BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07330.1
Length=2716
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478055 jgi|Araly1|478055|fgenesh2_kg.3__756__AT3G07330.1 4324 0.0
Ahg489694 jgi|Araly1|489694|fgenesh2_kg.6__2828__AT4G07960.1 359 7e-98
> Ahg478055 jgi|Araly1|478055|fgenesh2_kg.3__756__AT3G07330.1
Length=2659
Score = 4324 bits (2341), Expect = 0.0
Identities = 2561/2666 (96%), Gaps = 19/2666 (1%)
Strand=Plus/Plus
Query 3 AAGACACTGGGACGAAAGACGACGTCA------TCTATTGTTAGTAAG-TTTAGCCCAAT 55
|||||| |||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1 AAGACAGTGGGACGAAAGACGACGTCATCTCTCTCTATTGTTAGTAAGTTTTAGCCCAAT 60
Query 56 CGTGTTCTCTCTGCGC-TTGTCTCCCAAATTCTCAGATCTAATCAGATCGACGAT-TCCT 113
||||| |||||||| | |||||||||||||||||||||||||||||||||| | ||||
Sbjct 61 CGTGTCCTCTCTGC-CTTTGTCTCCCAAATTCTCAGATCTAATCAGATCGA--TTCTCCT 117
Query 114 GATTTCATCAGCTTCGAGAGAGATCCTTCTTTT--GTTCTTCGTTGAATGTCTCGCTCCC 171
|||||||||||||||||||||||| | |||||| ||| ||||||||||||||||||||
Sbjct 118 GATTTCATCAGCTTCGAGAGAGATTC-TCTTTTCCTTTC-TCGTTGAATGTCTCGCTCCC 175
Query 172 AGAACGAGGAGTTTCAACAATGGTGGAACAAGCAACGAGATAGGAACAATCACGACGTTC 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 AGAACGAGGAGTTTCAACAATGGTGGAACAAGCAACGAGATAGGAACAATCACGACGTTC 235
Query 232 TTTACGCCGGCGACGATGAAGCATTCCTCACCGTTGAAATCCGTACTCCGGCCACCGTTG 291
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TTTACACCGGCGACGATGAAGCATTCCTCACCGTTGAAATCCGTACTCCGGCCACCGTTG 295
Query 292 ACCCTGATAAGGATCGGATCCGGACTCGTACCGTTCGTCAGCTCTCTCGTCTCTACCTCC 351
|||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 296 ACCCGGATAAGGATCGGATCCGGACCCGTACCGCTCGTCAGCTCTCTCGTCTCTACCTCC 355
Query 352 TCAAGTTCAAGCAACTCGCATCTTCCTTCCTCTGGATCGGTAACTCTTTCCTTTACCTTG 411
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 356 TCAAGTTCAAGCAACTCGCATCTTCCTTCGTCTGGATCGGTAACTCTTTCCTTTACCTTG 415
Query 412 TTCGCACCGCCAATCGCCGCATTGCCAACGATAATCCTCCATCCGTGTCTTCCTCCGCTA 471
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 416 TTCGCACCGCCAATCGCCGCATTGCCAACGATAATCCTCCATCTGTCTCCTCCTCCGCTA 475
Query 472 GATTGTACCGTTTAATCAAGGGATTTCTCGTTGTTGTTGTGCTTCTTCTCTGTTTCGAGC 531
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GATTGTACCGTCTAATCAAGGGATTTCTCGTTGTTGTTGTGCTTCTTCTCTGTTTCGAGC 535
Query 532 TTGCCGCTTATTTCAAGGGATGGCACTTCACACCTCCCTCTGTTGCCTCCGCCGAGGTCG 591
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 536 TTGCCGCTTATTTCAAGGGATGGCACTTCACACCTCCCTCTGTCGCCTCCGCCGAGGTCG 595
Query 592 CTGTGGAGGTGGTTTACGCTTGGTGGTTGGAGATCAGGGCGTCTTACCTTGCGCCACCGC 651
| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 596 CCGTGGAGGTGGTTTACGCTTGGTGGTTGGAGATCAGGGCGTCTTATCTCGCGCCGCCGC 655
Query 652 TTCAGAGCTTGACCAATGTATGTATAGTTCTCTTCTTGATTCAATCGGTTGACCGTCTGG 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TTCAGAGCTTGACCAATGTATGTATAGTTCTCTTCTTGATTCAATCGGTTGACCGTCTGG 715
Query 712 TGCTTGTGCTTGGATGCTTCTGGATCAAGCTCCGCCGTATTAAGCCTGTTGCATCTATGG 771
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 716 TGCTTGTGCTTGGATGCTTCTGGATCAAGCTTCGCCGCATTAAGCCTGTTGCATCTATGG 775
Query 772 AGTACCCGACTAAATTGGTTGGAGAGGGAGTTAGATTGGAAGATTATCCAATGGTGATTG 831
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CGTACCCGACTAAATTGGTTGGAGAGGGAGTTAGATTGGAAGATTATCCAATGGTGATTG 835
Query 832 TTCAGATTCCTATGTGCAATGAAAAGGAGGTTTACCAACAATCTATAGGAGCTGTGTGTA 891
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 836 TTCAGATTCCAATGTGCAATGAAAAGGAGGTTTACCAACAATCTATTGGAGCTGTGTGTA 895
Query 892 TGCTTGACTGGCCAAGGGAAAGAATGCTAGTTCAGGTTCTTGATGACTCCAGTGAATTGG 951
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 896 TGCTTGACTGGCCAAGGGAGAGAATGCTAGTTCAGGTTCTTGATGACTCCAGTGAGTTAG 955
Query 952 ATGTTCAGCAGCTTATAAAAGCGGAAGTACAAAAATGGCAACAAAGGGGTGTTCGGATAG 1011
|||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 956 ATGTTCAGCAGCTTATAAAAGCTGAAGTACAGAAATGGCAACAAAGGGGTGTAAGGATAG 1015
Query 1012 TGTATAGACATCGTCTCATACGTACTGGTTACAAGGCTGGAAACCTTAAAGCTGCAATGA 1071
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TGTATAGACACCGTCTCATACGTACTGGTTACAAGGCTGGAAACCTTAAAGCTGCAATGA 1075
Query 1072 ACTGTGAATATGTCAAAGACTACGAGTTTGTCGCCATATTTGATGCAGATTTCCAGCCAC 1131
|||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 1076 ACTGTGAATACGTCAAAGACTACGAATTTGTTGCCATATTTGATGCGGATTTCCAGCCAC 1135
Query 1132 CTGCGGATTTCTTGAAGAAAACTGTGCCTCATTTTAAGGGTAATGAAGAATTAGCCTTGG 1191
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1136 CAGCGGATTTCTTGAAGAAAACTGTGCCTCACTTTAAGGGTAATGATGAATTAGCCTTGG 1195
Query 1192 TCCAAACACGGTGGGCTTTTGTGAACAAAGACGAAAACTTGCTTACAAGACTCCAGAACA 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TCCAAACACGGTGGGCTTTTGTGAACAAAGACGAAAACTTGCTTACAAGACTCCAGAACA 1255
Query 1252 TAAATTTGTCTTTCCACTTTGAAGTTGAACAGCAGGTCAATGGTGTTTTTATTAACTTCT 1311
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1256 TAAATTTGTCTTTCCACTTTGAAGTTGAACAGCAGGTTAATGGTGTCTTTATTAACTTCT 1315
Query 1312 TTGGCTTTAATGGAACTGCTGGTGTTTGGAGAATCAAAGCCCTCGAGGATTGCGGGGGAT 1371
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1316 TTGGCTTTAATGGAACTGCTGGTGTTTGGAGAATCAAAGCCCTCGAGGACTGCGGGGGAT 1375
Query 1372 GGTTGGAGCGAACAACTGTTGAGGACATGGATATTGCCGTTCGTGCGCATCTTTGTGGAT 1431
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1376 GGTTGGAGCGAACAACTGTTGAAGACATGGATATTGCCGTTCGTGCGCATCTTTGCGGAT 1435
Query 1432 GGAAGTTCATTTATCTGAATGATGTTAAGTGTCTCTGTGAACTTCCGGAGTCCTATGAGG 1491
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1436 GGAAGTTCATTTATCTGAATGATGTAAAGTGTCTCTGTGAACTTCCGGAGTCCTATGAGG 1495
Query 1492 CATATAAAAAACAGCAATACCGCTGGCATTCGGGTCCAATGCAACTGTTCCGTTTGTGCT 1551
|||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1496 CATACAAAAAACAGCAATACCGTTGGCATTCGGGTCCAATGCAATTGTTCCGTTTGTGCT 1555
Query 1552 TCTTTGACATTCTTCGGTCAAAGGTGAGTGCTGCCAAGAAAGCAAATATGATATTTCTCT 1611
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1556 TCTTTGACATTCTTCGGTCAAAGGTGAGTGTTGCCAAGAAAGCAAATATGATATTTCTCT 1615
Query 1612 TCTTCTTGCTACGGAAGCTTATCTTGCCATTCTACTCATTCACGCTCTTCTGCGTCATTC 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TCTTCTTGCTACGGAAGCTTATCTTGCCATTCTACTCATTCACGCTCTTCTGCGTCATTC 1675
Query 1672 TTCCATTAACGATGTTCTTCCCAGAGGCTAACTTACCATCTTGGGTTGTTTGCTATATCC 1731
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1676 TTCCATTAACAATGTTCTTCCCAGAAGCTAACTTACCATCTTGGGTTGTTTGCTACATCC 1735
Query 1732 CTGGGATCATGTCCATCTTAAACATCATCCCAGCCCCAAGATCCTTCCCTTTCATAGTTC 1791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 CTGGGATCATGTCCATCTTAAACATCATCCCAGCCCCAAGATCCTTCCCTTTCATAGTTC 1795
Query 1792 CGTATCTCCTTTTCGAAAACACCATGTCAGTTACCAAATTTGGAGCCATGATCTCTGGTT 1851
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 CATATCTCCTTTTCGAAAACACCATGTCAGTTACCAAATTTGGAGCCATGATCTCTGGTT 1855
Query 1852 TGTTCAAGTTTG-ATAGTTCTTACGAGTGGGTAGTCACCAAAAAGCTAGGGAGATCCTCT 1910
|||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1856 TGTTCAAGTTTGGA-AGTTCTTACGAGTGGGTAGTCACCAAAAAGCTTGGGAGATCCTCT 1914
Query 1911 GAGGCGGATCTGGTTGCATACGCAGAGTCCGGCTCTTTGGTTGAGTCCACAACCATCCAA 1970
||||| ||||||||||||||||||||||| || ||| ||| ||||||||||||||||||
Sbjct 1915 GAGGCTGATCTGGTTGCATACGCAGAGTCAGGTTCTCTGGCCGAGTCCACAACCATCCAA 1974
Query 1971 CGATCATCCTCTGATTCAGGTCTGACCGAGCTTAGCAAACTAGGAGCAGCAAAGAAAGCT 2030
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1975 AGATCATCCTCTGATTCAGGTCTGACTGAGCTTAGCAAACTAGGAGCAGCAAAGAAAGCT 2034
Query 2031 GGCAAAACCAAAAGAAACCGTCTGTACAGAACGGAAATCGCACTCGCGTTTATCCTCTTG 2090
|||| |||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 2035 GGCACGACCAAAAGAAACCGTCTGTACAGAACAGAGATCGCACTTGCGTTTATCCTCTTG 2094
Query 2091 GCAGCCTCGGTGAGAAGCTTGTTGTCTGCGCAAGGGATCCATTTCTACTTCCTCTTGTTC 2150
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 GCAGCTTCGGTGAGAAGCTTGTTGTCTGCGCAAGGGATCCATTTCTACTTCCTCTTGTTC 2154
Query 2151 CAAGGAATCACGTTCGTTATTGTCGGTCTAGATTTGATCGGGGAACAGGTCAGTTAGTTT 2210
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2155 CAAGGAATCACTTTCGTTGTTGTCGGTCTAGATTTGATCGGGGAACAGGTCAGTTAGTTT 2214
Query 2211 ATATAACCCTTTTTCTCAGTTTAAAACTACATTGAACCATACCACCAGAAGAACGAACAA 2270
|||||||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 2215 ATATAACCTTTTTTGTCAGTTTAAAACTACATTGAACCATACCACCGGAAGAATGAACAA 2274
Query 2271 GACCCAAAGATCAAGTCAGGAAGGAACGAACCAACTCACTCGCAGGTCTTTTCGTTACAG 2330
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2275 GACCCAAAGACCAAGTCAGGAAGGAACGAACCAACTCACTCGCAGGTCTTTTCGTTACAG 2334
Query 2331 ATAGATACATAAAAACAATTCATTTAAAGTTTCTGTCTTGGGAACATGATTTTATACTCT 2390
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2335 ATAGATACATAAAAACAATTCATTTAAAGTTTCTGTCTTGGGAACATGATTCTATACTCT 2394
Query 2391 ACTTGGGTTGGTTTAGATTCTTCCtttttttACGGATAGTATTAGAGAATGGCAGAAACA 2450
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2395 ACTTGGGTTGGTTTAGATTCTTCCTTTTTTTACGGATAGTATTAGAGAATGGCAGAAAGA 2454
Query 2451 ACCGTCGGAGAGGATTCCAAAGACTTGCCTACCTGTCTTTGTTGTGGTATTAAGCCAAAC 2510
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2455 GCCGTCGAAGAGGATTCCAAAGACTTGCCTTCCTGTCTTTGTTGTGGTATTAAGCCAAAA 2514
Query 2511 CttggtttttttgttgtgcaaaaattgttgttaggttgttggttttttgtttCGGATGAT 2570
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 2515 CTTGGTTTTTTTGTTGTGCAAAAATTGTTGTTAGGTTGTTCGTTTTT-GTTTCGGATGAT 2573
Query 2571 GTGGCAGAAACATATTTTAAGCTTTGCTCTAATGCCACTCTCAAATTCTTTGTTGTTGTT 2630
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2574 GTGGCAGAAACATCTTTTAAGATTTGCTCTAATGCCACTCTCAAATTCTTTGTTGTTGTT 2633
Query 2631 GTTTCTCTCCTAAGGGTTCATTTATT 2656
||||||||| || |||||||||||||
Sbjct 2634 GTTTCTCTCTTATGGGTTCATTTATT 2659
> Ahg489694 jgi|Araly1|489694|fgenesh2_kg.6__2828__AT4G07960.1
Length=2562
Score = 359 bits (194), Expect = 7e-98
Identities = 775/1046 (74%), Gaps = 78/1046 (7%)
Strand=Plus/Plus
Query 822 ATGGTGATTGTTCAGATTCCTATGTGCAATGA-AAAGGAGGTTTACCAACAATCTATAGG 880
||||| ||||||| || |||||||| ||||| ||| |||||||| || ||||| || |
Sbjct 907 ATGGTTCTTGTTCAAATCCCTATGTGTAATGAGAAA-GAGGTTTATCAGCAATCAATTGC 965
Query 881 AGCTGTGTGTATGCTT-GACTGGCC--AAGGGAAAGAATGCTAG-TTCAGGTTCTTGATG 936
||||| |||| ||| |||||||| ||||| ||| || | | |||| ||||||| |
Sbjct 966 TGCTGTTTGTA-ACTTAGACTGGCCAAAAGGG-AAG-AT-TTTGATTCAAATTCTTGACG 1021
Query 937 ACTCCAG-TGAATTGGAT-GTTCAGCAGCTT-ATAAAAGCGGAAGTACAAAAATGGCAAC 993
| | | | || || ||| ||| || || || |||| || || || ||||||| |
Sbjct 1022 A-TTCGGATG-ATCCGATAACGCAG-AGTTTGATTAAAGAAGAGGTTCATAAATGGC-AG 1077
Query 994 AA--AGGGGTGTTCGGATAGTGTATAGACATCGTCTCATAC-GTA-CTGGTTACAAGGCT 1049
|| | |||| || || |||||| | || ||| | | || | | |||||||| |||
Sbjct 1078 AATCA-AGGTGCACGCATTGTGTATCGTCACCGTGTTA-ACAG-AGAAGGTTACAAAGCT 1134
Query 1050 GGAAACCTTAAAG-CTGCAATGAACTGTGA-ATATGTCAAAGACTACGAGTTTGTCGCCA 1107
|| || ||| ||| |||| ||||||||| | ||||| ||||||||||| || ||||| |
Sbjct 1135 GGTAATCTT-AAGTCTGCTATGAACTGT-AGTTATGTTAAAGACTACGAATTCGTCGCGA 1192
Query 1108 TATTT-GATGCAGATTTCCAGCCACCT-GCGGATTTCTTGAAGAAA-ACTGTGCCTCATT 1164
| ||| || || ||||| || || || | |||||| | || ||| || | |||||||
Sbjct 1193 T-TTTCGACGCTGATTTTCAACC-TCTACCTGATTTCCTCAA-AAAGACAATTCCTCATT 1249
Query 1165 TTAAGGGTAATGAAGAATTAGCCTTGGTCCAAAC-ACGGTGGGCTTTTGTGAACAAAGAC 1223
|||||| |||||| ||| ||| ||||| ||| | | ||||| | |||||||| || ||
Sbjct 1250 TTAAGGATAATGAGGAACTAGGATTGGTTCAAGCGA-GGTGGTCCTTTGTGAATAAGGAA 1308
Query 1224 GAAAACTTGCTT-ACAAGACTCCAGAACATAAATTTGTCTTTCCACTTTGAAGTTGAACA 1282
|| || ||| || ||| || | |||||||| || ||| |||| |||||||| ||||| ||
Sbjct 1309 GAGAATTTG-TTGACACGATTACAGAACATTAACTTGGCTTTTCACTTTGAGGTTGAGCA 1367
Query 1283 GCAGGTCAATGGTGTTTTTATT-AACTTCTTTGGCTTTAATGGAACTGCTGGTGTTTGGA 1341
||| || ||| | | | || || || |||||||| || |||||||| || ||||| ||||
Sbjct 1368 GCAAGTGAATAGCG-TCTTCTTGAATTTCTTTGGATTCAATGGAACAGCCGGTGTCTGGA 1426
Query 1342 GAATCAAAGCCCTCGAGGATTGC-GGGGGATGGTTGGAGCGAACAACTGTTGAGGACATG 1400
| |||||||| | || |||| | || || ||| | ||| |||| || || ||||| |||
Sbjct 1427 GGATCAAAGCTTTGGAAGATT-CTGGTGGTTGGCTCGAGAGAACTACCGTCGAGGATATG 1485
Query 1401 GATATTGCCGTTCGTGCGCATCTTTGTGGATGGAAGTTCATTTAT-CTGAATGATGTTAA 1459
|| ||||| |||||||| || ||| ||||||||| ||||||| | || || | ||| |
Sbjct 1486 GACATTGCTGTTCGTGCTCACCTTCATGGATGGAAATTCATTT-TCCTAAACAACGTTGA 1544
Query 1460 GTGTCTCTGTGAACTT-CCGGAGTCCTATGAGGCATATAAAAAACAGCAATACCGCTGGC 1518
||| | |||||| || ||||| || ||||| || || | |||||||||| | | ||||
Sbjct 1545 GTGCCAATGTGAA-TTACCGGAATCGTATGAAGCTTACAGAAAACAGCAACATAGATGGC 1603
Query 1519 ATTCGGGTCCAATGCAACT-GTTC-CGTTTGTGCTTCTTTGACAT-TC-TTCGGTCAAAG 1574
|||| || || |||||||| ||| | ||||| || | | | || || ||||||
Sbjct 1604 ATTCAGGACCTATGCAACTATTTCGCCTTTGT--TT-GCCGGC-TGTCATTAAATCAAAG 1659
Query 1575 GTGAGTGC-T-GCCAAGAAA-GCAAATATGATATTTCTCTTCTTCTTGCT-ACGGAAGCT 1630
| | || | | |||||| | ||| ||||||| ||||||||| | || | |||||||
Sbjct 1660 AT-A-AGCATAGGAAAGAAATTC-AATCTGATATTCCTCTTCTTCCTCCTGA-GGAAGCT 1715
Query 1631 TATCTTGCCATTCTACTCATTCACGCTCTTCTGCGTCATTCTTCCATTAACGATGTTCT- 1689
||||||||||||||||||||| || ||||| || | || || ||| | || ||||| |
Sbjct 1716 TATCTTGCCATTCTACTCATTTACCCTCTTTTGTATTATCCTGCCAATGACTATGTT-TG 1774
Query 1690 T-CCCAGAGGCTAA-CTTACCATCTTGGGTTGTTTGCTATATCCCTGGGATCA-TGTCCA 1746
| ||| |||||| | ||| || |||||||||||||||| || |||| | || ||||
Sbjct 1775 TACCC-GAGGCTGAGCTTCCCG-CTTGGGTTGTTTGCTACATACCTGCCA-CAATGTCGT 1831
Query 1747 TCTTAAACATCAT-CCCAGCCCC-AAGATCCTTCCC-TTTCATAGTTCCGTATCTCCT-T 1802
|| | |||||| | ||| ||||| ||| || || || ||| ||||| ||||| || || |
Sbjct 1832 TCCTCAACATCCTTCCC-GCCCCGAAG-TCATTTCCGTTT-ATAGTCCCGTACCTTCTCT 1888
Query 1803 TTCGAAAACACCATGTCAGTTACCAA 1828
|| || ||||| ||||| || |||||
Sbjct 1889 TT-GAGAACACAATGTCTGTGACCAA 1913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102462759050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5