CCTCAGCGTTTGGCTGATGATATTTGTTCAGCTCTCCAACATTGGGTCAAACCAGCTGGA 905
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 769 CCTCAGCGTTTGGCTGATGATATTTGTTCTGCTCTCCAACATTGGGTCAAACCGGCTGGA 828
Query 906 GTCGCTGTTGTTCTTGAATGCTCTCACATTCACTTCCCCAGTTTGGACTTGGACTCTCTG 965
|||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 829 GTCGCTGTTGCTCTCGAATGCTCTCACATTCACTTCCCGAGTTTGGACTTGGACTCTCTG 888
Query 966 AACTTGTCTAGCCACCGTGGATTTGTGAAGCTACTGGTTTCCTCGGGGTCAGGAGTTTTC 1025
||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 889 CACTTGTCGAGCCACCATGGATTTGTGAAGCTACTGGTTTCCTCGGGCTCAGGAGTTTTC 948
Query 1026 GAGGATGAAAGCTCGAATCTTTGGGGTGAATTTCAGAGTTTCTTGATGTTCAAAGGTGTA 1085
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 949 GAGGATGAAAGCTCAAATCTTTGGGGTGAGTTTCAGAGTTTCTTGATGTTCAAAGGTGTA 1008
Query 1086 AAAACGCAAGCTTTGTGCAGAAATGGCAGCTCTGTGAAAGAGTGGTGCCCAAGCGTTAAA 1145
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1009 AAAACGCAAGCTTTGTGCAGAAATGGCAGCTCTGTGAAAGAGTGGTGCCCGAGCGTTAAA 1068
Query 1146 AGCTCGTCTAAATTATCACCTGAAGTTGACCCGGAAATGGTTTCTGCTGTTGTTTCCATC 1205
||||||| ||| || |||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1069 AGCTCGTATAACTTCTCACCTGAAGAAGACCCGGAAATGGTTTCCGCTGTTGTTTCAATC 1128
Query 1206 CTGAAATCACTGGGAGAAGATCCGTTGAGGAAAGAACTCATTGCTACACCAACTCGATTC 1265
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 CTGAAATCATTGGGAGAAGATCCGTTGAGGAAAGAACTCATTGCTACACCAACTCGATTC 1188
Query 1266 CTCAAATGGATGTTGAACTTCCAAAGAACCAACCTCGAAATGAAGCTAAACAGCTTTAAC 1325
|||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 1189 CTCAAATGGATGTTGAACTTCCAAAGAACCAACCTCGAGATGAAGCTAAACGGCGTTAAC 1248
Query 1326 CCTGCCAAAGTCAATGGCGAGGTCAAAGAGAAAAGGCTGCACTGTGAGCTGAACATGCCC 1385
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1249 TCTGCCAAAGTCAACGGCGAGGTCAAAGAGAAAAGGCTGCACTGTGAACTGAACATGCCC 1308
Query 1386 TTCTGGTCAATGTGTGAACATCATTTGCTTCCTTTCTATGGAGTTGTTCATATTGGCTAC 1445
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1309 TTCTGGTCAATGTGTGAGCATCATTTGCTTCCTTTCTATGGTGTTGTTCATATTGGCTAC 1368
Query 1446 TTTTGTGCTGAAGGATCCAACCCCAACCCTGTTGGAAGTTCACTCATGAAAGCGATTGTA 1505
|||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||
Sbjct 1369 TTTTGTGCTGAAGGATCCAACCACAATCCTATTGGAAGTTCACTCATGAAATCGATTGTA 1428
Query 1506 CACTTTTATGGGTTCAAGCTTCAAGTGCAAGAGAGGATGACTCGACAGATCGCTGAAACG 1565
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1429 CACTTTTATGGGTTCAAGCTTCAAGTGCAAGAGAGAATGACTCGACAGATCGCTGAGACG 1488
Query 1566 CTATCGCCTCTTGTTGGCGGGGATGTGATTGTTGTGGCGGAAGCTGGGCATACTTGTATG 1625
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1489 CTATCTCCTCTTGTTGGCGGGGATGTGATTGTTGTGGCAGAAGCTGGGCATACTTGTATG 1548
Query 1626 ATCTCTAGAGGAATTGAGAAGTTTGGAAGCAGCACCGCGACAATCGCAGTTTTGGGTCGG 1685
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1549 ATCTCTAGAGGAATTGAGAAGTTTGGAAGCAGCACTGCAACTATCGCAGTTTTGGGTCGG 1608
Query 1686 TTTTCGAGTGACAATTCCGCAAGAGCGATGTTTCTAGACAAGATCCATACAACTAATGCC 1745
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1609 TTTTCGAGTGACAATTCCGCAAGAGCGATGTTTCTAGACAAGATTCATACAACTAATGCC 1668
Query 1746 TTGAAGACAGAGTCAAGCTCTCCATTTTGAGATGGTTTCATGTCTGTTTGTTGTCttttt 1805
||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1669 TTGAAGACAGATTCAGGCTCTCCATTTTGAGATGGTTTCATGTCTATTTGTTGTCTTTTT 1728
Query 1806 t 1806
|
Sbjct 1729 T 1729
Score = 206 bits (111), Expect = 6e-52
Identities = 164/187 (88%), Gaps = 14/187 (7%)
Strand=Plus/Plus
Query 1 TTTTACGAATCCACATATTCCTGGATCAACGGGAACCCTTCGTTTCTTTC--CC-ACCCG 57
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1 TTTTACGAATCCACATATTCCTGGATCAACGGGAACCCTTCGTTTCTTTCTTCCCACCCT 60
Query 58 CGTGTTATCCCGTTTCTCAAATTTCTCATCTTTCCGGGAAAATTCAC-tttt-tttttt- 114
||| |||||| ||||||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 61 CGTATTATCCTGTTTCTCAAATTTCTCAGCTTTCCGGGAAAATTCACCTTTTCTTTTTTG 120
Query 115 t---CCTGGGAAG--A---TTCGTTGTGTTGTGAATTTTAGTGGGCACCTTCAAATTTTC 166
| ||||||||| | ||||||||| || || |||| ||||||| ||||||||||||
Sbjct 121 TTTTCCTGGGAAGGGAAGATTCGTTGTGGTGAGAGTTTTTGTGGGCATCTTCAAATTTTC 180
Query 167 GAttttt 173
|||||||
Sbjct 181 GATTTTT 187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71533480110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5