BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07280.1
Length=2294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903623 jgi|Araly1|903623|Al_scaffold_0003_751 1002 0.0
Ahg928402 jgi|Araly1|928402|scaffold_300859.1 130 5e-29
> Ahg903623 jgi|Araly1|903623|Al_scaffold_0003_751
Length=1443
Score = 1002 bits (542), Expect = 0.0
Identities = 620/659 (94%), Gaps = 0/659 (0%)
Strand=Plus/Plus
Query 1634 aggaaaagcacaaggagaagaagcacaagaaggataaagaaaagaaagaaggaaaagaga 1693
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 77 AGGAAAAGCACAAGGAGAAGAAGCACAAGAAGGATAAAGAAAAGAAAGAAGGAAAGGAGA 136
Query 1694 aaagggaaaaagaaaaaagcaaagacaaacataaggaacggaaggagagaaaagagaaac 1753
||| ||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 137 AAAAGGATAAAGAAAAAAGCAAAGATAAACATAAGGAACGGAAGGAGAAAAAAGAGAAAC 196
Query 1754 ataaagataggaaagacaaagatcgagataaagaaaaaagcagaaCTTCAGAGGACAGAA 1813
||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||
Sbjct 197 ATAAAGATAGGAAAGACAAAGATCGAGATAAAGAAAAGAGTAGAACTTCGGAGGACAAAA 256
Query 1814 AAGCTGCTGGTGTTTTGTCAAACACCGGGGACAGAGAAAAACTTGTAACAAATACCTTGC 1873
|| |||||| || |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 257 AAACTGCTGTTGCTTTGCCGAACACCGGGGACAGAGAAAAACTTGTAACAAATACCTTGC 316
Query 1874 AGAGTAATGGTAACGGAGAGTCTAAGTTTATACAGGACCTGGCAAGAAGGTTCGGAAATG 1933
||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 317 AGAATAATGGTAACGGAGAGTCTAAGTTTATACAGGACCTGGCAAGAAGGATCAGAAATG 376
Query 1934 AAGAAGCTACAGAAAGTCAAAGTCCACGAAAGATTGATTTTCCTTGTGGAGTTACAGAGA 1993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 AAGAAGCTACAGAAAGTCAAAGTCCACGAAAGATTGATTTTCCTTGTGGAGTTACAGAGA 436
Query 1994 ATAACAATTCCTGCTCAATACCTCAAACCAACCGTACAAAAGTTGACGAGAAGAGAAACA 2053
||||||||||||| || | ||||||||||| | ||| ||||||||||||||||||||||
Sbjct 437 CTAACAATTCCTGCCCAGTTCCTCAAACCAATCATACGAAAGTTGACGAGAAGAGAAACA 496
Query 2054 GTACCCATAGAAACTCTGCTATGTCAAAAAAGTCTGAAAGTGCGGTTCTCCGAGTATCAC 2113
|||| |||| |||||||||||| |||||| |||||||| ||||||| |||||||||||
Sbjct 497 GTACTCATAAAAACTCTGCTATTTCAAAAGGGTCTGAAAATGCGGTTATCCGAGTATCAT 556
Query 2114 CTTGCATGGATCAGAAAGGAGCTGAGGTTAAAGTTAAACCAGTGGAGAAAAATGATAAGG 2173
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 557 CTTGCATGGATCAGAAAGGAGCTGAGGTTAAAGTTAAACCAGTGGAGAAAAATGATCAGG 616
Query 2174 CAAAGAAACGGGAACTACAAGAGAAGAATCACCGCAGGGACAGTGTGACAAAGAGTGATA 2233
||| |||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 617 CAAGGAAAAGGGAACTACAAGAAAAGAATCACCGCAGGGAAAGTGTGACAAAGAGTGATA 676
Query 2234 AGCCATTGGGTAATGAAGGGATAAAGAAAAGTGAACCAAAAAACATAACAAATGGAAGT 2292
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 677 AGCCATTGGATAATGAAGGGATAAGGAAAAGTGAACCAAAAAACATAACAAATGGAAGT 735
Score = 130 bits (70), Expect = 5e-29
Identities = 77/80 (96%), Gaps = 2/80 (3%)
Strand=Plus/Plus
Query 815 ATGTCTCGTTGCTTCCCATTTCCACCTCCAGGATATGAGAAGAAGATTAGAACCGAGGCA 874
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTCTCGTTGCTTCCCATTTCCACCTCCAGGATATGACAAGAAGATTAGAACCGAGGCA 60
Query 875 TCAGACTCTTTGA-TAAAGG 893
||||||||||| | ||||||
Sbjct 61 TCAGACTCTTT-ACTAAAGG 79
> Ahg928402 jgi|Araly1|928402|scaffold_300859.1
Length=191
Score = 130 bits (70), Expect = 5e-29
Identities = 179/224 (80%), Gaps = 38/224 (17%)
Strand=Plus/Minus
Query 297 GGTTTGCGATTGttttttttttttAGGGTTTGATTGGATCGTGGCCCTGATTTAGAACCT 356
|||||||||||| ||||||||||||||||||||||||||||| ||| | | | |
Sbjct 191 GGTTTGCGATTG--TTTTTTTTTTAGGGTTTGATTGGATCGTGTCCC-----T-G-A--T 143
Query 357 AATTGCGGTCAAAAGAGTCTGTGGGAGGATTG--AATTGGAATAAAGTGTTATCtttttt 414
|||||||||||||||||||||| |||||| ||||||||| ||||| ||
Sbjct 142 AATTGCGGTCAAAAGAGTCTGT---TGGATTGAAAATTGGAAT-AAGTG--------TTG 95
Query 415 tGATTGGCGGAATTCACATTCAATCGGAAAGAGGCCAACTTGTTGGCGGCTTCCGATATA 474
| | | | | || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 94 T-A-T--CTG--TT--GATTCAATCGGAAAGAGGCCAACTTGTTGGCGGCTTCCGATAAA 43
Query 475 AAGGTGCTTTTGAGCTCTGCTCATATATCTT-ATTTAACTCCAA 517
|||||||||| ||||| ||||||||||||| || ||||||||
Sbjct 42 AAGGTGCTTT-GAGCT--GCTCATATATCTTTATG-AACTCCAA 3
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86388675660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5