BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07390.1
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478059 jgi|Araly1|478059|fgenesh2_kg.3__760__AT3G07390.1 950 0.0
> Ahg478059 jgi|Araly1|478059|fgenesh2_kg.3__760__AT3G07390.1
Length=963
Score = 950 bits (514), Expect = 0.0
Identities = 858/1014 (85%), Gaps = 64/1014 (6%)
Strand=Plus/Plus
Query 136 TCTATATAAACATCACATGTCCCTGTGTCTTAAAATACCTCTTATCAAACACCAAACCAC 195
|||||||||||||| ||||||| |||||||||| || | |||||||||||||| | |||
Sbjct 1 TCTATATAAACATCTCATGTCCATGTGTCTTAATAT-CTTCTTATCAAACACC--A-CAC 56
Query 196 ACCAGAACAGAACTCAGCCATGGcttcttcttcttcttctcttctAATCCTAGCCGTTGC 255
| | | ||| | | ||||| |||||||||||||||||||||||||||||||
Sbjct 57 A--ACACCAG-A---A--CATGG------CTTCTTCTTCTCTTCTAATCCTAGCCGTTGC 102
Query 256 TTGTTTCGTCTCGCTAATCTCACCGGCGATTTCACAACAGGCTTGCAA-ATCACAGAACT 314
|||||||||||||||||||||||||||||||||||| ||| ||||| | | ||||||
Sbjct 103 TTGTTTCGTCTCGCTAATCTCACCGGCGATTTCACAGCAGACTTGCTCTA-CGCAGAACC 161
Query 315 TGAACTCCGCCGGTCCGTTCGATAGTTGCGAAGACCTTCCGGTACTCAATTCCTACCTCC 374
| |||||||| ||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 162 TAAACTCCGCTGGTCCGTACGATAGTTGCCTGGACCTTCCCGTACTCAATTCCTACCTCC 221
Query 375 ATTACACCTACAATTCCTCAAATTCATCTCTCTCCGTCGCTTTCGTCGCCACTCCATCTC 434
||||||| ||| |||||||||| || |||||||| || ||||||||||||||||||||||
Sbjct 222 ATTACACATACGATTCCTCAAACTCGTCTCTCTCGGTTGCTTTCGTCGCCACTCCATCTC 281
Query 435 AAGCCAACGGTGGCTGGGTCGCTTGGGCTATTAACCCTACGGGGACTAAGATGGCTGGTT 494
|| ||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 282 AAACCAACAATGGCTGGGTCGCTTGGGCTATCAATCCTACGGGGACTAAGATGGCCGGTT 341
Query 495 CTCAAGCCTTCCTCGCTTACAGATCCGGCGGTGGTGCGGCTCCGGTCGTGAAGACGTACA 554
|||| |||||||||||||||||||| ||| ||||| ||||| ||||| | ||||||||
Sbjct 342 CTCAGGCCTTCCTCGCTTACAGATCTAACGGCGGTGCTGCTCCCGTCGTCAGGACGTACA 401
Query 555 ACATTAGCAGCTACAGCAGTCTCGTCGAA-G-G-TA--A-ACTTGCTTTTGATTTTTGGA 608
|||| ||| ||||||| ||||| |||| | | || | |||| | || || || ||||
Sbjct 402 ACATAAGCGGCTACAG---TCTCGACGAAAGCGCTACGAGACTTTCCTTCGAGTTCTGGA 458
Query 609 ATCTACGCGCCGAGTCGTTAAGCGGCGGTAGGATCGCCATTTTCACGACGGTTAAGGTTC 668
||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| |
Sbjct 459 ATCTACGCGCCGAGTCGTTGAGCGGCGGCAGGATCGCGATTTTCACCACGGTTAAGGTCC 518
Query 669 CGGCGGGAGCTGATAGTGTGAATCAGGTATGGCAGATCGGCGGCAATGTTACCAACGGTC 728
|||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 519 CGGCGGGAGCCGATAGTGTGAATCAGGTGTGGCAGATCGGCGGGAATGTCACCAACGGTC 578
Query 729 GTCCCGGTGTACATCCTTTCGGTCCT-GATAATTTGGGCTCCCACCGTGTGTTGAG-TTT 786
||||||| ||||||||||| ||| | |||||||||||||||||| || |||| |||
Sbjct 579 GTCCCGGAATACATCCTTTCACTCCAAG-TAATTTGGGCTCCCACCGCGTCCTGAGATTT 637
Query 787 CACAGAAGATGCAGCACCGGGCTCTGCTCCTTCGCCGGGATCTGCTCCGGCGCCGGGCAC 846
|| | || | |||||||||||||| || || | | || | | | | ||
Sbjct 638 -ACCGCCGA--C-GCACCGGGCTCTGC-CC--CG-----A-C-GC-C-GAC-C-----AC 675
Query 847 CAGTGGCTCGACTACCCCAGGAACA-GCGGCGGGAGGTCCAGGGAACGCGGGGTCATTGA 905
| ||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 676 CGGTGGCTCCACTACCCCAGGG-CAAGCGGCGGGAGGTCCAGGGAACGCGGGGTCTTTGA 734
Query 906 CGAGGAACGTAAattttggggtcaatttgggaattttggttttgttgggttctattttta 965
||| ||||||||||||||||||||||| | ||||||||||||||||| | |||||||||
Sbjct 735 CGACCAACGTAAATTTTGGGGTCAATTTTGTAATTTTGGTTTTGTTGGCTACTATTTTTA 794
Query 966 ttttCTGAATGGGGAtctctctct---agtctctcttctcttcttgagtctctctctAtt 1022
||||||||||| |||||||||| | ||||||||| |||||||||||||||||| |
Sbjct 795 TTTTCTGAATGTA-ATCTCTCTCTCTCA-TCTCTCTTCACTTCTTGAGTCTCTCTCTCTA 852
Query 1023 tttttttttttttGGTTTGTTCGAACAATAATGGTGCCCCATACTTTTGTACTGTTTTAG 1082
||| |||||||||| || | | || |||||||| ||||||||||||| |||||||||||
Sbjct 853 TTTCTTTTTTTTTG-TTCGAAC-AATAATAATGGAGCCCCATACTTTT-TACTGTTTTAG 909
Query 1083 TCTTAGGGCCATTTACTTTGTTTCACCACATTACTTAGAGTTATTGGATTGTAT 1136
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 910 TCTTAGGGCCATTTACTTCGTTTCACCACATTATTTAGAGTTATTGGATTGTAT 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44641935807
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5