BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07320.1
Length=1834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317589 jgi|Araly1|317589|fgenesh1_pm.C_scaffold_3000605 2158 0.0
> Ahg317589 jgi|Araly1|317589|fgenesh1_pm.C_scaffold_3000605
Length=1383
Score = 2158 bits (1168), Expect = 0.0
Identities = 1310/1379 (95%), Gaps = 7/1379 (1%)
Strand=Plus/Plus
Query 159 CTTCTACATC-TCTTTGCTCTGTCTCTGCTCATCTCTGTTTCAGGAGCAAAGTTCTCCGG 217
|||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 7 CTTCTACATCTTC-TTGCTCTGTCTCTGCTAATCTCTGTTTCAGGAGCAAAGTTCTCCGG 65
Query 218 CCGGCCAGGAATCAACTATGGCCAGCTCGGAAACAACCTCCCGTCACCGTCCGACTCAGT 277
|||||||||| ||||||| ||||||||||||||||||||||| || ||| ||||||||||
Sbjct 66 CCGGCCAGGAGTCAACTACGGCCAGCTCGGAAACAACCTCCCATCTCCGGCCGACTCAGT 125
Query 278 CAACCTCATCAAGTCCCTAAACGCGAAACGCGTCAAACTCTACGACGCTAACCCAAAAAT 337
||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 126 CAACCTCATAAAATCCCTAAACGCAAAACGAGTCAAACTCTACGACGCTAACCCAAAAAT 185
Query 338 CCTCGCCGCGTTAAACGGCACCGACATTACCGTCTCCGTCATGGTCCCAAACGAGCTCCT 397
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 186 CCTCACCGCCTTAAACGGCACCGACATTACCGTCTCCGTCATGGTCCCAAACGAGCTCAT 245
Query 398 CGTCAACATCTCCAAATCCGCATCACTCTCCGACGACTGGATCCGATCCAACATCCTCCC 457
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 246 CGTCAACATTTCCAAATCCGAATCACTCTCCGACGACTGGATCCGATCCAACATCCTCCC 305
Query 458 GTTTTACCCAACCACCAAGATCCGTTACCTCCTCGTCGGCAACGAGATCCTCTCTTTACC 517
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 306 GTTTTACCCAACCACCAAGATCCGTTACCTCCTCGTCGGCAACGAGATCCTCTCTTCACC 365
Query 518 AGACTCTGAGCTCAAATCTTCACTCGTTCCCGCAATGCGCAAGATCCAACGCTCCTTAAA 577
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 366 AGACTCTGAGCTCAAATCTTCACTCGTTCCCGCAATGCGCAAGATCCAACGGTCCTTAAA 425
Query 578 GTCTCTCGGCGTTAAAAAAGTCAAAGTCGGTACTACACTCGCCACCGACGTTCTCCAATC 637
||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||
Sbjct 426 GTCTCTCGGCGTTAAAAAAGTCAAAGTAGGGACTACACTCGCCGTCGACGTTCTCCAATC 485
Query 638 TTCGTTTCCTCCGTCTAGCGGCGAGTTTCGGGAGGATATCTCCGGTTTAATTATGAAACC 697
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 486 TTCGTTTCCTCCGTCTAGCGGCGAGTTTCGGTCGGATATCTCCGGTTTAGTTATGAAACC 545
Query 698 GATGCTCCAATTCTTAAACCGGACCAAATCTTTCCTATTCGTTGATGTTTACCCGTATTT 757
||||||||| |||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 546 GATGCTCCAGTTCTTAAACCGGACTAAATCGTTCGTATTCGTTGATGTTTACCCGTATTT 605
Query 758 CGCGTGGGCACAAGATCCGACCCATGTGGATCTCGATTACGCGATTTTCGAATCTACCAA 817
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 606 CGCGTGGGCTCAAGATCCGACCCATGTGGATCTCGATTACGCCATTTTCGAATCTACCAA 665
Query 818 CGTCACCGTCACGGATCCGGTTTCGAATCTGACATACCACAACCTATTCGATCAGATGAT 877
|||||||||||||||||| || |||||||||| ||||||||||| ||||||||||||||
Sbjct 666 CGTCACCGTCACGGATCCAGTCACGAATCTGACCTACCACAACCTGTTCGATCAGATGAT 725
Query 878 TGACGCTTTCGTCTTCGCCATGAAACGAGTCGGGTATCCGGATATTCGGATCTGGGTCGC 937
|||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||
Sbjct 726 TGACGCTTTCGTCTTCGCTATGAAACGACTCGGGTATCCGGATCTTCGGATCTGGGTCGC 785
Query 938 GGAAACGGGTTGGCCCAATAACGGTGACTACGACCAAATTGGAGCGAATATTTACAACGC 997
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 786 GGAAACGGGTTGGCCCAATAACGGTGACTGCGACCAAATTGGAGCGAATATTTACAACGC 845
Query 998 CGCTACTTACAATCGCAATGTTGTCAAGAAACTCGCCGCTGACCCGCCCGTAGGTACGCC 1057
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 846 CGCCACTTACAATCGCAATGTTGTCAAGAAACTCGCCGCTGACCCGCCCGTAGGTTCGCC 905
Query 1058 CGCCCGACCCGGAAAGGTTCTACCGGCGTTTGTATTCGCACTTTACAACGAAAATCAGAA 1117
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 906 CGCCCGACCCGGAAAGGTTCTACCGGCGTTTGTATTCGCACTTTACAACGAGAATCAGAA 965
Query 1118 AACGGGTCCGGGTACGGAGCGGCATTTCGGACTTTTACATCCGAATGGGACTCAGGTTTA 1177
|||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||
Sbjct 966 AACGGGTCCGGGTACGGAGCGGCATTTCGGACTTCTACATCCCAACGGGACTCAGGTCTA 1025
Query 1178 CGGGATTGATTTGTCGGGGAAGACG--G-AGTACAAGGAATCATTGCCGGCGCCGGAGAA 1234
||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 1026 CGGGATTGATTTGTCGGGGAAGACGACGGAGTACAAGGAATCGTTGCCGGCGCCGGAGAA 1085
Query 1235 TAACGACCTGTACAAAGGGAAGATTTGGTGCGTGGTGGCTAAAGGAGCGAATTGGACTCA 1294
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 TAACGAGTTTTACAAAGGGAAGATTTGGTGCGTGGTGGCTAAAGGAGCGAATTGGACTCA 1145
Query 1295 GCTAGGTGATGCTCTATCGTACGCTTGCTCACAGGGGAATAATACCTGTGACCCGATTCA 1354
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1146 GCTAGGTGATGCTCTATCGTACGCTTGCTCACAGGGAAATAATACCTGTGACCCGATTCA 1205
Query 1355 ACGCGGAGGCCCATGTCAGAAACCTGATTTGACCGTTTTGCACGCCAGTTACGCCTTTAG 1414
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1206 ACGCGGAGGCCCATGTCACAAACCCGATTTGACCGTTTTGCACGCCAGCTACGCCTTTAG 1265
Query 1415 CTCTTATTGGGCCCAATTTCGTAAGATCGG-GGGAACTTGCTCCTTCAACGGCTTAGCTA 1473
||| |||||||||||||||||||||| ||| |||| ||||||| |||||||||||||| |
Sbjct 1266 CTCCTATTGGGCCCAATTTCGTAAGACCGGTGGGA-CTTGCTCTTTCAACGGCTTAGCCA 1324
Query 1474 CACAAACCATCAAAGATCCAAGTTACGGACGATGTGAGTTTCCGAGCGTGACATTGTGA 1532
| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1325 CCCAAACCATTAAAGATCCAAGCTACGGACGCTGTGAGTTTCCGAGCGTGACATTGTGA 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68867162960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5