BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07370.1
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478058 jgi|Araly1|478058|fgenesh2_kg.3__759__AT3G07370.1 1493 0.0
> Ahg478058 jgi|Araly1|478058|fgenesh2_kg.3__759__AT3G07370.1
Length=1115
Score = 1493 bits (808), Expect = 0.0
Identities = 892/933 (96%), Gaps = 3/933 (0%)
Strand=Plus/Plus
Query 245 AGA-TATGGTTACAGGCGTGGCTTCCGCCATGGCGGAGCGGTTAAAGGAAGACGGAAACA 303
||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 90 AGACTATGGTTACAGGCGTGGCCTCCCCCATGGCGGAGCGGTTAAAGGAAGACGGAAACA 149
Query 304 ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGGCAATAGCTT 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 150 ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGGCAATAGCCT 209
Query 364 TGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTTTGCCACATGAAGCGAAAGG 423
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 210 TGTCTCCAAATGTTCCTGCTTATTGGACAAATCGAGCACTTTGCCACATGAAACGAAAGG 269
Query 424 ATTGGACTAAGGTTGAAGAGGATTGTCGCAAAGCTATTCAGCTTGTCCACAATTCCGTCA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 ATTGGACTAAGGTTGAAGAGGATTGTCGCAAAGCTATTCAGCTTGTCCACAATTCCGTCA 329
Query 484 AGGCACACTACATGCTAGGACTTGCATTATTGCAGAAGAAAGAATTTACTAATGGAGTCA 543
|||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 330 AGGCCCACTACATGCTAGGACTTGCATTATTGCAGAAGAAAGAATATACTGATGGAGTCA 389
Query 544 AAGAATTGCAAAGGGCTTTAGATCTTGGAAGATGCTCGAATCCAACAGGATATATGGTAG 603
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 390 AAGAGTTGCAAAGGGCTTTAGATCTTGGAAGAAGCTCGAATCCAACAGGATATATGGTTG 449
Query 604 AAGAAATATGGGAAGAGCTTTCTAAAGCAAAATACATGGAGTGGGAACTGGTTTCTGCAA 663
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 AGGAAATATGGGAAGAGCTTTCTAAAGCAAAATACATGGAGTGGGAACTGGTTTCTGCAA 509
Query 664 TGCGGTCATGGGAACTGAATAGTTTGAAGGAAACTTGTGAGGCTGCTCTTAATCAACAAC 723
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 510 GGCGCTCATGGGAACTGAGTAGTTTGAAGGAAACTTGTGAGGCTGCTCTTAATCAACAAT 569
Query 724 GTGCTTTAGATATGTCTCGAACAGAAGAGTCCTCAGACGAAGCATATACTGCCCATACTG 783
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
Sbjct 570 GTGCTTTAGATATGTCTCGAACAGAAGAGTCCTCAGACGAAGCCTATATTGCCCATACCG 629
Query 784 AGCGTTTGAAAGCTCTTGAACGAGTGTTTAAGAAAGCTGCAGAAGAAGATAAACCAACTG 843
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 630 AGCGTTTAAAAGCTCTTGAACGAGTGTTTGAGAAAGCTGCAGAAGAAGATAAACCAACTG 689
Query 844 AGGTGCCAGATTATTTATGTTGCAATATAACTCTTGAGATTTTCCGAGATCCTGTAATTT 903
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 690 AGGTGCCAGGTTATTTGTGTTGCAATATAACTCTTGAGATTTTCCGAGATCCTGTAATAT 749
Query 904 CTCCAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAACATCTCAAGAAGGTGGGGA 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 CTCCAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAACATCTCAAGAAGGTGGGGA 809
Query 964 AGTTTGATCCTATAACTCGTGAAAAAATCGACCCGGCTAATCTCGTTCCAAATCTGGCTA 1023
|||||||||| ||||| |||||||||||||||||| | || ||||| |||||||||||||
Sbjct 810 AGTTTGATCCGATAACGCGTGAAAAAATCGACCCGTCCAAGCTCGTCCCAAATCTGGCTA 869
Query 1024 TCAAAGAGGCAGTGGCAGCATATCTAGAAAAACACGTCTGGGCTTACAAGATGGGTTGTT 1083
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 870 TCAAAGAGGCAGTGGCTGCATATCTAGAAAAACACGTTTGGGCTTACAAGATGGGTTGTT 929
Query 1084 GAT-CGAAATGGGGATTAACATAAACACAATGAAGCGGATGAGAAATTGAGGTTAACTAC 1142
||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 930 GATGC-AAATGGGGATTAACATAAACACAATGAAGCGGATGTGAAATTGAGGTTAACTAG 988
Query 1143 TCAGGTGACCGAACAAAACAGATGGGTGCGTTT 1175
| | |||| |||||||||||||||||||||||
Sbjct 989 TAATGTGAGTGAACAAAACAGATGGGTGCGTTT 1021
Score = 156 bits (84), Expect = 5e-37
Identities = 96/101 (95%), Gaps = 3/101 (3%)
Strand=Plus/Plus
Query 1198 GTTGTTGCCGATGTTTTCAGTGTAAGATTCTCTGCCCTGTGTATATATTACAATGttttt 1257
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1018 GTT-TTGCCGATGTTTTCAGTGTAAGATTCTCTACCCTGTGTATATAT-ACAATGTTTTT 1075
Query 1258 ttGTGCACTCTGTACACATTGGCCATATGGCTTAGCCTATA 1298
| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1076 T-GTGCACTCTGCACACATTGGCCATATGGCTTAGCCTATA 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49559792100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5