BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07360.1
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497366 jgi|Araly1|497366|fgenesh2_kg.267__3__AT3G07360.1 2651 0.0
Ahg928411 jgi|Araly1|928411|scaffold_300868.1 1083 0.0
> Ahg497366 jgi|Araly1|497366|fgenesh2_kg.267__3__AT3G07360.1
Length=1765
Score = 2651 bits (1435), Expect = 0.0
Identities = 1630/1721 (95%), Gaps = 25/1721 (1%)
Strand=Plus/Plus
Query 1 CTTCTTCTCTCTTCCTC-----ATATTTATTACTCTCTCTTTCACAAACACACAGaaa-a 54
||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |
Sbjct 1 CTTCTTCTCTCTTCCTCATATAATATTTATTACTCTCTCTTTCAC-AA-ACACAGAAACA 58
Query 55 taaataaat--aaaat-taattaatgtgagaaaatcaattcaaaaattTGGACATACGTA 111
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 59 -AAATAAATAAAAAATATAATTAATGTGAGAAAATCAATTCAAAAATTTCGACATACGTA 117
Query 112 TCATCTGAGAGAAGAAGGGTTTGGTGAATACCGGCGGGTGGAACCGACGGCGATGGCGAA 171
||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 118 --ATCTGAGAG--GAAGGGTTGGGTGAATACCGGC-GGTGGATCCGACGGCGATGGCGAA 172
Query 172 GACCGGTGTTTTCGATTCGGATCCGACGGCGATTGCTAAAGCCAAGGAACTGAAGCGTGA 231
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 173 GACCGGTGTTTTCGATTCGGATCCGACGGCGATTGCGAAAGCCAAAGAACTGAAGCGTGA 232
Query 232 GATGAAGAAGTTGCTGATTAAGATCGATGACGAAGATGA-TTTGGGTGTTCAGACGATTG 290
|||||||||| |||||||||||||||| || |||||||| |||||| |||||||| ||||
Sbjct 233 GATGAAGAAGCTGCTGATTAAGATCGAAGATGAAGATGACTTTGGG-GTTCAGACAATTG 291
Query 291 ATCAGTTACAGGACGCTTTGTCTGCGTTGAGAGAAGCGACGATGAGGAAGATGGCGAAAT 350
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 ATCAGTTACAAGAGGCTTTGTCTGCGTTGAGAGAAGCGACGATGAGGAAGATGGCGAAAT 351
Query 351 CTTCCTCGTTAGAGATGCTCGAGACTGTGTCTTGTCCTGAGGAGTTTCGTTGTCCTCTCT 410
| || || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CGTCTTCACTGGAGATGCTCGAGACTGTGTCTTGTCCTGAGGAGTTTCGTTGTCCTCTCT 411
Query 411 CTAATGAGCTTATGAGGGATCCCGTCGTTTTGGCTTCTGGTCAGACATACGACAAGTTAT 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 CTAATGAGCTTATGAGGGATCCCGTCGTTTTGGCTTCTGGTCAGACATACGACAAGTTAT 471
Query 471 TTATCCAGAAATGGTTGAGCTCAGGGAACAGAACATGTCCCAAGACTCAGCAAGTTCTGC 530
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 472 TTATCCAGAAATGGTTGAGCTCAGGCAACAGAACATGTCCCAAGACTCAGCAAGTTCTGC 531
Query 531 CTCACACGGCTTTAACACCTAATCTCTTAATCCGTGAAATGATCTCGAA-ATGGTGCAAG 589
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 532 CTCACACGGCTTTAACACCTAATCTCTTAATCCGTGAAATGATCTC-AAGATGGTGCAAG 590
Query 590 AAGAACGGGCTTGAGACGAAGAGCCAATATCATCCCAACCTTGTAAATGAAGATGAAACT 649
|||| |||||| |||||||||| |||||||||||||||||||||||||||||| ||| ||
Sbjct 591 AAGATCGGGCTAGAGACGAAGAACCAATATCATCCCAACCTTGTAAATGAAGAGGAAGCT 650
Query 650 GTGACAAGATCAGATCGTGAGATTTTCAATTCCTTGCTCTGTAAAGTCTCTTCTTCGAAC 709
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GTCACAAGATCAGATCGTGAGATTTTCAATTCCTTGCTCTGTAAAGTCTCTTCTTCGAAC 710
Query 710 CTTCAAGATCAAAAATCAGCTGCCAAGGAGCTAAGACTTCTGACCAGGAAAGGCACTGAG 769
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 711 CTTCAAGATCAAAATTCAGCTGCCAAGGAGCTAAGACTTCTGACCAAGAAAGGCACTGAG 770
Query 770 TTCCGAGCTCTTTTTGGCGAATCTCCGGATGAGATCACCAGGTTGGTGAATCCCTTGTTA 829
||||||||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 771 TTCCGAGCTCTTTTTGGTGAATCTCCGGATGAAATCACCCGGTTGGTTAATCCCTTGTTA 830
Query 830 CACGGGTCAAACCCAGATGAGAAGCTTCAAGAAGATGTGGTTACAACATTGTTGAACATA 889
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 831 CACGGGTCAAACCCAGATGAGAAGCTTCAAGAAGATGTGGTCACAACATTGTTGAACATA 890
Query 890 TCAATACATGATGACAGCAACAAGAAGCTCGTCTGCGAAAATCCTAATGTGATTCCTCTC 949
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 891 TCCATACATGATGACAGCAACAAGAAGCTCGTCTGCGAAAATCCTTGTGTGATTCCTCTC 950
Query 950 CTTATCGATGCATTGAGGCGTGGAACAGTCGCCACGAGAAGCAATGCAGCTGCAGCGATC 1009
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 951 CTTATCGATGCATTGAGGCGTGGAACGGTAGCCACGAGAAGCAATGCAGCTGCGGCGATC 1010
Query 1010 TTCACTCTGTCAGCTCTCGATTCAAACAAAGTACTTATAGGGAAGTCCGGAATCCTGAAA 1069
|| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1011 TTTACTCTGTCGGCACTCGATTCGAACAAAGTACTTATAGGGAAGTCCGGAATCCTGAAA 1070
Query 1070 CCGCTTATCGATCTCCTAGAAGAAGGGAATCCATTAGCTATCAAAGACGTAGCTGCAGCG 1129
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1071 CCGCTTATTGATCTCCTAGAAGAAGGGAATCCGTTAGCTATCAAAGACGTAGCTGCAGCG 1130
Query 1130 ATCTTCACTCTTTGTATAGCCCATGAGAACAGGAGTAGAGCTGTGAGAGACGGAGCTGTT 1189
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1131 ATCTTCACTCTTTGTATAGCTCATGAAAACAGGAGTAGAGCTGTGAGAGACGGAGCTGTT 1190
Query 1190 AGGGTTTTAGGTAAGAAAATCTCGAATGGGTTGTACGTTGATGAGCTTTTAGCTATATTG 1249
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1191 AGGGTTTTAGGTAAGAAAATCTCAAATGGGTTGTACGTCGATGAGCTTTTAGCTATATTA 1250
Query 1250 GCAATGCTTGTTACTCACTGGAAGGCTGTGGAGGAATTGGGTGAGCTCGGTGGGGTTTCA 1309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GCAATGCTTGTTACTCACTGGAAGGCTGTGGAGGAATTGGGTGAGCTCGGTGGGGTTTCT 1310
Query 1310 TGGTTGCTGAAGATAACTCGAGAGAGCGAGTGCAAGCGAAACAAAGAGAATGCGATAGTG 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 TGGTTGCTGAAGATAACTCGAGAGAGCGAGTGCAAGCGAAACAAAGAGAATGCGATAGTG 1370
Query 1370 ATACTGCATACTATATGTTTCAGCGACAGGACAAAGTGGAAGGAGATCAAAGAAGAGGAG 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 ATACTGCATACTATATGTTTCAGCGACAGGACAAAGTGGAAGGAGATCAAAGAAGAGGAG 1430
Query 1430 AATGCTCATGGAACGATAACAAAGCTTTCGCGTGAAGGAACTTCAAGGGCGCAGAGGAAA 1489
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1431 AATGCTCATGGAACGATAACAAAGCTTTCGCGTGAAGGAACTTCAAGGGCACAGAGGAAA 1490
Query 1490 GCAAACGGGATATTGGACAGACTGAGAAAAGCTATGAATCTCACTCATACAGCCTGAGAA 1549
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 GCAAATGGGATCTTGGACAGACTGAGAAAAGCTATGAATCTCACTCATACAGCCTGAGAG 1550
Query 1550 AAGCCTTGAAATCTGCAATGTAAATTACCTAAAATCTTGTTTCttttttttACTTTATTT 1609
|||||||| | || ||||||||||||| |||||||| |||| || || |||||||||
Sbjct 1551 AAGCCTTGGATTCGGCAATGTAAATTATCTAAAATCCTGTT-CTAACTT--ACTTTATTT 1607
Query 1610 GGCTGTAAGAATTTTTGTAAATTATTCATATCTTTAGGATCTGAATGGTTAT-TGGTTTT 1668
|||| |||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 1608 GGCTTTAAGAATTTTTGTAAATTATTCATATCTTTAGGATCTGAATGATTTTATGGTTTT 1667
Query 1669 CGTATGTGAGATGTAAGTAGAAATCTGTGTGAATAGTTTTT 1709
||||| ||||||||||||||||||||||||| |||| ||||
Sbjct 1668 CGTATATGAGATGTAAGTAGAAATCTGTGTGGATAGGTTTT 1708
> Ahg928411 jgi|Araly1|928411|scaffold_300868.1
Length=973
Score = 1083 bits (586), Expect = 0.0
Identities = 639/665 (96%), Gaps = 1/665 (0%)
Strand=Plus/Plus
Query 904 CAGCAACAAGAAGCTCGTCTGCGAAAATCCTAATGTGATTCCTCTCCTTATCGATGCATT 963
||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||
Sbjct 310 CAGCAACAAGAAGCTCGTCTGCG-AAATCCTTGTGTGATTCCTCTACTTATCGATGCATT 368
Query 964 GAGGCGTGGAACAGTCGCCACGAGAAGCAATGCAGCTGCAGCGATCTTCACTCTGTCAGC 1023
|||||||||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 369 GAGGCGTGGAACGGTAGCCACGAGAAGCAATGCAGCTGCGGCGATCTTTACTCTGTCGGC 428
Query 1024 TCTCGATTCAAACAAAGTACTTATAGGGAAGTCCGGAATCCTGAAACCGCTTATCGATCT 1083
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 429 ACTCGATTCGAACAAAGTACTTATAGGGAAGTCCGGAATCCTGAAACCGCTTATTGATCT 488
Query 1084 CCTAGAAGAAGGGAATCCATTAGCTATCAAAGACGTAGCTGCAGCGATCTTCACTCTTTG 1143
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 489 CCTAGAAGAAGGGAATCCGTTAGCTATCAAAGACGTAGCTGCAGCGATCTTCACTCTTTG 548
Query 1144 TATAGCCCATGAGAACAGGAGTAGAGCTGTGAGAGACGGAGCTGTTAGGGTTTTAGGTAA 1203
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 TATAGCTCATGAAAACAGGAGTAGAGCTGTGAGAGACGGAGCTGTTAGGGTTTTAGGTAA 608
Query 1204 GAAAATCTCGAATGGGTTGTACGTTGATGAGCTTTTAGCTATATTGGCAATGCTTGTTAC 1263
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 609 GAAAATCTCAAATGGGTTGTACGTCGATGAGCTTTTAGCTATATTAGCAATGCTTGTTAC 668
Query 1264 TCACTGGAAGGCTGTGGAGGAATTGGGTGAGCTCGGTGGGGTTTCATGGTTGCTGAAGAT 1323
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 669 TCACTGGAAGGCTGTGGAGGAATTGGGTGAGCTCGGTGGGGTTTCTTGGTTGCTGAAGAT 728
Query 1324 AACTCGAGAGAGCGAGTGCAAGCGAAACAAAGAGAATGCGATAGTGATACTGCATACTAT 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 AACTCGAGAGAGCGAGTGCAAGCGAAACAAAGAGAATGCGATAGTGATACTGCATACTAT 788
Query 1384 ATGTTTCAGCGACAGGACAAAGTGGAAGGAGATCAAAGAAGAGGAGAATGCTCATGGAAC 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 ATGTTTCAGCGACAGGACAAAGTGGAAGGAGATCAAAGAAGAGGAGAATGCTCATGGAAC 848
Query 1444 GATAACAAAGCTTTCGCGTGAAGGAACTTCAAGGGCGCAGAGGAAAGCAAACGGGATATT 1503
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 849 GATAACAAAGCTTTCGCGTGAAGGAACTTCAAGGGCACAGAGGAAAGCAAATGGGATCTT 908
Query 1504 GGACAGACTGAGAAAAGCTATGAATCTCACTCATACAGCCTGAGAAAAGCCTTGAAATCT 1563
||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 909 GGACAGACTGAGAAAAGCTATGAATCTCACTCATACAGCCTGAGAGAAGCCTTGGATTCC 968
Query 1564 GCAAT 1568
|||||
Sbjct 969 GCAAT 973
Score = 472 bits (255), Expect = 5e-132
Identities = 295/314 (94%), Gaps = 3/314 (1%)
Strand=Plus/Plus
Query 142 CCGGCGGGTGGAACCGACGGCGATGGCGAAGACCGGTGTTTTCGATTCGGATCCGACGGC 201
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCGGC-GGTGGATCCGACGGCGATGGCGAAGACCGGTGTTTTCGATTCGGATCCGACGGC 59
Query 202 GATTGCTAAAGCCAAGGAACTGAAGCGTGAGATGAAGAAGTTGCTGATTAAGATCGATGA 261
|||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 60 GATTGCGAAAGCCAAAGAACTGAAGCGTGAGATGAAGAAGCTGCTGATTAAGATCGAAGA 119
Query 262 CGAAGATGA-TTTGGGTGTTCAGACGATTGATCAGTTACAGGACGCTTTGTCTGCGTTGA 320
|||||||| |||||| |||||||| |||||||||||||| || ||||||||||||||||
Sbjct 120 TGAAGATGACTTTGGG-GTTCAGACAATTGATCAGTTACAAGAGGCTTTGTCTGCGTTGA 178
Query 321 GAGAAGCGACGATGAGGAAGATGGCGAAATCTTCCTCGTTAGAGATGCTCGAGACTGTGT 380
||||||||||||||||||||||||||||||| || || | |||||||||||||||||||
Sbjct 179 GAGAAGCGACGATGAGGAAGATGGCGAAATCGTCTTCACTGGAGATGCTCGAGACTGTGT 238
Query 381 CTTGTCCTGAGGAGTTTCGTTGTCCTCTCTCTAATGAGCTTATGAGGGATCCCGTCGTTT 440
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 239 CTTGTCCTGAGGAGTTTCGTTGTCCTCTCTCTAATGAGCTTATGAGGGATCCTGTTGTTT 298
Query 441 TGGCTTCTGGTCAG 454
||||||||||||||
Sbjct 299 TGGCTTCTGGTCAG 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67076921445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5