BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07350.1
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478057 jgi|Araly1|478057|fgenesh2_kg.3__758__AT3G07350.1 1683 0.0
> Ahg478057 jgi|Araly1|478057|fgenesh2_kg.3__758__AT3G07350.1
Length=1276
Score = 1683 bits (911), Expect = 0.0
Identities = 1184/1309 (90%), Gaps = 46/1309 (4%)
Strand=Plus/Plus
Query 29 ATAACTTA-AGCTTCTCTTCGAATATTCGGAGCCCAACTCCTCTCTCTTCACGCATTTCT 87
||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATAAC-TATAGCTTCTCTGCGAATATTCGGAGCCCAACTCCTCTCTCTTCACGCATTTTT 59
Query 88 CGTTGTCAAAGACAAAGTTCTCTCCTTTTATAAACACCCATCTCCACCTCCT--CTCTCT 145
|||||||||| | ||||||||||||||||||||| |||||||||| |||||| || |||
Sbjct 60 CGTTGTCAAAAAGAAAGTTCTCTCCTTTTATAAAAACCCATCTCCTCCTCCTCGCTATCT 119
Query 146 TATTCAAACTTCTTTGAGAAAATTCGAGCTAAGTGTTTTTATAATATATACATTCTCTGA 205
||||||||||||| ||||||||||| | | | | || | |||||
Sbjct 120 TATTCAAACTTCTCTGAGAAAATTC--G---A--G-----------T-TA-A---TCTGA 156
Query 206 TATGGGTTTCTCTAGAGCAAAACGTGTCACTGATCCACTTGCAGAAGAGGTTAGGGCTCG 265
|||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||
Sbjct 157 TATGGGTTTCTCTAGAGCTAAACGTGTCACTGATCCACTCGCTGACGAGGTTAGGGCTCG 216
Query 266 TCTCGTTGGATGCAGCTTTAGCAGCGGCAGCGAACATACCGGCGACGGAATTGAAGACTA 325
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 217 TCTCGTTGGATGTAGCTTTAGCAGCGGCAGCGAACATACCGGCGACGGAACCGAAGACTA 276
Query 326 CGAAGACGACGACTCGCCTTGTCTCTCTGATCTAGTACAAGGGTTCTTGGAAGATGAAGT 385
||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 277 CGAAGACGACGACTCACCTTGTCTCTCCGATCTCGTACAAGGCTTCTTGGAAGATGAAGT 336
Query 386 TGATACAGTTGATGATGAGTCATGCTGGTGTGATCAAGATTCTGGTTCCGACTCGGATTC 445
||| || |||| |||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 337 TGAGACCGTTGTTGATGAGTCACGCTGGTGTGATCAAGACTCCGGTTCCGACTCGGATTC 396
Query 446 TGACTCGGAACTTG-GCGAGCTCCCTGACTTTGCCGACGATATCGCCAAGCTTCTGAGGA 504
|||||||||||| | | |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 397 TGACTCGGAACTAGTG-GAGCTCCCTGACTTTGCCGACGATATTGCCAAACTTCTGAGGA 455
Query 505 ACTCTCTCAGGGAAGATTCATACGGACGAACGGTGCTGGTACATGTGGCGAGAGCGATGG 564
||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 456 ACTCTCTGAGGGAAGATTCATACGGACGAACGATGCTGGTACACGTGGCGAGAGCGATGG 515
Query 565 AAATGTTGTCGTCTCTCGGATCTCAGCCCGAACAGCGTGCCGTTTTCCAGCGTAAGGTCA 624
|| ||||||||||||| | |||||||| |||||| |||||||||||||||||||||||||
Sbjct 516 AAGTGTTGTCGTCTCTTGAATCTCAGCACGAACAACGTGCCGTTTTCCAGCGTAAGGTCA 575
Query 625 TGTCTCTTCTTAGAGAACTCGGCCACAATGCGGCCATCTGCAAAACTAAATGGAAATCCT 684
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TGTCTCTTCTAAGAGAACTCGGCCACAATGCGGCCATCTGCAAAACTAAATGGAAATCCT 635
Query 685 CCGGCGGACTCACCGCCGGTAACCATGAGTTCATCGACGTCGTGTATACACCTTCCGCCT 744
||||||||||||||||||| ||||| || |||||||||||| || |||||||||||||||
Sbjct 636 CCGGCGGACTCACCGCCGGAAACCACGAATTCATCGACGTCATGCATACACCTTCCGCCT 695
Query 745 CGTCTCAGTCCGTCCGTTTCATCGTCGATTTAGATTTCTCGTCGCGGTTTCAAATCGCGA 804
|||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 696 CGTCTCAGCCCGTCCGTTACATCGTCGATTTAGATTTCGCGTCGCGGTTTCAAATCGCGA 755
Query 805 GGCCAACTTCACAGTACGCGCGTGTGCTTCAATCGCTTCCGGCGGTTTTCGTCGGAA-AG 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 756 GGCCAACTTCACAGTACGCGCGTGTGCTTCAATCGCTTCCGGCGGTTTTCGTCGGAAGAG 815
Query 864 GGGGATGATCTGAAGCGGATCTTGCGTCTCGTGTGTGACGCCGCGAGGATTTCTCTTAGG 923
||| | |||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 816 GGG-ACGATCTGAAGCGGATCTTGCGGCTCGTATGTGACGCGGCGAGGATTTCTCTTAGA 874
Query 924 AACCGCGGGCTGACGCTTCCGCCGTGGAGGAAGAATCGTTATATGCAGACGCGGTGGCTT 983
|||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 875 AACCGCGGCCTCACGCTACCGCCGTGGAGGAAGAATCGTTATATGCAAACGCGGTGGCTT 934
Query 984 GGTCCTTACAAACGCACCACCAACTTAACGCCGTCAACTTCCGGTGT-AGACACCGTCAT 1042
||||||||||||||||| |||||||||||||||||| || ||| || | ||||||||||
Sbjct 935 GGTCCTTACAAACGCACTACCAACTTAACGCCGTCATCTACCGCCGTTA-ACACCGTCAT 993
Query 1043 GTGTCGTGCCATCGGTTTCGATAATGCCGTCGGAGGCCGTCTATTTGTGCGAACACGATA 1102
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 994 GTGTCGTGCCATCGGTTTCGATAATGTTGTCGGTGGCCGTCTATTTGTGCGAACCCGATA 1053
Query 1103 AAAACTAGACCAAAAAGACCACGTGTCATTTTTAACTTG-ATTTTTTCCATATACGTTCT 1161
|| | ||||||||||| ||||||||||||||||||||| |||||||| | |||| | ||
Sbjct 1054 AAGCC-AGACCAAAAAGGCCACGTGTCATTTTTAACTTGGATTTTTTCAAAATACATCCT 1112
Query 1162 AGAGAATAATA--AT--T-CATTATTTACAT-TTCTCATTTGaaattattaaaataaaaa 1215
||||||||||| || | ||||||||| | ||||| ||||||||||| | ||||||
Sbjct 1113 AGAGAATAATAGTATAATTCATTATTTAGAAATTCTCGTTTGAAATTAT-A---TAAAAA 1168
Query 1216 aatctgataacaaaaacaaacaaattaaagccaagaaaaatCCAGATTTTACGATGAAGA 1275
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 AATGTGATT-CAAAAACAAACAAATTAAAGCCAAGAAAAATCCAGATTTTACGATGAAGA 1227
Query 1276 AAGAATTCTACGCGGAAAATGAACATCGTCAAGAAAACACACAAGGTTC 1324
|| ||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct 1228 AACAATTCTATGCGGAAAATGAACATCGTCCAGGAAACACACAAGGTTC 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49521669183
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5