BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07300.3
Length=1714
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478051 jgi|Araly1|478051|fgenesh2_kg.3__752__AT3G07300.2 2588 0.0
> Ahg478051 jgi|Araly1|478051|fgenesh2_kg.3__752__AT3G07300.2
Length=1689
Score = 2588 bits (1401), Expect = 0.0
Identities = 1620/1720 (94%), Gaps = 38/1720 (2%)
Strand=Plus/Plus
Query 2 GTCTCCTATTATCAATTCCGTTTCTCTCTCGCCGGAAGATTTTTGCTACTTCATCTCCTT 61
||||||| ||||||||||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct 1 GTCTCCTTTTATCAATTCCGTTTCTCTCTCGCCGGAATATTCTTGCTACTTCGTCTCCTT 60
Query 62 ATCGCCCCACCACCGTCACATATTCACTGGTTTCGCATTTTCTCAAGTTTCTCGTTAATT 121
|||| ||| |||||||||| | | | || || | | | |||||||||||||
Sbjct 61 ATCGTCCC-CCACCGTCAC--A-T-A-----TT--CA----C-C-A-TTTCTCGTTAATT 101
Query 122 TCGGTTAAAGAAGATGCCAGACGTTCAATCAACGGTGGTGGAATTTGTTAACAAGCTCAG 181
|||| ||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 102 TCGGATAAGGAAGATGCCGGACGTCCAATCAACGGTGGTGGAATTTGTTAACAAGCTCAG 161
Query 182 AAAGCGTAAGATTGAGGGCTCACAGGCTACAGCCAAATACACCGTAGAGCTACTTAGGTC 241
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 162 AAAGCGTAAGATCGAGGGCTCACAGGCTACAGCCAAATGCACCGTAGAGCTACTTAGGTC 221
Query 242 AGTAATTTCGCATCAGCGGGTGCCTCACGCTAACCAAGCTGCCGCTCTTATCGATGCTGT 301
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 222 AGTGATTTCGCATCAGCGGGTGCCTCACGCAAACCAAGCTGCTGCTCTTATCGATGCTGT 281
Query 302 GAAAGCTGTTGGTGAGCAATTGATCGCTGCTAATCCTGTTGAGCTTGCGGTGGGAAATGT 361
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 282 GAAAGCCGTTGGTGAGCAATTGGTCGCTGCTAATCCTGTTGAGCTTGCGGTGGGAAATGT 341
Query 362 AGTTAGACGGGTTTTGCATATTATAAGGGAGGAAGATCTTTCTCTAACTACAGCAGCTAT 421
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 342 AGTTAGACGGGTTTTGCATATTATAAGGGAGGAAGATCTTTCTCTCACTACAGCAGCTAT 401
Query 422 GGGTGGTTTGGACTTGTTGGATGCAAGTGATGATGATGATGTAGACAATTGCAAAGGAAT 481
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 402 GGGTGGTTTGGACTTGTTGGATGCAAGTGATGATGATGATGTAGATAATTGCAAAGGAAT 461
Query 482 TGGGTTTCCTGCAATGTCTGCAGCAGTTGTTGCAGCTGCAGCTAGGAGTACATTACGCCC 541
||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 462 TGGGTATCCTGCAATGTCTGCAGCAGTTGTTGCAGCTGCTGCTAGGAGTACGTTACGCCC 521
Query 542 TCCATCTTTGCAAACGCTTCTCGAGGGCACTCCTGAATCTGCAACTGTTCCATACACATC 601
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 522 TCCATCTTTGCAAACGCTTCTCGAGGGTACTCCTGAATCTGCAACTGTTCCATACACATC 581
Query 602 TTCATCTGGTGCTGATTCCGAAAGCAAAAGTAAATCTGCCGATAAAAGTTCGTTAACTCG 661
|||||| |||||||||||||||||| | ||| |||| ||||||||||| ||||||||
Sbjct 582 TTCATCCGGTGCTGATTCCGAAAGC---A--AAA-CTGCTGATAAAAGTTCATTAACTCG 635
Query 662 GAAGCTGAAGCATGATGTTATCGAAGGAGTGAATCAACTTATTCAAGAGATTGCTGGTTG 721
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 636 GAAGCTGAAGCATGATGTTATCGAAGGAGTGAATCAACTTATTCATGAGATTGCTGGTTG 695
Query 722 TCATGAGCAGATCGCTGAACAAGCTATAGAGCATATACATCAAAATGAGGTGATCCTAAC 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 TCATGAGCAGATCGCTGAACAAGCTATAGAGCATATACATCAAAATGAGGTGATCCTAAC 755
Query 782 CCTGGGTAGCTCAAGAACAGTGCTTGAGTTTCTGTGTGCTGCAAAGGAGaaaaaaaGATC 841
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 756 CCTGGGTAGCTCAAGAACAGTTCTTGAGTTTCTGTGTGCTGCCAAGGAGAAAAAAAGATC 815
Query 842 TTTTCGTGTATTTGTTGCCGAAGGTGCTCCAAGATATCAGGGCCATCTATTAGCAAAAGA 901
||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 816 TTTTCGTGTATTTGTCGCCGAAGGTGCTCCAAGGTATCAGGGCCATCTCTTAGCAAAAGA 875
Query 902 ATTGGTAGCTAGAGGTTTGCAGACAACTGTGATCACCGACTCTGCAGTGTTTGCTATGAT 961
|||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||
Sbjct 876 ATTGGTAGCTAGAGGTTTGCAGACCACTGTGATCACTGATTCTGCAGTGTTTGCGATGAT 935
Query 962 ATCTCGAGTGAATATGGTTATAATTGGAGCTCATGCAGTGATGGCTAATGGTGGAGTTAT 1021
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 936 ATCACGAGTGAATATGGTTATAATTGGAGCTCATGCAGTGATGGCTAATGGTGGGGTTAT 995
Query 1022 AGGGCCAGTTGGTGTCAACATGGCTGCTCTTGCAGCACAAAAGCACGCAGTCCCATTCGT 1081
||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 996 AGGACCTGTTGGTGTCAATATGGCTGCTCTTGCAGCACAAAAGCACGCAGTCCCATTTGT 1055
Query 1082 GGTTCTTGCTGGTAGTCACAAGTTGTGTCCCCTCTATCCTCACAATCCGGAAGTATTACT 1141
|||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1056 GGTTCTAGCCGGTAGTCACAAGTTGTGTCCACTCTACCCTCACAATCCGGAAGTATTACT 1115
Query 1142 AAATGAGCTGAGATCTCCATCTGAACTGTTGGATTTTGGTGAATTCTCTGATTGCCTGGA 1201
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1116 AAATGAGCTGAGATCTCCATCTGAACTGCTGGATTTTGGTGAATTCTCTGATTGCCTGGA 1175
Query 1202 TTTTGGAGCAGGTTCCGGGTCTCTTCAAGTTGTCAACCCAACATTCGATTATGTCCCACC 1261
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 TTTTGGAGCGGGTTCCGGGTCTCTTCAAGTTGTCAACCCAACATTCGATTATGTCCCACC 1235
Query 1262 AAACCTTGTTAGTCTCTTTATAACAGACACGGGAGGACACAATCCATCCTACATGTACCG 1321
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1236 AAACCTTGTTAGTCTCTTTATAACGGACACGGGAGGACACAATCCATCCTACATGTACCG 1295
Query 1322 TCTTATTGCGGACTACTACTCTGCTGATGATTTGGTGATGTAGCGATAAAGGACTAG-TT 1380
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1296 TCTTATTGCGGACTATTACTCTGCTGATGATTTGGTGATGTAGCGATAAAGGACTAGCTT 1355
Query 1381 TTCGGTCACTTGGTGGGAACTATACAACATTCAGTCGGAT-A--GTCGGTCATTCACAAT 1437
|| |||||||||||||||||||||||||| || ||||||| | ||| ||||||||||||
Sbjct 1356 TT-GGTCACTTGGTGGGAACTATACAACAGTCGGTCGGATGATAGTCCGTCATTCACAAT 1414
Query 1438 TGAAGAATATATGTACATTGCACAAAAACAGTTGCTCAAGGATTGTGAATGAAAAAGAGA 1497
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1415 TGAAGAATATATGTACATTGCACAAAAACAGTTGCTCAAGGATTGTGAAAGAGAAAGAGA 1474
Query 1498 AACATCTTAGTGTCTGAAATT-GTCAGGCCAAGTTTATTTTTGCCGTGTCTTGGGTAATT 1556
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1475 AACATCTTTGTGTCTGAAATTTGTCAGGCCAAGTTTATTTTTGCCGTGTCTTGGGTAATT 1534
Query 1557 CCTTTAGCTCAGTCTCAATGGTGTCTATTGTTACTTGATAGTATACTTCTCTTTCAACAC 1616
|||||||||||||||||||||||||||||||||||||||| || ||| || | ||||||
Sbjct 1535 CCTTTAGCTCAGTCTCAATGGTGTCTATTGTTACTTGATA-TA--CTTTTCCT-CAACAC 1590
Query 1617 AACGT-TTTTCTTTGGTTGGCTTTTGTATTTGCTAATACGAGAATTACCACTGGAGGTGG 1675
|| | |||||||| |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1591 AA-GAATTTTCTTTCGTTGGCTTTTGTATTTGCAAATACGAGAATTACCACCGGAGGTGG 1649
Query 1676 ACAGGACATCTTATTTT-AACTAATTAAAGTTTTGGGTGC 1714
||||||||||||||||| |||||| |||||||||||||||
Sbjct 1650 ACAGGACATCTTATTTTTAACTAACTAAAGTTTTGGGTGC 1689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64296333560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5