BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07340.1
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903629 jgi|Araly1|903629|Al_scaffold_0003_757 2012 0.0
Ahg494918 jgi|Araly1|494918|fgenesh2_kg.8__734__AT5G48560.1 73.1 7e-12
> Ahg903629 jgi|Araly1|903629|Al_scaffold_0003_757
Length=1371
Score = 2012 bits (1089), Expect = 0.0
Identities = 1292/1386 (93%), Gaps = 30/1386 (2%)
Strand=Plus/Plus
Query 183 ATGGAGAACGAGCTGTTTATGAATGCAGGAG--T-TTCGCATCCGCCGGTGATGACGTCA 239
|||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 1 ATGGAGAACGAGCTGTTTATGAATGCTGGAGCTTCTTCGCATCCGCCGGTGATGACGTCA 60
Query 240 CCGTCTTCTTCGTCGGCGATGCTTAAGTGGGTTTCAATGGAGACTCAGCCAGTGGATCCA 299
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 61 CCGTCTTCTTCGCCGGCGATGCTTAACTGGGTTTCAATGGAGACTCAGCCAGTGGACCCA 120
Query 300 AGTCTCAGTCGCAATCTGTTTTGGGAAAAGTCAACGGAACAGAGCATTTTTGATTCGGCT 359
|||||| || ||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 121 AGTCTCGGTTGCAATCTGTTTTGGGAAAAGTCAACGGAACAGAGCATCTTCCATTCGGCT 180
Query 360 CTGAGCTCACTCGTCTCTTCTCCTACGCCGTCAAATTCAAACTTTTCGGTTGGCGGAGTA 419
|| |||||||||||||||||||| |||||||| ||||| |||||||| |
Sbjct 181 CTTAGCTCACTCGTCTCTTCTCCGACGCCGTCCAATTCTAACTTTTC------C------ 228
Query 420 GGTGGAGAAAATGTCATTATGAGAGAGCTCATCGGGAAACTGGGTAATATCGGCGATATC 479
||||||||||||||| |||| |||||||||||||||| | || |||| |||||||| |||
Sbjct 229 GGTGGAGAAAATGTCGTTATCAGAGAGCTCATCGGGAGATTGAGTAACATCGGCGACATC 288
Query 480 TATGGAATTACGGCGAGCAATGGAAA---------CTCGTGTTACGCAACTCCGATGAGC 530
||||||| | |||||||||| ||||| |||||||||||||||||||||||||
Sbjct 289 TATGGAACTCCGGCGAGCAACGGAAACGTCTCTGGCTCGTGTTACGCAACTCCGATGAGC 348
Query 531 TCTCCACCGCCTGGAAGTATGATGGAGACGAAAACGACGACGCCGATGGCAGAACTGTCC 590
|||||| |||||||| ||||||||| ||||||||||||||||||||| ||||| | |||
Sbjct 349 TCTCCAACGCCTGGACGTATGATGGTGACGAAAACGACGACGCCGATAACAGAATTTTCC 408
Query 591 GGCGACCCGGGATTCGCTGAGAGAGCGGCGAGGTTCTCGTGTTTTGGTAGCCGGAGTTTT 650
||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 409 GGCGATCCGGGATTCGCAGAGAGAGCGGCGAGGTTCTCGTGTTTCGGTAGCCGGAGTTTC 468
Query 651 AACAGCAGAACAAACTCGCCGTTTCCGATTAATAACGAACCACCCATCACAACCAATGAG 710
||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct 469 AACGGCAGAACAAACTCGCCGTTTCCGATTAATAACGAACAACCCGTCGCAACCAATGAG 528
Query 711 AAAATGCCACGTGTATCAAGCAGCCCAGTTTTTAAGCCTCTTGCGTCTCATGTTCCCGCC 770
|||||||||||| ||||||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 529 AAAATGCCACGTATATCAAGCAGCCCAGTTCTTAAGCCTCTCGTGTCTCATGTTCCCGCC 588
Query 771 GGCGAATCGTCCGGTGAACT-TTCCCGGAAAAGAAAAACTAAA-TCCAAGCAGAATTCTC 828
|||||||||||||||||| | |||||||||||||| | | ||| ||||||||||||||||
Sbjct 589 GGCGAATCGTCCGGTGAA-TATTCCCGGAAAAGAATAGC-AAATTCCAAGCAGAATTCTC 646
Query 829 CTTCTGCAGTTTCATCATCAAAGGAGATTGAAGAGAAGGAAGATTCTGATCCAAAGAGAT 888
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 CTTCTACAGTTTCACCATCAAAGGAGATTGAAGAGAAGGAAGATTCTGATCCAAAGAGAT 706
Query 889 GCAAAAAATCAGAAGAAAATGGAGACAAAACTAAATCAATTGATCCTTACAAAGATTACA 948
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 707 GCAAAAAATCAGAAGATAATGGAGACAAAACAAAATCAATTGATCCTTACAAAGATTACA 766
Query 949 TTCATGTTAGAGCTCGACGAGGCCAAGCCACCGATAGTCACAGTCTCGCCGAACGAGTTC 1008
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 767 TTCATGTTAGAGCTCGACGAGGCCAAGCCACCGATAGTCATAGTCTCGCCGAACGAGTTC 826
Query 1009 GAAGAGAGAAAATAAGCGAAAGAATGAAGCTGCTTCAAGATCTTGTCCCTGGATGCAACA 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 827 GAAGAGAGAAAATAAGCGAAAGAATGAAGCTGCTTCAAGATCTTGTCCCTGGTTGCAACA 886
Query 1069 AGGTTACTGGAAAAGCACTGATGTTGGATGAAATTATAAACTATGTCCAATCATTGCAAC 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 AGGTTACTGGAAAAGCACTGATGTTGGATGAAATTATAAACTATGTCCAATCATTGCAAC 946
Query 1129 GACAAGTTGAGTTCTTGTCGATGAAGTTATCGTCAGTGAACACCAGGCTGGACTTTAACA 1188
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 947 GACAAGTTGAGTTCTTGTCGATGAAGTTATCGTCGGTGAACACCAGGCTGGACTTTAACA 1006
Query 1189 TGGACGCTCTCTTGTCTAAGGATATATTTCCTTCAAGCAACAATCTAATGCATCATCAAC 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 TGGACGCTCTCTTGTCTAAGGATATATTTCCTTCAAGCAACAATCTAATGCATCATCAAC 1066
Query 1249 AAGTACTTCAATTAGATTCTTCAGCAGAAACGTTATTGGGTGATCATCACAACAAAAATT 1308
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1067 AAGTACTTCAATTAGATTCTTCAGCAGAAACGTTATTGGGTGATCATCACAATAATAATT 1126
Query 1309 TGCAATTGAACCCTGATATTTCTTCTAATAACGTAATAAACCCTTTGGAAACTTCTGAAA 1368
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1127 TGCGGCTGAACCCTGATATTTCTTCTAATAACATAATAAACCCTTTGGAAACTTCTGAAA 1186
Query 1369 CTAGAAGCTTCATTTCTCACTTACCAACACTTGCTCATTTCACTGACTCTATTTCTCAGT 1428
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1187 CTAGAAGCTTCATTTCTCACTTACCAACACTTGCCCATTTCACTGACTCTATTTCTCAGT 1246
Query 1429 ATTCAACATTTTCCGAAGATGATTTA-CATAGCATTATTCATATGGGTTTTGCGCAAAAC 1487
|||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||
Sbjct 1247 ATTCAACATTTTCCGAAGATGATTTAAC-TAGCATTATTCAAATGGGTTTTGCGCAAAAC 1305
Query 1488 CGTCTCCAAGAATTGAACCAAGGTTCATCAAACCAAGTACCATCGCACATGAAAGCTGAA 1547
|| ||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1306 CGGCTCCACGAATTAAACCATGGTTCATCAAACCAAGTACCGTCGCACATGAAAGCTGAA 1365
Query 1548 CTTTGA 1553
||||||
Sbjct 1366 CTTTGA 1371
> Ahg494918 jgi|Araly1|494918|fgenesh2_kg.8__734__AT5G48560.1
Length=1851
Score = 73.1 bits (39), Expect = 7e-12
Identities = 128/169 (76%), Gaps = 14/169 (8%)
Strand=Plus/Plus
Query 506 CTCGTGTTACGCAACTCCGATGAGCTCTCCACCGCCTG-GAAGTAT--GA-TGG--AGAC 559
||| ||||||||||||||||||||||||||||| || || | || || | |||
Sbjct 486 CTCATGTTACGCAACTCCGATGAGCTCTCCACCACCACCGACGAATACGAATTCTCAGAT 545
Query 560 GA--A--AAC-GA-CGACGCCGATGGCAGAACTGTCCGGC-GACCCGGGATTCGCTGAGA 612
|| | ||| || |||||||| || | ||| | || | | || ||||| || || ||||
Sbjct 546 GATGATGAACAGAACGACGCCGTTGACGGAATTCTCAG-CAGATCCGGGTTTTGCGGAGA 604
Query 613 GAGCGGCGAGGTTCTCGTGTTTTGGTAGCCGGAGTTTTAACAGCAGAAC 661
|||| | || ||||| ||||||||||||||||| |||||| | |||||
Sbjct 605 GAGCTTCAAGATTCTCTTGTTTTGGTAGCCGGAGCTTTAACGGAAGAAC 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69171884920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5